RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 DDX17Q92841 729 aaKnown RBP25.72■■□□□ 1.71
COL9A3-212ENST00000481800 SIRT1Q96EB6 747 aa25.72■■□□□ 1.71
COL9A3-212ENST00000481800 ORAI2Q96SN7 254 aa25.72■■□□□ 1.71
COL9A3-212ENST00000481800 RGS17Q9UGC6 210 aaPredicted RBP25.72■■□□□ 1.71
COL9A3-212ENST00000481800 PLEKHH1Q9ULM0 1364 aa25.69■■□□□ 1.7
COL9A3-212ENST00000481800 ESCO1Q5FWF5 840 aa25.68■■□□□ 1.7
COL9A3-212ENST00000481800 NUTM2BA6NNL0 878 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-212ENST00000481800 NUTM2EB1AL46 878 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-212ENST00000481800 NUTM2AQ8IVF1 878 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-212ENST00000481800 LAMC1P11047 1609 aa25.66■■□□□ 1.7
COL9A3-212ENST00000481800 CDC42BPGQ6DT37 1551 aa25.65■■□□□ 1.7
COL9A3-212ENST00000481800 NUTM2FA1L443 756 aa25.65■■□□□ 1.7
COL9A3-212ENST00000481800 POGKQ9P215 609 aa25.65■■□□□ 1.7
COL9A3-212ENST00000481800 PRAM1Q96QH2 718 aa25.64■■□□□ 1.7
COL9A3-212ENST00000481800 NHSL1Q5SYE7 1610 aa25.63■■□□□ 1.69
COL9A3-212ENST00000481800 SAFB2Q14151 953 aaKnown RBP eCLIP25.63■■□□□ 1.69
COL9A3-212ENST00000481800 KNDC1Q76NI1 1749 aa25.63■■□□□ 1.69
COL9A3-212ENST00000481800 POTEAQ6S8J7 498 aa25.62■■□□□ 1.69
COL9A3-212ENST00000481800 SHPRHQ149N8 1683 aa25.61■■□□□ 1.69
COL9A3-212ENST00000481800 TRAK1Q9UPV9 953 aa25.61■■□□□ 1.69
COL9A3-212ENST00000481800 LRP6O75581 1613 aa25.61■■□□□ 1.69
COL9A3-212ENST00000481800 SOS2Q07890 1332 aaPredicted RBP25.61■■□□□ 1.69
COL9A3-212ENST00000481800 NPHP3Q7Z494 1330 aa25.61■■□□□ 1.69
COL9A3-212ENST00000481800 PNPLA6Q8IY17 1366 aa25.59■■□□□ 1.69
COL9A3-212ENST00000481800 FOXO3O43524 673 aa25.58■■□□□ 1.69
COL9A3-212ENST00000481800 ZNF772Q68DY9 489 aaPredicted RBP25.57■■□□□ 1.68
COL9A3-212ENST00000481800 DLC1Q96QB1 1528 aa25.55■■□□□ 1.68
COL9A3-212ENST00000481800 ADGRB1O14514 1584 aa25.55■■□□□ 1.68
COL9A3-212ENST00000481800 XPCQ01831 940 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-212ENST00000481800 C8orf37Q96NL8 207 aa25.5■■□□□ 1.67
COL9A3-212ENST00000481800 MINK1Q8N4C8 1332 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-212ENST00000481800 ADAMTS2O95450 1211 aa25.49■■□□□ 1.67
COL9A3-212ENST00000481800 HIRIP3Q9BW71 556 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-212ENST00000481800 PHF8Q9UPP1 1060 aa25.49■■□□□ 1.67
COL9A3-212ENST00000481800 AFF2P51816 1311 aa25.48■■□□□ 1.67
COL9A3-212ENST00000481800 FMN2Q9NZ56 1722 aa25.47■■□□□ 1.67
COL9A3-212ENST00000481800 PXDNQ92626 1479 aa25.47■■□□□ 1.67
COL9A3-212ENST00000481800 NEUROD1Q13562 356 aa25.45■■□□□ 1.66
COL9A3-212ENST00000481800 KRT28Q7Z3Y7 464 aa25.45■■□□□ 1.66
COL9A3-212ENST00000481800 NGLY1Q96IV0 654 aa25.45■■□□□ 1.66
COL9A3-212ENST00000481800 SIN3AQ96ST3 1273 aa25.45■■□□□ 1.66
COL9A3-212ENST00000481800 PSME1Q06323 249 aa25.44■■□□□ 1.66
COL9A3-212ENST00000481800 EIF3AQ14152 1382 aaKnown RBP25.44■■□□□ 1.66
COL9A3-212ENST00000481800 ANKARQ7Z5J8 1434 aa25.43■■□□□ 1.66
COL9A3-212ENST00000481800 WASLO00401 505 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-212ENST00000481800 RXRBP28702 533 aa25.42■■□□□ 1.66
COL9A3-212ENST00000481800 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-212ENST00000481800 L3MBTL2Q969R5 705 aa25.42■■□□□ 1.66
COL9A3-212ENST00000481800 PMFBP1Q8TBY8 1022 aa25.41■■□□□ 1.66
COL9A3-212ENST00000481800 KIF1AQ12756 1690 aa25.41■■□□□ 1.66
COL9A3-212ENST00000481800 SPATA31A3Q5VYP0 1347 aa25.4■■□□□ 1.66
COL9A3-212ENST00000481800 NBPF1Q3BBV0 1214 aa25.4■■□□□ 1.66
COL9A3-212ENST00000481800 ADGRB2O60241 1585 aa25.39■■□□□ 1.65
COL9A3-212ENST00000481800 QTRT2Q9H974 415 aaKnown RBP25.38■■□□□ 1.65
COL9A3-212ENST00000481800 LMOD2Q6P5Q4 547 aa25.35■■□□□ 1.65
COL9A3-212ENST00000481800 COL22A1Q8NFW1 1626 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-212ENST00000481800 HAP1P54257 671 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-212ENST00000481800 USP21Q9UK80 565 aa25.34■■□□□ 1.65
COL9A3-212ENST00000481800 PRR36Q9H6K5 1346 aa25.34■■□□□ 1.65
COL9A3-212ENST00000481800 SBNO1A3KN83 1393 aa25.33■■□□□ 1.65
COL9A3-212ENST00000481800 TULP4Q9NRJ4 1543 aa25.33■■□□□ 1.65
COL9A3-212ENST00000481800 GPRASP1Q5JY77 1395 aa25.32■■□□□ 1.64
COL9A3-212ENST00000481800 KIAA1210Q9ULL0 1709 aa25.32■■□□□ 1.64
COL9A3-212ENST00000481800 TNS3Q68CZ2 1445 aa25.32■■□□□ 1.64
COL9A3-212ENST00000481800 NGDNQ8NEJ9 315 aaKnown RBP25.32■■□□□ 1.64
COL9A3-212ENST00000481800 RBM6P78332 1123 aaKnown RBP25.31■■□□□ 1.64
COL9A3-212ENST00000481800 FNBP4Q8N3X1 1017 aaPredicted RBP25.31■■□□□ 1.64
COL9A3-212ENST00000481800 NUDT16Q96DE0 195 aaKnown RBP25.31■■□□□ 1.64
COL9A3-212ENST00000481800 CDK19Q9BWU1 502 aa25.31■■□□□ 1.64
COL9A3-212ENST00000481800 PLEKHG5O94827 1062 aa25.3■■□□□ 1.64
COL9A3-212ENST00000481800 ARHGEF10O15013 1369 aa25.3■■□□□ 1.64
COL9A3-212ENST00000481800 ARHGEF28Q8N1W1 1705 aaKnown RBP25.29■■□□□ 1.64
COL9A3-212ENST00000481800 TRPC5Q9UL62 973 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-212ENST00000481800 CENPJQ9HC77 1338 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-212ENST00000481800 USP32Q8NFA0 1604 aa25.29■■□□□ 1.64
COL9A3-212ENST00000481800 RGPD8O14715 1765 aaPredicted RBP25.28■■□□□ 1.64
COL9A3-212ENST00000481800 CABLES1Q8TDN4 633 aa25.26■■□□□ 1.63
COL9A3-212ENST00000481800 CDK12Q9NYV4 1490 aaPredicted RBP25.25■■□□□ 1.63
COL9A3-212ENST00000481800 PAK3O75914 559 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-212ENST00000481800 ROCK2O75116 1388 aaKnown RBP25.23■■□□□ 1.63
COL9A3-212ENST00000481800 SRPK2P78362 688 aaKnown RBP25.23■■□□□ 1.63
COL9A3-212ENST00000481800 CCDC61Q9Y6R9 512 aa25.23■■□□□ 1.63
COL9A3-212ENST00000481800 ATP7BP35670 1465 aa25.22■■□□□ 1.63
COL9A3-212ENST00000481800 TONSLQ96HA7 1378 aa25.2■■□□□ 1.63
COL9A3-212ENST00000481800 ATRNO75882 1429 aa25.19■■□□□ 1.62
COL9A3-212ENST00000481800 BCL9LQ86UU0 1499 aa25.18■■□□□ 1.62
COL9A3-212ENST00000481800 UNC5CLQ8IV45 518 aa25.18■■□□□ 1.62
COL9A3-212ENST00000481800 NBPF8Q3BBV2 869 aa25.17■■□□□ 1.62
COL9A3-212ENST00000481800 CABP2Q9NPB3 220 aa25.17■■□□□ 1.62
COL9A3-212ENST00000481800 RGS12O14924 1447 aa25.17■■□□□ 1.62
COL9A3-212ENST00000481800 ACEP12821 1306 aa25.16■■□□□ 1.62
COL9A3-212ENST00000481800 PLEKHG3A1L390 1219 aa25.16■■□□□ 1.62
COL9A3-212ENST00000481800 GJD4Q96KN9 370 aaPredicted RBP25.14■■□□□ 1.62
COL9A3-212ENST00000481800 TRPM1Q7Z4N2 1603 aa25.14■■□□□ 1.61
COL9A3-212ENST00000481800 EVC2Q86UK5 1308 aa25.13■■□□□ 1.61
COL9A3-212ENST00000481800 SLIT2O94813 1529 aa25.13■■□□□ 1.61
COL9A3-212ENST00000481800 UPF1Q92900 1129 aaKnown RBP eCLIP25.13■■□□□ 1.61
COL9A3-212ENST00000481800 POLR3AO14802 1390 aaPredicted RBP25.13■■□□□ 1.61
COL9A3-212ENST00000481800 ITSN1Q15811 1721 aa25.12■■□□□ 1.61
COL9A3-212ENST00000481800 FAM83GA6ND36 823 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms