RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 POM121CA8CG34 1229 aa9.3□□□□□ -0.92
UPF3B-203ENST00000478840 IRF5Q13568 498 aa9.3□□□□□ -0.92
UPF3B-203ENST00000478840 GPR37L1O60883 481 aa9.29□□□□□ -0.92
UPF3B-203ENST00000478840 MTMR2Q13614 643 aa9.29□□□□□ -0.92
UPF3B-203ENST00000478840 ANKRD13DQ6ZTN6 518 aa9.29□□□□□ -0.92
UPF3B-203ENST00000478840 ARHGAP33O14559 1287 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 WASHC4Q2M389 1173 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 DMRTA1Q5VZB9 504 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 SPNS2Q8IVW8 549 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 KCTD17Q8N5Z5 321 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 TRIM34Q9BYJ4 488 aa9.28□□□□□ -0.92
UPF3B-203ENST00000478840 CTDSPL2Q05D32 466 aa9.27□□□□□ -0.93
UPF3B-203ENST00000478840 FAM98CQ17RN3 349 aaKnown RBP9.27□□□□□ -0.93
UPF3B-203ENST00000478840 GRIPAP1Q4V328 841 aa9.27□□□□□ -0.93
UPF3B-203ENST00000478840 HELBQ8NG08 1087 aaPredicted RBP9.27□□□□□ -0.93
UPF3B-203ENST00000478840 HLA-CQ95604 372 aa9.27□□□□□ -0.93
UPF3B-203ENST00000478840 SLC4A3P48751 1232 aa9.26□□□□□ -0.93
UPF3B-203ENST00000478840 HDGFP51858 240 aaKnown RBP9.26□□□□□ -0.93
UPF3B-203ENST00000478840 GUCA2AQ02747 115 aa9.26□□□□□ -0.93
UPF3B-203ENST00000478840 SLF2Q8IX21 1173 aa9.26□□□□□ -0.93
UPF3B-203ENST00000478840 RETREG2Q8NC44 543 aa9.26□□□□□ -0.93
UPF3B-203ENST00000478840 HMX1Q9NP08 348 aaPredicted RBP9.26□□□□□ -0.93
UPF3B-203ENST00000478840 LAPTM4BQ86VI4 370 aa9.25□□□□□ -0.93
UPF3B-203ENST00000478840 CFAP99D6REC4 459 aa9.24□□□□□ -0.93
UPF3B-203ENST00000478840 PBX2P40425 430 aa9.24□□□□□ -0.93
UPF3B-203ENST00000478840 ADAMTS19Q8TE59 1207 aa9.24□□□□□ -0.93
UPF3B-203ENST00000478840 SEPT9Q9UHD8 586 aaPredicted RBP9.24□□□□□ -0.93
UPF3B-203ENST00000478840 LSM11P83369 360 aaKnown RBP eCLIP9.23□□□□□ -0.93
UPF3B-203ENST00000478840 FUT2Q10981 343 aa9.23□□□□□ -0.93
UPF3B-203ENST00000478840 HDGFL1Q5TGJ6 251 aa9.23□□□□□ -0.93
UPF3B-203ENST00000478840 VPS9D1Q9Y2B5 631 aa9.23□□□□□ -0.93
UPF3B-203ENST00000478840 ATP6V1AP38606 617 aa9.22□□□□□ -0.93
UPF3B-203ENST00000478840 LRRN4Q8WUT4 740 aa9.22□□□□□ -0.93
UPF3B-203ENST00000478840 CFHP08603 1231 aa9.21□□□□□ -0.94
UPF3B-203ENST00000478840 PDE4CQ08493 712 aa9.21□□□□□ -0.94
UPF3B-203ENST00000478840 ALG2Q9H553 416 aa9.21□□□□□ -0.94
UPF3B-203ENST00000478840 CCDC9Q9Y3X0 531 aaKnown RBP9.21□□□□□ -0.94
UPF3B-203ENST00000478840 ACIN1Q9UKV3 1341 aaKnown RBP9.21□□□□□ -0.94
UPF3B-203ENST00000478840 BHMG1C9JSJ3 638 aaPredicted RBP9.2□□□□□ -0.94
UPF3B-203ENST00000478840 C6orf229H3BNL8 230 aa9.2□□□□□ -0.94
UPF3B-203ENST00000478840 SRPK2P78362 688 aaKnown RBP9.2□□□□□ -0.94
UPF3B-203ENST00000478840 SAMD7Q7Z3H4 446 aa9.2□□□□□ -0.94
UPF3B-203ENST00000478840 PBXIP1Q96AQ6 731 aa9.2□□□□□ -0.94
UPF3B-203ENST00000478840 SOX11P35716 441 aa9.19□□□□□ -0.94
UPF3B-203ENST00000478840 MMRN1Q13201 1228 aa9.19□□□□□ -0.94
UPF3B-203ENST00000478840 CFAP70Q5T0N1 1121 aa9.19□□□□□ -0.94
UPF3B-203ENST00000478840 DESI1Q6ICB0 168 aa9.19□□□□□ -0.94
UPF3B-203ENST00000478840 NBPF3Q9H094 633 aa9.18□□□□□ -0.94
UPF3B-203ENST00000478840 KMT5BQ4FZB7 885 aa9.17□□□□□ -0.94
UPF3B-203ENST00000478840 RETREG3Q86VR2 466 aa9.17□□□□□ -0.94
UPF3B-203ENST00000478840 PRR7Q8TB68 274 aa9.17□□□□□ -0.94
UPF3B-203ENST00000478840 PPP1R12CQ9BZL4 782 aa9.17□□□□□ -0.94
UPF3B-203ENST00000478840 VAC14Q08AM6 782 aa9.16□□□□□ -0.94
UPF3B-203ENST00000478840 MORN1Q5T089 497 aa9.16□□□□□ -0.94
UPF3B-203ENST00000478840 ADGRD1Q6QNK2 874 aa9.16□□□□□ -0.94
UPF3B-203ENST00000478840 EPS8L1Q8TE68 723 aa9.16□□□□□ -0.94
UPF3B-203ENST00000478840 TSC1Q92574 1164 aa9.16□□□□□ -0.94
UPF3B-203ENST00000478840 TK2O00142 265 aa9.15□□□□□ -0.94
UPF3B-203ENST00000478840 SYMPKQ92797 1274 aaKnown RBP9.15□□□□□ -0.94
UPF3B-203ENST00000478840 ZFRQ96KR1 1074 aaKnown RBP9.15□□□□□ -0.94
UPF3B-203ENST00000478840 ACTN4O43707 911 aaKnown RBP9.14□□□□□ -0.95
UPF3B-203ENST00000478840 Q3C1V9 767 aa9.14□□□□□ -0.95
UPF3B-203ENST00000478840 USTQ9Y2C2 406 aa9.14□□□□□ -0.95
UPF3B-203ENST00000478840 PER1O15534 1290 aaPredicted RBP9.13□□□□□ -0.95
UPF3B-203ENST00000478840 RANGAP1P46060 587 aaPredicted RBP9.13□□□□□ -0.95
UPF3B-203ENST00000478840 NR6A1Q15406 480 aa9.13□□□□□ -0.95
UPF3B-203ENST00000478840 AEBP1Q8IUX7 1158 aa9.13□□□□□ -0.95
UPF3B-203ENST00000478840 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.12□□□□□ -0.95
UPF3B-203ENST00000478840 PALM3A6NDB9 673 aaPredicted RBP9.12□□□□□ -0.95
UPF3B-203ENST00000478840 LYPD8Q6UX82 237 aa9.12□□□□□ -0.95
UPF3B-203ENST00000478840 UCN2Q96RP3 112 aa9.12□□□□□ -0.95
UPF3B-203ENST00000478840 PRR14Q9BWN1 585 aa9.12□□□□□ -0.95
UPF3B-203ENST00000478840 SLC27A5Q9Y2P5 690 aa9.12□□□□□ -0.95
UPF3B-203ENST00000478840 SALL2Q9Y467 1007 aaPredicted RBP9.12□□□□□ -0.95
UPF3B-203ENST00000478840 PATL2C9JE40 543 aaKnown RBP9.11□□□□□ -0.95
UPF3B-203ENST00000478840 NPM2Q86SE8 214 aaKnown RBP9.11□□□□□ -0.95
UPF3B-203ENST00000478840 HRO43593 1189 aa9.1□□□□□ -0.95
UPF3B-203ENST00000478840 PNMA1Q8ND90 353 aa9.1□□□□□ -0.95
UPF3B-203ENST00000478840 MYT1LQ9UL68 1186 aa9.1□□□□□ -0.95
UPF3B-203ENST00000478840 RNF40O75150 1001 aa9.09□□□□□ -0.95
UPF3B-203ENST00000478840 LRCH3Q96II8 777 aa9.09□□□□□ -0.95
UPF3B-203ENST00000478840 BRD1O95696 1058 aa9.08□□□□□ -0.96
UPF3B-203ENST00000478840 CSB-PGBD3P0DP91 1061 aa9.08□□□□□ -0.96
UPF3B-203ENST00000478840 RFX1P22670 979 aa9.08□□□□□ -0.96
UPF3B-203ENST00000478840 MRPL50Q8N5N7 158 aaKnown RBP9.08□□□□□ -0.96
UPF3B-203ENST00000478840 RNF166Q96A37 237 aaPredicted RBP9.08□□□□□ -0.96
UPF3B-203ENST00000478840 TFIP11Q9UBB9 837 aaKnown RBP9.08□□□□□ -0.96
UPF3B-203ENST00000478840 ATG7O95352 703 aa9.07□□□□□ -0.96
UPF3B-203ENST00000478840 EIF4G2P78344 907 aaKnown RBP eCLIP9.07□□□□□ -0.962e-9■■■■■ 39.4
UPF3B-203ENST00000478840 NR1H3Q13133 447 aa9.07□□□□□ -0.96
UPF3B-203ENST00000478840 SEMA3FQ13275 785 aa9.07□□□□□ -0.96
UPF3B-203ENST00000478840 PUS10Q3MIT2 529 aaKnown RBP9.07□□□□□ -0.96
UPF3B-203ENST00000478840 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.07□□□□□ -0.96
UPF3B-203ENST00000478840 MAFBQ9Y5Q3 323 aaPredicted RBP9.07□□□□□ -0.96
UPF3B-203ENST00000478840 ZC3H4Q9UPT8 1303 aaKnown RBP9.06□□□□□ -0.96
UPF3B-203ENST00000478840 LMOD1P29536 600 aaPredicted RBP9.06□□□□□ -0.96
UPF3B-203ENST00000478840 KCNA1Q09470 495 aa9.06□□□□□ -0.96
UPF3B-203ENST00000478840 BRICD5Q6PL45 260 aa9.06□□□□□ -0.96
UPF3B-203ENST00000478840 USB1Q9BQ65 265 aaKnown RBP9.06□□□□□ -0.96
UPF3B-203ENST00000478840 F12P00748 615 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms