RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 C6orf229H3BNL8 230 aa7.21□□□□□ -1.26
VPS13D-207ENST00000476169 PDIA4P13667 645 aaKnown RBP7.21□□□□□ -1.26
VPS13D-207ENST00000476169 CTDSPL2Q05D32 466 aa7.2□□□□□ -1.26
VPS13D-207ENST00000476169 GJD4Q96KN9 370 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-207ENST00000476169 CALR3Q96L12 384 aaKnown RBP7.2□□□□□ -1.26
VPS13D-207ENST00000476169 POM121CA8CG34 1229 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 ST18O60284 1047 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 ATP6V1AP38606 617 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 KMT5BQ4FZB7 885 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 ZNF687Q8N1G0 1237 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 MARVELD3Q96A59 401 aa7.19□□□□□ -1.26
VPS13D-207ENST00000476169 CCDC9Q9Y3X0 531 aaKnown RBP7.19□□□□□ -1.26
VPS13D-207ENST00000476169 CFAP99D6REC4 459 aa7.18□□□□□ -1.26
VPS13D-207ENST00000476169 GLMNQ92990 594 aa7.18□□□□□ -1.26
VPS13D-207ENST00000476169 HMX1Q9NP08 348 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-207ENST00000476169 FAM205CA6NFA0 338 aa7.17□□□□□ -1.26
VPS13D-207ENST00000476169 LRRN4Q8WUT4 740 aa7.17□□□□□ -1.26
VPS13D-207ENST00000476169 ZFRQ96KR1 1074 aaKnown RBP7.17□□□□□ -1.26
VPS13D-207ENST00000476169 TRIM34Q9BYJ4 488 aa7.17□□□□□ -1.26
VPS13D-207ENST00000476169 BHMG1C9JSJ3 638 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-207ENST00000476169 TK2O00142 265 aa7.16□□□□□ -1.26
VPS13D-207ENST00000476169 IRF5Q13568 498 aa7.16□□□□□ -1.26
VPS13D-207ENST00000476169 WASHC4Q2M389 1173 aa7.16□□□□□ -1.26
VPS13D-207ENST00000476169 LHX8Q68G74 356 aa7.16□□□□□ -1.26
VPS13D-207ENST00000476169 MRPL50Q8N5N7 158 aaKnown RBP7.16□□□□□ -1.26
VPS13D-207ENST00000476169 NECTIN2Q92692 538 aa7.16□□□□□ -1.26
VPS13D-207ENST00000476169 PRR7Q8TB68 274 aa7.15□□□□□ -1.26
VPS13D-207ENST00000476169 SYMPKQ92797 1274 aaKnown RBP7.15□□□□□ -1.26
VPS13D-207ENST00000476169 LRCH3Q96II8 777 aa7.15□□□□□ -1.26
VPS13D-207ENST00000476169 Q3C1V9 767 aa7.14□□□□□ -1.27
VPS13D-207ENST00000476169 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.14□□□□□ -1.27
VPS13D-207ENST00000476169 ACTN4O43707 911 aaKnown RBP7.13□□□□□ -1.27
VPS13D-207ENST00000476169 GPR37L1O60883 481 aa7.13□□□□□ -1.27
VPS13D-207ENST00000476169 PUS10Q3MIT2 529 aaKnown RBP7.13□□□□□ -1.27
VPS13D-207ENST00000476169 MORN1Q5T089 497 aa7.13□□□□□ -1.27
VPS13D-207ENST00000476169 HDGFL1Q5TGJ6 251 aa7.13□□□□□ -1.27
VPS13D-207ENST00000476169 RETREG3Q86VR2 466 aa7.13□□□□□ -1.27
VPS13D-207ENST00000476169 PRR14Q9BWN1 585 aa7.13□□□□□ -1.27
VPS13D-207ENST00000476169 PPP1R15AO75807 674 aaPredicted RBP7.12□□□□□ -1.27
VPS13D-207ENST00000476169 VAC14Q08AM6 782 aa7.12□□□□□ -1.27
VPS13D-207ENST00000476169 ADGRD1Q6QNK2 874 aa7.12□□□□□ -1.27
VPS13D-207ENST00000476169 EPS8L1Q8TE68 723 aa7.12□□□□□ -1.27
VPS13D-207ENST00000476169 HS3ST6Q96QI5 342 aa7.12□□□□□ -1.27
VPS13D-207ENST00000476169 SLC27A5Q9Y2P5 690 aa7.12□□□□□ -1.27
VPS13D-207ENST00000476169 LSM11P83369 360 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS13D-207ENST00000476169 NR6A1Q15406 480 aa7.11□□□□□ -1.27
VPS13D-207ENST00000476169 ADAMTS19Q8TE59 1207 aa7.11□□□□□ -1.27
VPS13D-207ENST00000476169 STAC3Q96MF2 364 aa7.11□□□□□ -1.27
VPS13D-207ENST00000476169 TRAIPQ9BWF2 469 aa7.11□□□□□ -1.27
VPS13D-207ENST00000476169 GOLGA8CPA6NN73 597 aa7.1□□□□□ -1.27
VPS13D-207ENST00000476169 PER1O15534 1290 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-207ENST00000476169 RETREG2Q8NC44 543 aa7.1□□□□□ -1.27
VPS13D-207ENST00000476169 ANKK1Q8NFD2 765 aa7.1□□□□□ -1.27
VPS13D-207ENST00000476169 ACIN1Q9UKV3 1341 aaKnown RBP7.09□□□□□ -1.27
VPS13D-207ENST00000476169 POTEB3A0JP26 581 aa7.09□□□□□ -1.27
VPS13D-207ENST00000476169 DESI1Q6ICB0 168 aa7.09□□□□□ -1.27
VPS13D-207ENST00000476169 POTEBQ6S5H4 581 aa7.09□□□□□ -1.27
VPS13D-207ENST00000476169 PNMA1Q8ND90 353 aa7.09□□□□□ -1.27
VPS13D-207ENST00000476169 FAM163AQ96GL9 167 aaPredicted RBP7.09□□□□□ -1.27
VPS13D-207ENST00000476169 PPP4CP60510 307 aa7.08□□□□□ -1.28
VPS13D-207ENST00000476169 RNF19BQ6ZMZ0 732 aa7.08□□□□□ -1.28
VPS13D-207ENST00000476169 HPS5Q9UPZ3 1129 aa7.08□□□□□ -1.28
VPS13D-207ENST00000476169 HRO43593 1189 aa7.07□□□□□ -1.28
VPS13D-207ENST00000476169 SOX11P35716 441 aa7.07□□□□□ -1.28
VPS13D-207ENST00000476169 BLOC1S3Q6QNY0 202 aa7.07□□□□□ -1.28
VPS13D-207ENST00000476169 LYPD8Q6UX82 237 aa7.07□□□□□ -1.28
VPS13D-207ENST00000476169 USB1Q9BQ65 265 aaKnown RBP7.07□□□□□ -1.28
VPS13D-207ENST00000476169 ALG2Q9H553 416 aa7.07□□□□□ -1.28
VPS13D-207ENST00000476169 SOWAHBA6NEL2 793 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 NR1I2O75469 434 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 RFX1P22670 979 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 BCAMP50895 628 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 KCTD17Q8N5Z5 321 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 PBXIP1Q96AQ6 731 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 PPP1R12CQ9BZL4 782 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 PCDHB3Q9Y5E6 796 aa7.06□□□□□ -1.28
VPS13D-207ENST00000476169 FMNL1O95466 1100 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-207ENST00000476169 APLP1P51693 650 aa7.05□□□□□ -1.28
VPS13D-207ENST00000476169 SEMA3FQ13275 785 aa7.05□□□□□ -1.28
VPS13D-207ENST00000476169 CFAP70Q5T0N1 1121 aa7.05□□□□□ -1.28
VPS13D-207ENST00000476169 BRICD5Q6PL45 260 aa7.05□□□□□ -1.28
VPS13D-207ENST00000476169 ANKRD13DQ6ZTN6 518 aa7.05□□□□□ -1.28
VPS13D-207ENST00000476169 TSR3Q9UJK0 312 aaKnown RBP7.05□□□□□ -1.28
VPS13D-207ENST00000476169 SALL2Q9Y467 1007 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-207ENST00000476169 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-207ENST00000476169 PDE4CQ08493 712 aa7.04□□□□□ -1.28
VPS13D-207ENST00000476169 AEBP1Q8IUX7 1158 aa7.04□□□□□ -1.28
VPS13D-207ENST00000476169 SCUBE3Q8IX30 993 aa7.04□□□□□ -1.28
VPS13D-207ENST00000476169 WNT2BQ93097 391 aa7.04□□□□□ -1.28
VPS13D-207ENST00000476169 PALM3A6NDB9 673 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-207ENST00000476169 JUNDP17535 347 aa7.03□□□□□ -1.28
VPS13D-207ENST00000476169 EIF4G2P78344 907 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS13D-207ENST00000476169 LMOD1P29536 600 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-207ENST00000476169 NR1H3Q13133 447 aa7.02□□□□□ -1.29
VPS13D-207ENST00000476169 THAP11Q96EK4 314 aa7.02□□□□□ -1.29
VPS13D-207ENST00000476169 UCN2Q96RP3 112 aa7.02□□□□□ -1.29
VPS13D-207ENST00000476169 TFIP11Q9UBB9 837 aaKnown RBP7.02□□□□□ -1.29
VPS13D-207ENST00000476169 FBXO45P0C2W1 286 aa7.01□□□□□ -1.29
VPS13D-207ENST00000476169 CSB-PGBD3P0DP91 1061 aa7.01□□□□□ -1.29
VPS13D-207ENST00000476169 PTPRNQ16849 979 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms