RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 WAPLQ7Z5K2 1190 aa20.85■□□□□ 0.93
UPF3A-204ENST00000475218 ORAI2Q96SN7 254 aa20.85■□□□□ 0.93
UPF3A-204ENST00000475218 C14orf93Q9H972 538 aaKnown RBP20.85■□□□□ 0.93
UPF3A-204ENST00000475218 YTHDC2Q9H6S0 1430 aaKnown RBP20.84■□□□□ 0.93
UPF3A-204ENST00000475218 CFAP70Q5T0N1 1121 aa20.82■□□□□ 0.92
UPF3A-204ENST00000475218 PNPLA6Q8IY17 1366 aa20.79■□□□□ 0.92
UPF3A-204ENST00000475218 ADGRB1O14514 1584 aa20.79■□□□□ 0.92
UPF3A-204ENST00000475218 SOS2Q07890 1332 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-204ENST00000475218 DHX57Q6P158 1386 aaKnown RBP20.77■□□□□ 0.92
UPF3A-204ENST00000475218 LRRC59Q96AG4 307 aaKnown RBP20.77■□□□□ 0.92
UPF3A-204ENST00000475218 FMN2Q9NZ56 1722 aa20.77■□□□□ 0.92
UPF3A-204ENST00000475218 SIRT1Q96EB6 747 aa20.76■□□□□ 0.91
UPF3A-204ENST00000475218 NUTM2BA6NNL0 878 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-204ENST00000475218 NUTM2EB1AL46 878 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-204ENST00000475218 NUTM2AQ8IVF1 878 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-204ENST00000475218 PXDNQ92626 1479 aa20.74■□□□□ 0.91
UPF3A-204ENST00000475218 DLC1Q96QB1 1528 aa20.73■□□□□ 0.91
UPF3A-204ENST00000475218 NUTM2FA1L443 756 aa20.72■□□□□ 0.91
UPF3A-204ENST00000475218 ESCO1Q5FWF5 840 aa20.72■□□□□ 0.91
UPF3A-204ENST00000475218 DCAF11Q8TEB1 546 aa20.72■□□□□ 0.91
UPF3A-204ENST00000475218 MEX3CQ5U5Q3 659 aaKnown RBP20.71■□□□□ 0.91
UPF3A-204ENST00000475218 KDM2AQ9Y2K7 1162 aa20.71■□□□□ 0.91
UPF3A-204ENST00000475218 COL22A1Q8NFW1 1626 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-204ENST00000475218 RGPD8O14715 1765 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-204ENST00000475218 PRAM1Q96QH2 718 aa20.69■□□□□ 0.9
UPF3A-204ENST00000475218 FOXO3O43524 673 aa20.67■□□□□ 0.9
UPF3A-204ENST00000475218 USP32Q8NFA0 1604 aa20.67■□□□□ 0.9
UPF3A-204ENST00000475218 NPHP3Q7Z494 1330 aa20.67■□□□□ 0.9
UPF3A-204ENST00000475218 XPCQ01831 940 aaPredicted RBP20.67■□□□□ 0.9
UPF3A-204ENST00000475218 ADGRB2O60241 1585 aa20.66■□□□□ 0.9
UPF3A-204ENST00000475218 AFF2P51816 1311 aa20.66■□□□□ 0.9
UPF3A-204ENST00000475218 SAFB2Q14151 953 aaKnown RBP eCLIP20.66■□□□□ 0.9
UPF3A-204ENST00000475218 KIF1AQ12756 1690 aa20.65■□□□□ 0.9
UPF3A-204ENST00000475218 ZNF772Q68DY9 489 aaPredicted RBP20.65■□□□□ 0.9
UPF3A-204ENST00000475218 TRAK1Q9UPV9 953 aa20.64■□□□□ 0.9
UPF3A-204ENST00000475218 STAC3Q96MF2 364 aa20.64■□□□□ 0.89
UPF3A-204ENST00000475218 C8orf37Q96NL8 207 aa20.62■□□□□ 0.89
UPF3A-204ENST00000475218 ARHGEF28Q8N1W1 1705 aaKnown RBP20.62■□□□□ 0.89
UPF3A-204ENST00000475218 ADAMTS2O95450 1211 aa20.62■□□□□ 0.89
UPF3A-204ENST00000475218 POGKQ9P215 609 aa20.59■□□□□ 0.89
UPF3A-204ENST00000475218 HIRIP3Q9BW71 556 aaPredicted RBP20.58■□□□□ 0.89
UPF3A-204ENST00000475218 KIAA1210Q9ULL0 1709 aa20.58■□□□□ 0.88
UPF3A-204ENST00000475218 ANKARQ7Z5J8 1434 aa20.57■□□□□ 0.88
UPF3A-204ENST00000475218 PHF8Q9UPP1 1060 aa20.57■□□□□ 0.88
UPF3A-204ENST00000475218 SPATA31A3Q5VYP0 1347 aa20.57■□□□□ 0.88
UPF3A-204ENST00000475218 PRR36Q9H6K5 1346 aa20.57■□□□□ 0.88
UPF3A-204ENST00000475218 MARF1Q9Y4F3 1742 aaKnown RBP20.57■□□□□ 0.88
UPF3A-204ENST00000475218 MINK1Q8N4C8 1332 aaPredicted RBP20.56■□□□□ 0.88
UPF3A-204ENST00000475218 RXRBP28702 533 aa20.56■□□□□ 0.88
UPF3A-204ENST00000475218 CDK12Q9NYV4 1490 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-204ENST00000475218 KRT28Q7Z3Y7 464 aa20.55■□□□□ 0.88
UPF3A-204ENST00000475218 NGLY1Q96IV0 654 aa20.54■□□□□ 0.88
UPF3A-204ENST00000475218 TULP4Q9NRJ4 1543 aa20.54■□□□□ 0.88
UPF3A-204ENST00000475218 FNBP4Q8N3X1 1017 aaPredicted RBP20.54■□□□□ 0.88
UPF3A-204ENST00000475218 NBPF1Q3BBV0 1214 aa20.53■□□□□ 0.88
UPF3A-204ENST00000475218 QTRT2Q9H974 415 aaKnown RBP20.53■□□□□ 0.88
UPF3A-204ENST00000475218 RGS12O14924 1447 aa20.52■□□□□ 0.88
UPF3A-204ENST00000475218 TNS3Q68CZ2 1445 aa20.52■□□□□ 0.88
UPF3A-204ENST00000475218 TRPM3Q9HCF6 1732 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-204ENST00000475218 WASLO00401 505 aaPredicted RBP20.51■□□□□ 0.87
UPF3A-204ENST00000475218 PMFBP1Q8TBY8 1022 aa20.51■□□□□ 0.87
UPF3A-204ENST00000475218 BCL9LQ86UU0 1499 aa20.51■□□□□ 0.87
UPF3A-204ENST00000475218 SIN3AQ96ST3 1273 aa20.51■□□□□ 0.87
UPF3A-204ENST00000475218 ABCA3Q99758 1704 aa20.5■□□□□ 0.87
UPF3A-204ENST00000475218 SBNO1A3KN83 1393 aa20.5■□□□□ 0.87
UPF3A-204ENST00000475218 USP21Q9UK80 565 aa20.49■□□□□ 0.87
UPF3A-204ENST00000475218 ATP7BP35670 1465 aa20.49■□□□□ 0.87
UPF3A-204ENST00000475218 ATRNO75882 1429 aa20.49■□□□□ 0.87
UPF3A-204ENST00000475218 RBM6P78332 1123 aaKnown RBP20.49■□□□□ 0.87
UPF3A-204ENST00000475218 L3MBTL2Q969R5 705 aa20.49■□□□□ 0.87
UPF3A-204ENST00000475218 ALS2Q96Q42 1657 aa20.47■□□□□ 0.87
UPF3A-204ENST00000475218 CABLES1Q8TDN4 633 aa20.46■□□□□ 0.87
UPF3A-204ENST00000475218 EIF3AQ14152 1382 aaKnown RBP20.46■□□□□ 0.87
UPF3A-204ENST00000475218 PSME1Q06323 249 aa20.45■□□□□ 0.86
UPF3A-204ENST00000475218 UPF1Q92900 1129 aaKnown RBP eCLIP20.45■□□□□ 0.86
UPF3A-204ENST00000475218 SLIT2O94813 1529 aa20.45■□□□□ 0.86
UPF3A-204ENST00000475218 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.45■□□□□ 0.86
UPF3A-204ENST00000475218 TOPAZ1Q8N9V7 1692 aa20.44■□□□□ 0.86
UPF3A-204ENST00000475218 TRPC5Q9UL62 973 aaPredicted RBP20.44■□□□□ 0.86
UPF3A-204ENST00000475218 ITSN1Q15811 1721 aa20.43■□□□□ 0.86
UPF3A-204ENST00000475218 TRPM1Q7Z4N2 1603 aa20.42■□□□□ 0.86
UPF3A-204ENST00000475218 CRYBG1Q9Y4K1 1723 aa20.42■□□□□ 0.86
UPF3A-204ENST00000475218 ARHGEF10O15013 1369 aa20.42■□□□□ 0.86
UPF3A-204ENST00000475218 NUDT16Q96DE0 195 aaKnown RBP20.41■□□□□ 0.86
UPF3A-204ENST00000475218 CDK19Q9BWU1 502 aa20.41■□□□□ 0.86
UPF3A-204ENST00000475218 EP400Q96L91 3159 aa20.41■□□□□ 0.86
UPF3A-204ENST00000475218 PLCH1Q4KWH8 1693 aa20.39■□□□□ 0.86
UPF3A-204ENST00000475218 PLEKHG5O94827 1062 aa20.39■□□□□ 0.86
UPF3A-204ENST00000475218 GLI3P10071 1580 aa20.39■□□□□ 0.86
UPF3A-204ENST00000475218 NEUROD1Q13562 356 aa20.39■□□□□ 0.85
UPF3A-204ENST00000475218 LMOD2Q6P5Q4 547 aa20.39■□□□□ 0.85
UPF3A-204ENST00000475218 QRICH2Q9H0J4 1663 aa20.38■□□□□ 0.85
UPF3A-204ENST00000475218 GPRASP1Q5JY77 1395 aa20.38■□□□□ 0.85
UPF3A-204ENST00000475218 UNC5CLQ8IV45 518 aa20.36■□□□□ 0.85
UPF3A-204ENST00000475218 POLR3AO14802 1390 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-204ENST00000475218 NWD2Q9ULI1 1742 aa20.36■□□□□ 0.85
UPF3A-204ENST00000475218 RALGAPBQ86X10 1494 aa20.36■□□□□ 0.85
UPF3A-204ENST00000475218 NGDNQ8NEJ9 315 aaKnown RBP20.36■□□□□ 0.85
UPF3A-204ENST00000475218 GJD4Q96KN9 370 aaPredicted RBP20.36■□□□□ 0.85
UPF3A-204ENST00000475218 CENPJQ9HC77 1338 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms