RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 PLEKHH1Q9ULM0 1364 aa13.29□□□□□ -0.28
USF1-204ENST00000472217 WAPLQ7Z5K2 1190 aa13.28□□□□□ -0.28
USF1-204ENST00000472217 ORAI2Q96SN7 254 aa13.28□□□□□ -0.28
USF1-204ENST00000472217 C14orf93Q9H972 538 aaKnown RBP13.28□□□□□ -0.28
USF1-204ENST00000472217 CFAP70Q5T0N1 1121 aa13.27□□□□□ -0.29
USF1-204ENST00000472217 MEX3CQ5U5Q3 659 aaKnown RBP13.26□□□□□ -0.29
USF1-204ENST00000472217 PNPLA6Q8IY17 1366 aa13.26□□□□□ -0.29
USF1-204ENST00000472217 LRRC59Q96AG4 307 aaKnown RBP13.26□□□□□ -0.29
USF1-204ENST00000472217 FMN2Q9NZ56 1722 aa13.26□□□□□ -0.29
USF1-204ENST00000472217 NUTM2BA6NNL0 878 aaPredicted RBP13.25□□□□□ -0.29
USF1-204ENST00000472217 NUTM2EB1AL46 878 aaPredicted RBP13.25□□□□□ -0.29
USF1-204ENST00000472217 NUTM2AQ8IVF1 878 aaPredicted RBP13.25□□□□□ -0.29
USF1-204ENST00000472217 ADGRB1O14514 1584 aa13.24□□□□□ -0.29
USF1-204ENST00000472217 DHX57Q6P158 1386 aaKnown RBP13.24□□□□□ -0.29
USF1-204ENST00000472217 SOS2Q07890 1332 aaPredicted RBP13.24□□□□□ -0.29
USF1-204ENST00000472217 DLC1Q96QB1 1528 aa13.23□□□□□ -0.29
USF1-204ENST00000472217 NUTM2FA1L443 756 aa13.22□□□□□ -0.29
USF1-204ENST00000472217 ESCO1Q5FWF5 840 aa13.22□□□□□ -0.29
USF1-204ENST00000472217 DCAF11Q8TEB1 546 aa13.22□□□□□ -0.29
USF1-204ENST00000472217 SIRT1Q96EB6 747 aa13.22□□□□□ -0.29
USF1-204ENST00000472217 PXDNQ92626 1479 aa13.22□□□□□ -0.29
USF1-204ENST00000472217 KDM2AQ9Y2K7 1162 aa13.21□□□□□ -0.29
USF1-204ENST00000472217 KIF1AQ12756 1690 aa13.21□□□□□ -0.3
USF1-204ENST00000472217 COL22A1Q8NFW1 1626 aaPredicted RBP13.21□□□□□ -0.3
USF1-204ENST00000472217 NPHP3Q7Z494 1330 aa13.2□□□□□ -0.3
USF1-204ENST00000472217 ZNF772Q68DY9 489 aaPredicted RBP13.2□□□□□ -0.3
USF1-204ENST00000472217 ADGRB2O60241 1585 aa13.2□□□□□ -0.3
USF1-204ENST00000472217 SAFB2Q14151 953 aaKnown RBP eCLIP13.19□□□□□ -0.3
USF1-204ENST00000472217 PRAM1Q96QH2 718 aa13.19□□□□□ -0.3
USF1-204ENST00000472217 RGPD8O14715 1765 aaPredicted RBP13.19□□□□□ -0.3
USF1-204ENST00000472217 AFF2P51816 1311 aa13.18□□□□□ -0.3
USF1-204ENST00000472217 FOXO3O43524 673 aa13.18□□□□□ -0.3
USF1-204ENST00000472217 XPCQ01831 940 aaPredicted RBP13.18□□□□□ -0.3
USF1-204ENST00000472217 STAC3Q96MF2 364 aa13.18□□□□□ -0.3
USF1-204ENST00000472217 USP32Q8NFA0 1604 aa13.17□□□□□ -0.3
USF1-204ENST00000472217 C8orf37Q96NL8 207 aa13.17□□□□□ -0.3
USF1-204ENST00000472217 POGKQ9P215 609 aa13.17□□□□□ -0.3
USF1-204ENST00000472217 TRAK1Q9UPV9 953 aa13.17□□□□□ -0.3
USF1-204ENST00000472217 ADAMTS2O95450 1211 aa13.16□□□□□ -0.3
USF1-204ENST00000472217 ARHGEF28Q8N1W1 1705 aaKnown RBP13.16□□□□□ -0.3
USF1-204ENST00000472217 KIAA1210Q9ULL0 1709 aa13.14□□□□□ -0.31
USF1-204ENST00000472217 ANKARQ7Z5J8 1434 aa13.13□□□□□ -0.31
USF1-204ENST00000472217 MARF1Q9Y4F3 1742 aaKnown RBP13.13□□□□□ -0.31
USF1-204ENST00000472217 HIRIP3Q9BW71 556 aaPredicted RBP13.13□□□□□ -0.31
USF1-204ENST00000472217 PHF8Q9UPP1 1060 aa13.13□□□□□ -0.31
USF1-204ENST00000472217 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
USF1-204ENST00000472217 CDK12Q9NYV4 1490 aaPredicted RBP13.12□□□□□ -0.31
USF1-204ENST00000472217 RXRBP28702 533 aa13.12□□□□□ -0.31
USF1-204ENST00000472217 NGLY1Q96IV0 654 aa13.12□□□□□ -0.31
USF1-204ENST00000472217 TULP4Q9NRJ4 1543 aa13.12□□□□□ -0.31
USF1-204ENST00000472217 SPATA31A3Q5VYP0 1347 aa13.12□□□□□ -0.31
USF1-204ENST00000472217 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
USF1-204ENST00000472217 QTRT2Q9H974 415 aaKnown RBP13.1□□□□□ -0.31
USF1-204ENST00000472217 TNS3Q68CZ2 1445 aa13.1□□□□□ -0.31
USF1-204ENST00000472217 PRR36Q9H6K5 1346 aa13.1□□□□□ -0.31
USF1-204ENST00000472217 EIF3AQ14152 1382 aaKnown RBP13.09□□□□□ -0.31
USF1-204ENST00000472217 RGS12O14924 1447 aa13.09□□□□□ -0.31
USF1-204ENST00000472217 ABCA3Q99758 1704 aa13.09□□□□□ -0.31
USF1-204ENST00000472217 TRPM3Q9HCF6 1732 aaPredicted RBP13.08□□□□□ -0.32
USF1-204ENST00000472217 WASLO00401 505 aaPredicted RBP13.08□□□□□ -0.32
USF1-204ENST00000472217 FNBP4Q8N3X1 1017 aaPredicted RBP13.08□□□□□ -0.32
USF1-204ENST00000472217 PMFBP1Q8TBY8 1022 aa13.08□□□□□ -0.32
USF1-204ENST00000472217 USP21Q9UK80 565 aa13.08□□□□□ -0.32
USF1-204ENST00000472217 ITSN1Q15811 1721 aa13.08□□□□□ -0.32
USF1-204ENST00000472217 SBNO1A3KN83 1393 aa13.07□□□□□ -0.32
USF1-204ENST00000472217 RBM6P78332 1123 aaKnown RBP13.07□□□□□ -0.32
USF1-204ENST00000472217 PSME1Q06323 249 aa13.07□□□□□ -0.32
USF1-204ENST00000472217 NBPF1Q3BBV0 1214 aa13.07□□□□□ -0.32
USF1-204ENST00000472217 ATP7BP35670 1465 aa13.07□□□□□ -0.32
USF1-204ENST00000472217 ATRNO75882 1429 aa13.06□□□□□ -0.32
USF1-204ENST00000472217 BCL9LQ86UU0 1499 aa13.06□□□□□ -0.32
USF1-204ENST00000472217 TOPAZ1Q8N9V7 1692 aa13.05□□□□□ -0.32
USF1-204ENST00000472217 ALS2Q96Q42 1657 aa13.05□□□□□ -0.32
USF1-204ENST00000472217 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.05□□□□□ -0.32
USF1-204ENST00000472217 L3MBTL2Q969R5 705 aa13.05□□□□□ -0.32
USF1-204ENST00000472217 SIN3AQ96ST3 1273 aa13.05□□□□□ -0.32
USF1-204ENST00000472217 TRPC5Q9UL62 973 aaPredicted RBP13.05□□□□□ -0.32
USF1-204ENST00000472217 ARHGEF10O15013 1369 aa13.05□□□□□ -0.32
USF1-204ENST00000472217 TRPM1Q7Z4N2 1603 aa13.04□□□□□ -0.32
USF1-204ENST00000472217 LMOD2Q6P5Q4 547 aa13.04□□□□□ -0.32
USF1-204ENST00000472217 CABLES1Q8TDN4 633 aa13.04□□□□□ -0.32
USF1-204ENST00000472217 GPRASP1Q5JY77 1395 aa13.04□□□□□ -0.32
USF1-204ENST00000472217 SLIT2O94813 1529 aa13.03□□□□□ -0.32
USF1-204ENST00000472217 PLCH1Q4KWH8 1693 aa13.03□□□□□ -0.32
USF1-204ENST00000472217 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
USF1-204ENST00000472217 UPF1Q92900 1129 aaKnown RBP eCLIP13.03□□□□□ -0.32
USF1-204ENST00000472217 QRICH2Q9H0J4 1663 aa13.02□□□□□ -0.32
USF1-204ENST00000472217 PLEKHG5O94827 1062 aa13.02□□□□□ -0.33
USF1-204ENST00000472217 NEUROD1Q13562 356 aa13.02□□□□□ -0.33
USF1-204ENST00000472217 NUDT16Q96DE0 195 aaKnown RBP13.02□□□□□ -0.33
USF1-204ENST00000472217 CRYBG1Q9Y4K1 1723 aa13.02□□□□□ -0.33
USF1-204ENST00000472217 NGDNQ8NEJ9 315 aaKnown RBP13.01□□□□□ -0.33
USF1-204ENST00000472217 CDK19Q9BWU1 502 aa13.01□□□□□ -0.33
USF1-204ENST00000472217 NWD2Q9ULI1 1742 aa13□□□□□ -0.33
USF1-204ENST00000472217 GLI3P10071 1580 aa13□□□□□ -0.33
USF1-204ENST00000472217 CENPJQ9HC77 1338 aaPredicted RBP13□□□□□ -0.33
USF1-204ENST00000472217 UNC5CLQ8IV45 518 aa12.99□□□□□ -0.33
USF1-204ENST00000472217 RALGAPBQ86X10 1494 aa12.98□□□□□ -0.33
USF1-204ENST00000472217 POLR3AO14802 1390 aaPredicted RBP12.98□□□□□ -0.33
USF1-204ENST00000472217 GJD4Q96KN9 370 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms