RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PRAG1Q86YV5 1406 aa13.08□□□□□ -0.32
HDAC3-205ENST00000469550 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
HDAC3-205ENST00000469550 MST1RQ04912 1400 aa13.08□□□□□ -0.32
HDAC3-205ENST00000469550 ADGRL3Q9HAR2 1447 aa13.07□□□□□ -0.32
HDAC3-205ENST00000469550 METP08581 1390 aa13.07□□□□□ -0.32
HDAC3-205ENST00000469550 LAMC1P11047 1609 aa13.06□□□□□ -0.32
HDAC3-205ENST00000469550 WASHC2AQ641Q2 1341 aa13.06□□□□□ -0.32
HDAC3-205ENST00000469550 BRINP3Q76B58 766 aa13.05□□□□□ -0.32
HDAC3-205ENST00000469550 PPLO60437 1756 aa13.05□□□□□ -0.32
HDAC3-205ENST00000469550 PTCH1Q13635 1447 aa13.05□□□□□ -0.32
HDAC3-205ENST00000469550 ZNF326Q5BKZ1 582 aaKnown RBP13.04□□□□□ -0.32
HDAC3-205ENST00000469550 HSPA5P11021 654 aaKnown RBP13.03□□□□□ -0.32
HDAC3-205ENST00000469550 ZBED9Q6R2W3 1325 aa13.03□□□□□ -0.32
HDAC3-205ENST00000469550 EIF4G2P78344 907 aaKnown RBP eCLIP13.02□□□□□ -0.32
HDAC3-205ENST00000469550 RPGRIP1LQ68CZ1 1315 aa13.01□□□□□ -0.33
HDAC3-205ENST00000469550 IRX6P78412 446 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-205ENST00000469550 ZNF772Q68DY9 489 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-205ENST00000469550 CDK12Q9NYV4 1490 aaPredicted RBP13□□□□□ -0.33
HDAC3-205ENST00000469550 VGFO15240 615 aaPredicted RBP13□□□□□ -0.33
HDAC3-205ENST00000469550 PRKRIP1Q9H875 184 aaPredicted RBP12.99□□□□□ -0.33
HDAC3-205ENST00000469550 C1orf167Q5SNV9 1468 aa12.99□□□□□ -0.33
HDAC3-205ENST00000469550 IFT172Q9UG01 1749 aa12.98□□□□□ -0.33
HDAC3-205ENST00000469550 MEX3CQ5U5Q3 659 aaKnown RBP12.98□□□□□ -0.33
HDAC3-205ENST00000469550 PNPLA6Q8IY17 1366 aa12.97□□□□□ -0.33
HDAC3-205ENST00000469550 CCDC7Q96M83 1385 aa12.97□□□□□ -0.33
HDAC3-205ENST00000469550 LRRC59Q96AG4 307 aaKnown RBP12.97□□□□□ -0.33
HDAC3-205ENST00000469550 ROBO2Q9HCK4 1378 aa12.97□□□□□ -0.33
HDAC3-205ENST00000469550 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
HDAC3-205ENST00000469550 KNDC1Q76NI1 1749 aa12.95□□□□□ -0.34
HDAC3-205ENST00000469550 COL22A1Q8NFW1 1626 aaPredicted RBP12.95□□□□□ -0.34
HDAC3-205ENST00000469550 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
HDAC3-205ENST00000469550 TECPR2O15040 1411 aa12.94□□□□□ -0.34
HDAC3-205ENST00000469550 DEKP35659 375 aaKnown RBP12.94□□□□□ -0.34
HDAC3-205ENST00000469550 CCDC184Q52MB2 194 aa12.94□□□□□ -0.34
HDAC3-205ENST00000469550 SPATA31E1Q6ZUB1 1445 aa12.94□□□□□ -0.34
HDAC3-205ENST00000469550 NOP58Q9Y2X3 529 aaKnown RBP12.94□□□□□ -0.34
HDAC3-205ENST00000469550 SOS2Q07890 1332 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-205ENST00000469550 SMG6Q86US8 1419 aaKnown RBP12.93□□□□□ -0.34
HDAC3-205ENST00000469550 B4GALNT3Q6L9W6 998 aa12.92□□□□□ -0.34
HDAC3-205ENST00000469550 MRS2Q9HD23 443 aa12.92□□□□□ -0.34
HDAC3-205ENST00000469550 AFF2P51816 1311 aa12.92□□□□□ -0.34
HDAC3-205ENST00000469550 RNF123Q5XPI4 1314 aa12.92□□□□□ -0.34
HDAC3-205ENST00000469550 CCDC144AA2RUR9 1427 aa12.92□□□□□ -0.34
HDAC3-205ENST00000469550 ANKRD30BQ9BXX2 1392 aa12.91□□□□□ -0.34
HDAC3-205ENST00000469550 NUTM2BA6NNL0 878 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-205ENST00000469550 NUTM2EB1AL46 878 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-205ENST00000469550 RXRBP28702 533 aa12.91□□□□□ -0.34
HDAC3-205ENST00000469550 NUTM2AQ8IVF1 878 aaPredicted RBP12.91□□□□□ -0.34
HDAC3-205ENST00000469550 C11orf95C9JLR9 678 aaPredicted RBP12.9□□□□□ -0.34
HDAC3-205ENST00000469550 DDX17Q92841 729 aaKnown RBP12.9□□□□□ -0.34
HDAC3-205ENST00000469550 UPF1Q92900 1129 aaKnown RBP eCLIP12.9□□□□□ -0.347e-7■■■■□ 25
HDAC3-205ENST00000469550 L3MBTL2Q969R5 705 aa12.9□□□□□ -0.34
HDAC3-205ENST00000469550 MPHOSPH9Q99550 1183 aa12.9□□□□□ -0.34
HDAC3-205ENST00000469550 PIK3C2GO75747 1445 aa12.89□□□□□ -0.35
HDAC3-205ENST00000469550 FAM9BQ8IZU0 186 aa12.89□□□□□ -0.35
HDAC3-205ENST00000469550 LRPPRCP42704 1394 aaKnown RBP12.89□□□□□ -0.35
HDAC3-205ENST00000469550 MARF1Q9Y4F3 1742 aaKnown RBP12.89□□□□□ -0.35
HDAC3-205ENST00000469550 FMN2Q9NZ56 1722 aa12.88□□□□□ -0.35
HDAC3-205ENST00000469550 RGS12O14924 1447 aa12.88□□□□□ -0.35
HDAC3-205ENST00000469550 PXDNQ92626 1479 aa12.88□□□□□ -0.35
HDAC3-205ENST00000469550 ABCC11Q96J66 1382 aa12.88□□□□□ -0.35
HDAC3-205ENST00000469550 MYOM2P54296 1465 aa12.87□□□□□ -0.35
HDAC3-205ENST00000469550 ORAI2Q96SN7 254 aa12.87□□□□□ -0.35
HDAC3-205ENST00000469550 ADGRF5Q8IZF2 1346 aa12.87□□□□□ -0.35
HDAC3-205ENST00000469550 KIF1AQ12756 1690 aa12.87□□□□□ -0.35
HDAC3-205ENST00000469550 NRXN1Q9ULB1 1477 aa12.86□□□□□ -0.35
HDAC3-205ENST00000469550 RBM6P78332 1123 aaKnown RBP12.86□□□□□ -0.35
HDAC3-205ENST00000469550 C8orf37Q96NL8 207 aa12.86□□□□□ -0.35
HDAC3-205ENST00000469550 FOXD1Q16676 465 aa12.85□□□□□ -0.35
HDAC3-205ENST00000469550 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
HDAC3-205ENST00000469550 KIF7Q2M1P5 1343 aa12.85□□□□□ -0.35
HDAC3-205ENST00000469550 NPHP3Q7Z494 1330 aa12.85□□□□□ -0.35
HDAC3-205ENST00000469550 IPO9Q96P70 1041 aaKnown RBP12.85□□□□□ -0.35
HDAC3-205ENST00000469550 SIRT1Q96EB6 747 aa12.84□□□□□ -0.35
HDAC3-205ENST00000469550 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.84□□□□□ -0.35
HDAC3-205ENST00000469550 QTRT2Q9H974 415 aaKnown RBP12.84□□□□□ -0.35
HDAC3-205ENST00000469550 YTHDC2Q9H6S0 1430 aaKnown RBP12.83□□□□□ -0.35
HDAC3-205ENST00000469550 ATRNO75882 1429 aa12.83□□□□□ -0.36
HDAC3-205ENST00000469550 ANP32AP39687 249 aaKnown RBP12.83□□□□□ -0.36
HDAC3-205ENST00000469550 FNBP4Q8N3X1 1017 aaPredicted RBP12.83□□□□□ -0.36
HDAC3-205ENST00000469550 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
HDAC3-205ENST00000469550 NBPF8Q3BBV2 869 aa12.82□□□□□ -0.36
HDAC3-205ENST00000469550 NGLY1Q96IV0 654 aa12.82□□□□□ -0.36
HDAC3-205ENST00000469550 PLEKHH1Q9ULM0 1364 aa12.81□□□□□ -0.36
HDAC3-205ENST00000469550 ADAMTS2O95450 1211 aa12.81□□□□□ -0.36
HDAC3-205ENST00000469550 CCDC136Q96JN2 1154 aa12.81□□□□□ -0.36
HDAC3-205ENST00000469550 DLC1Q96QB1 1528 aa12.81□□□□□ -0.36
HDAC3-205ENST00000469550 RGL3Q3MIN7 710 aa12.8□□□□□ -0.36
HDAC3-205ENST00000469550 ESCO1Q5FWF5 840 aa12.8□□□□□ -0.36
HDAC3-205ENST00000469550 TRPC5Q9UL62 973 aaPredicted RBP12.8□□□□□ -0.36
HDAC3-205ENST00000469550 C14orf93Q9H972 538 aaKnown RBP12.8□□□□□ -0.36
HDAC3-205ENST00000469550 USP21Q9UK80 565 aa12.8□□□□□ -0.36
HDAC3-205ENST00000469550 ADGRB2O60241 1585 aa12.79□□□□□ -0.36
HDAC3-205ENST00000469550 BCL9LQ86UU0 1499 aa12.79□□□□□ -0.36
HDAC3-205ENST00000469550 WAPLQ7Z5K2 1190 aa12.79□□□□□ -0.36
HDAC3-205ENST00000469550 ATAD2Q6PL18 1390 aa12.79□□□□□ -0.36
HDAC3-205ENST00000469550 RGPD8O14715 1765 aaPredicted RBP12.78□□□□□ -0.36
HDAC3-205ENST00000469550 STK26Q9P289 416 aa12.78□□□□□ -0.36
HDAC3-205ENST00000469550 ZBTB47Q9UFB7 747 aaPredicted RBP12.78□□□□□ -0.36
HDAC3-205ENST00000469550 USP32Q8NFA0 1604 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms