RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 CDC42BPGQ6DT37 1551 aa31.94■■■□□ 2.7
LIME1-203ENST00000465591 ORAI2Q96SN7 254 aa31.92■■■□□ 2.7
LIME1-203ENST00000465591 LRP6O75581 1613 aa31.92■■■□□ 2.7
LIME1-203ENST00000465591 DHX57Q6P158 1386 aaKnown RBP31.92■■■□□ 2.7
LIME1-203ENST00000465591 KDM2AQ9Y2K7 1162 aa31.91■■■□□ 2.7
LIME1-203ENST00000465591 DCAF11Q8TEB1 546 aa31.9■■■□□ 2.7
LIME1-203ENST00000465591 ADGRB1O14514 1584 aa31.88■■■□□ 2.69
LIME1-203ENST00000465591 SPATA31A6Q5VVP1 1343 aa31.85■■■□□ 2.69
LIME1-203ENST00000465591 SIRT1Q96EB6 747 aa31.83■■■□□ 2.69
LIME1-203ENST00000465591 FMN2Q9NZ56 1722 aa31.83■■■□□ 2.69
LIME1-203ENST00000465591 NUTM2FA1L443 756 aa31.8■■■□□ 2.68
LIME1-203ENST00000465591 POTEAQ6S8J7 498 aa31.8■■■□□ 2.68
LIME1-203ENST00000465591 DLC1Q96QB1 1528 aa31.8■■■□□ 2.68
LIME1-203ENST00000465591 LRRC59Q96AG4 307 aaKnown RBP31.79■■■□□ 2.68
LIME1-203ENST00000465591 PRAM1Q96QH2 718 aa31.78■■■□□ 2.68
LIME1-203ENST00000465591 PNPLA6Q8IY17 1366 aa31.78■■■□□ 2.68
LIME1-203ENST00000465591 SOS2Q07890 1332 aaPredicted RBP31.77■■■□□ 2.68
LIME1-203ENST00000465591 ESCO1Q5FWF5 840 aa31.77■■■□□ 2.68
LIME1-203ENST00000465591 SAFB2Q14151 953 aaKnown RBP eCLIP31.76■■■□□ 2.67
LIME1-203ENST00000465591 STAC3Q96MF2 364 aa31.76■■■□□ 2.67
LIME1-203ENST00000465591 NUTM2BA6NNL0 878 aaPredicted RBP31.75■■■□□ 2.67
LIME1-203ENST00000465591 NUTM2EB1AL46 878 aaPredicted RBP31.75■■■□□ 2.67
LIME1-203ENST00000465591 NUTM2AQ8IVF1 878 aaPredicted RBP31.75■■■□□ 2.67
LIME1-203ENST00000465591 RGPD8O14715 1765 aaPredicted RBP31.75■■■□□ 2.67
LIME1-203ENST00000465591 TRAK1Q9UPV9 953 aa31.73■■■□□ 2.67
LIME1-203ENST00000465591 MEX3CQ5U5Q3 659 aaKnown RBP31.71■■■□□ 2.67
LIME1-203ENST00000465591 PXDNQ92626 1479 aa31.71■■■□□ 2.67
LIME1-203ENST00000465591 POGKQ9P215 609 aa31.69■■■□□ 2.66
LIME1-203ENST00000465591 FOXO3O43524 673 aa31.68■■■□□ 2.66
LIME1-203ENST00000465591 XPCQ01831 940 aaPredicted RBP31.67■■■□□ 2.66
LIME1-203ENST00000465591 NPHP3Q7Z494 1330 aa31.67■■■□□ 2.66
LIME1-203ENST00000465591 ADGRB2O60241 1585 aa31.66■■■□□ 2.66
LIME1-203ENST00000465591 ARHGEF28Q8N1W1 1705 aaKnown RBP31.66■■■□□ 2.66
LIME1-203ENST00000465591 USP32Q8NFA0 1604 aa31.64■■■□□ 2.66
LIME1-203ENST00000465591 KIF1AQ12756 1690 aa31.64■■■□□ 2.66
LIME1-203ENST00000465591 KIAA1210Q9ULL0 1709 aa31.63■■■□□ 2.65
LIME1-203ENST00000465591 SIN3AQ96ST3 1273 aa31.63■■■□□ 2.65
LIME1-203ENST00000465591 COL22A1Q8NFW1 1626 aaPredicted RBP31.62■■■□□ 2.65
LIME1-203ENST00000465591 HIRIP3Q9BW71 556 aaPredicted RBP31.61■■■□□ 2.65
LIME1-203ENST00000465591 MINK1Q8N4C8 1332 aaPredicted RBP31.6■■■□□ 2.65
LIME1-203ENST00000465591 NBPF1Q3BBV0 1214 aa31.57■■■□□ 2.64
LIME1-203ENST00000465591 AFF2P51816 1311 aa31.56■■■□□ 2.64
LIME1-203ENST00000465591 ZNF772Q68DY9 489 aaPredicted RBP31.56■■■□□ 2.64
LIME1-203ENST00000465591 L3MBTL2Q969R5 705 aa31.56■■■□□ 2.64
LIME1-203ENST00000465591 PHF8Q9UPP1 1060 aa31.56■■■□□ 2.64
LIME1-203ENST00000465591 ADAMTS2O95450 1211 aa31.55■■■□□ 2.64
LIME1-203ENST00000465591 ANKARQ7Z5J8 1434 aa31.55■■■□□ 2.64
LIME1-203ENST00000465591 C8orf37Q96NL8 207 aa31.54■■■□□ 2.64
LIME1-203ENST00000465591 PRR36Q9H6K5 1346 aa31.52■■■□□ 2.64
LIME1-203ENST00000465591 NEUROD1Q13562 356 aa31.51■■■□□ 2.63
LIME1-203ENST00000465591 KRT28Q7Z3Y7 464 aa31.51■■■□□ 2.63
LIME1-203ENST00000465591 TULP4Q9NRJ4 1543 aa31.5■■■□□ 2.63
LIME1-203ENST00000465591 WASLO00401 505 aaPredicted RBP31.5■■■□□ 2.63
LIME1-203ENST00000465591 SPATA31A3Q5VYP0 1347 aa31.49■■■□□ 2.63
LIME1-203ENST00000465591 PMFBP1Q8TBY8 1022 aa31.49■■■□□ 2.63
LIME1-203ENST00000465591 TRIM26Q12899 539 aaPredicted RBP31.48■■■□□ 2.63
LIME1-203ENST00000465591 MARF1Q9Y4F3 1742 aaKnown RBP31.46■■■□□ 2.63
LIME1-203ENST00000465591 NGLY1Q96IV0 654 aa31.45■■■□□ 2.63
LIME1-203ENST00000465591 TNS3Q68CZ2 1445 aa31.43■■■□□ 2.62
LIME1-203ENST00000465591 EIF3AQ14152 1382 aaKnown RBP31.43■■■□□ 2.62
LIME1-203ENST00000465591 TRPM1Q7Z4N2 1603 aa31.42■■■□□ 2.62
LIME1-203ENST00000465591 ATP7BP35670 1465 aa31.41■■■□□ 2.62
LIME1-203ENST00000465591 TRPM3Q9HCF6 1732 aaPredicted RBP31.41■■■□□ 2.62
LIME1-203ENST00000465591 PSME1Q06323 249 aa31.4■■■□□ 2.62
LIME1-203ENST00000465591 RXRBP28702 533 aa31.39■■■□□ 2.62
LIME1-203ENST00000465591 SBNO1A3KN83 1393 aa31.39■■■□□ 2.62
LIME1-203ENST00000465591 QTRT2Q9H974 415 aaKnown RBP31.38■■■□□ 2.61
LIME1-203ENST00000465591 ITSN1Q15811 1721 aa31.38■■■□□ 2.61
LIME1-203ENST00000465591 FNBP4Q8N3X1 1017 aaPredicted RBP31.37■■■□□ 2.61
LIME1-203ENST00000465591 CDK19Q9BWU1 502 aa31.37■■■□□ 2.61
LIME1-203ENST00000465591 NUDT16Q96DE0 195 aaKnown RBP31.36■■■□□ 2.61
LIME1-203ENST00000465591 ABCA3Q99758 1704 aa31.35■■■□□ 2.61
LIME1-203ENST00000465591 CABLES1Q8TDN4 633 aa31.34■■■□□ 2.61
LIME1-203ENST00000465591 USP21Q9UK80 565 aa31.34■■■□□ 2.61
LIME1-203ENST00000465591 TOPAZ1Q8N9V7 1692 aa31.34■■■□□ 2.61
LIME1-203ENST00000465591 QRICH2Q9H0J4 1663 aa31.34■■■□□ 2.61
LIME1-203ENST00000465591 ALS2Q96Q42 1657 aa31.33■■■□□ 2.61
LIME1-203ENST00000465591 CDK12Q9NYV4 1490 aaPredicted RBP31.33■■■□□ 2.61
LIME1-203ENST00000465591 CENPJQ9HC77 1338 aaPredicted RBP31.32■■■□□ 2.6
LIME1-203ENST00000465591 PLEKHG5O94827 1062 aa31.32■■■□□ 2.6
LIME1-203ENST00000465591 NBPF8Q3BBV2 869 aa31.32■■■□□ 2.6
LIME1-203ENST00000465591 LMOD2Q6P5Q4 547 aa31.31■■■□□ 2.6
LIME1-203ENST00000465591 BCL9LQ86UU0 1499 aa31.3■■■□□ 2.6
LIME1-203ENST00000465591 RBM6P78332 1123 aaKnown RBP31.3■■■□□ 2.6
LIME1-203ENST00000465591 ARHGEF10O15013 1369 aa31.3■■■□□ 2.6
LIME1-203ENST00000465591 GPRASP1Q5JY77 1395 aa31.3■■■□□ 2.6
LIME1-203ENST00000465591 NGDNQ8NEJ9 315 aaKnown RBP31.29■■■□□ 2.6
LIME1-203ENST00000465591 RGS12O14924 1447 aa31.29■■■□□ 2.6
LIME1-203ENST00000465591 ATRNO75882 1429 aa31.28■■■□□ 2.6
LIME1-203ENST00000465591 ROCK2O75116 1388 aaKnown RBP31.26■■■□□ 2.59
LIME1-203ENST00000465591 TRPC5Q9UL62 973 aaPredicted RBP31.25■■■□□ 2.59
LIME1-203ENST00000465591 SLIT2O94813 1529 aa31.24■■■□□ 2.59
LIME1-203ENST00000465591 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.24■■■□□ 2.59
LIME1-203ENST00000465591 CCDC61Q9Y6R9 512 aa31.23■■■□□ 2.59
LIME1-203ENST00000465591 CRYBG1Q9Y4K1 1723 aa31.23■■■□□ 2.59
LIME1-203ENST00000465591 POLR3AO14802 1390 aaPredicted RBP31.21■■■□□ 2.59
LIME1-203ENST00000465591 HAP1P54257 671 aaPredicted RBP31.21■■■□□ 2.59
LIME1-203ENST00000465591 CABP2Q9NPB3 220 aa31.21■■■□□ 2.59
LIME1-203ENST00000465591 PLCH1Q4KWH8 1693 aa31.2■■■□□ 2.59
LIME1-203ENST00000465591 ACEP12821 1306 aa31.2■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms