RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 KIF1AQ12756 1690 aa14.9□□□□□ -0.02
SF3A3-204ENST00000462258 SOCS7O14512 581 aa14.89□□□□□ -0.03
SF3A3-204ENST00000462258 CFAP70Q5T0N1 1121 aa14.89□□□□□ -0.03
SF3A3-204ENST00000462258 ADGRB2O60241 1585 aa14.89□□□□□ -0.03
SF3A3-204ENST00000462258 SPATA31A6Q5VVP1 1343 aa14.89□□□□□ -0.03
SF3A3-204ENST00000462258 DHX57Q6P158 1386 aaKnown RBP14.88□□□□□ -0.03
SF3A3-204ENST00000462258 ARHGEF28Q8N1W1 1705 aaKnown RBP14.88□□□□□ -0.03
SF3A3-204ENST00000462258 KIAA1210Q9ULL0 1709 aa14.87□□□□□ -0.03
SF3A3-204ENST00000462258 WAPLQ7Z5K2 1190 aa14.87□□□□□ -0.03
SF3A3-204ENST00000462258 RGPD8O14715 1765 aaPredicted RBP14.86□□□□□ -0.03
SF3A3-204ENST00000462258 DCAF11Q8TEB1 546 aa14.86□□□□□ -0.03
SF3A3-204ENST00000462258 DDX17Q92841 729 aaKnown RBP14.86□□□□□ -0.03
SF3A3-204ENST00000462258 COL22A1Q8NFW1 1626 aaPredicted RBP14.85□□□□□ -0.03
SF3A3-204ENST00000462258 ORAI2Q96SN7 254 aa14.85□□□□□ -0.03
SF3A3-204ENST00000462258 RGS17Q9UGC6 210 aaPredicted RBP14.85□□□□□ -0.03
SF3A3-204ENST00000462258 PNPLA6Q8IY17 1366 aa14.85□□□□□ -0.03
SF3A3-204ENST00000462258 PXDNQ92626 1479 aa14.84□□□□□ -0.03
SF3A3-204ENST00000462258 KDM2AQ9Y2K7 1162 aa14.84□□□□□ -0.03
SF3A3-204ENST00000462258 SIRT1Q96EB6 747 aa14.83□□□□□ -0.04
SF3A3-204ENST00000462258 STAC3Q96MF2 364 aa14.83□□□□□ -0.04
SF3A3-204ENST00000462258 USP32Q8NFA0 1604 aa14.83□□□□□ -0.04
SF3A3-204ENST00000462258 MEX3CQ5U5Q3 659 aaKnown RBP14.82□□□□□ -0.04
SF3A3-204ENST00000462258 LRRC59Q96AG4 307 aaKnown RBP14.82□□□□□ -0.04
SF3A3-204ENST00000462258 SOS2Q07890 1332 aaPredicted RBP14.82□□□□□ -0.04
SF3A3-204ENST00000462258 ESCO1Q5FWF5 840 aa14.81□□□□□ -0.04
SF3A3-204ENST00000462258 PRAM1Q96QH2 718 aa14.81□□□□□ -0.04
SF3A3-204ENST00000462258 NPHP3Q7Z494 1330 aa14.81□□□□□ -0.04
SF3A3-204ENST00000462258 NUTM2FA1L443 756 aa14.8□□□□□ -0.04
SF3A3-204ENST00000462258 MARF1Q9Y4F3 1742 aaKnown RBP14.8□□□□□ -0.04
SF3A3-204ENST00000462258 NUTM2BA6NNL0 878 aaPredicted RBP14.79□□□□□ -0.04
SF3A3-204ENST00000462258 NUTM2EB1AL46 878 aaPredicted RBP14.79□□□□□ -0.04
SF3A3-204ENST00000462258 SAFB2Q14151 953 aaKnown RBP eCLIP14.79□□□□□ -0.04
SF3A3-204ENST00000462258 ITSN1Q15811 1721 aa14.79□□□□□ -0.04
SF3A3-204ENST00000462258 NUTM2AQ8IVF1 878 aaPredicted RBP14.79□□□□□ -0.04
SF3A3-204ENST00000462258 TULP4Q9NRJ4 1543 aa14.78□□□□□ -0.04
SF3A3-204ENST00000462258 ANKARQ7Z5J8 1434 aa14.78□□□□□ -0.04
SF3A3-204ENST00000462258 POTEAQ6S8J7 498 aa14.78□□□□□ -0.04
SF3A3-204ENST00000462258 POGKQ9P215 609 aa14.78□□□□□ -0.04
SF3A3-204ENST00000462258 TRAK1Q9UPV9 953 aa14.78□□□□□ -0.04
SF3A3-204ENST00000462258 ABCA3Q99758 1704 aa14.76□□□□□ -0.05
SF3A3-204ENST00000462258 TRPM1Q7Z4N2 1603 aa14.76□□□□□ -0.05
SF3A3-204ENST00000462258 EIF3AQ14152 1382 aaKnown RBP14.75□□□□□ -0.05
SF3A3-204ENST00000462258 TOPAZ1Q8N9V7 1692 aa14.74□□□□□ -0.05
SF3A3-204ENST00000462258 FOXO3O43524 673 aa14.74□□□□□ -0.05
SF3A3-204ENST00000462258 XPCQ01831 940 aaPredicted RBP14.74□□□□□ -0.05
SF3A3-204ENST00000462258 ZNF772Q68DY9 489 aaPredicted RBP14.74□□□□□ -0.05
SF3A3-204ENST00000462258 TRPM3Q9HCF6 1732 aaPredicted RBP14.74□□□□□ -0.05
SF3A3-204ENST00000462258 QRICH2Q9H0J4 1663 aa14.74□□□□□ -0.05
SF3A3-204ENST00000462258 MINK1Q8N4C8 1332 aaPredicted RBP14.73□□□□□ -0.05
SF3A3-204ENST00000462258 HIRIP3Q9BW71 556 aaPredicted RBP14.73□□□□□ -0.05
SF3A3-204ENST00000462258 TNS3Q68CZ2 1445 aa14.73□□□□□ -0.05
SF3A3-204ENST00000462258 AFF2P51816 1311 aa14.72□□□□□ -0.05
SF3A3-204ENST00000462258 ATP7BP35670 1465 aa14.72□□□□□ -0.05
SF3A3-204ENST00000462258 PHF8Q9UPP1 1060 aa14.72□□□□□ -0.05
SF3A3-204ENST00000462258 C8orf37Q96NL8 207 aa14.71□□□□□ -0.05
SF3A3-204ENST00000462258 ADAMTS2O95450 1211 aa14.7□□□□□ -0.06
SF3A3-204ENST00000462258 ALS2Q96Q42 1657 aa14.7□□□□□ -0.06
SF3A3-204ENST00000462258 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.69□□□□□ -0.06
SF3A3-204ENST00000462258 SIN3AQ96ST3 1273 aa14.69□□□□□ -0.06
SF3A3-204ENST00000462258 SPATA31A3Q5VYP0 1347 aa14.68□□□□□ -0.06
SF3A3-204ENST00000462258 PRR36Q9H6K5 1346 aa14.68□□□□□ -0.06
SF3A3-204ENST00000462258 WASLO00401 505 aaPredicted RBP14.68□□□□□ -0.06
SF3A3-204ENST00000462258 L3MBTL2Q969R5 705 aa14.68□□□□□ -0.06
SF3A3-204ENST00000462258 CDK12Q9NYV4 1490 aaPredicted RBP14.68□□□□□ -0.06
SF3A3-204ENST00000462258 PLCH1Q4KWH8 1693 aa14.68□□□□□ -0.06
SF3A3-204ENST00000462258 CRYBG1Q9Y4K1 1723 aa14.67□□□□□ -0.06
SF3A3-204ENST00000462258 TRIM26Q12899 539 aaPredicted RBP14.67□□□□□ -0.06
SF3A3-204ENST00000462258 NBPF1Q3BBV0 1214 aa14.67□□□□□ -0.06
SF3A3-204ENST00000462258 KRT28Q7Z3Y7 464 aa14.67□□□□□ -0.06
SF3A3-204ENST00000462258 SBNO1A3KN83 1393 aa14.67□□□□□ -0.06
SF3A3-204ENST00000462258 NEUROD1Q13562 356 aa14.66□□□□□ -0.06
SF3A3-204ENST00000462258 PMFBP1Q8TBY8 1022 aa14.66□□□□□ -0.06
SF3A3-204ENST00000462258 ARHGEF10O15013 1369 aa14.65□□□□□ -0.06
SF3A3-204ENST00000462258 PSME1Q06323 249 aa14.65□□□□□ -0.06
SF3A3-204ENST00000462258 NGLY1Q96IV0 654 aa14.65□□□□□ -0.06
SF3A3-204ENST00000462258 RGS12O14924 1447 aa14.65□□□□□ -0.06
SF3A3-204ENST00000462258 NWD2Q9ULI1 1742 aa14.64□□□□□ -0.07
SF3A3-204ENST00000462258 RXRBP28702 533 aa14.64□□□□□ -0.07
SF3A3-204ENST00000462258 CENPJQ9HC77 1338 aaPredicted RBP14.64□□□□□ -0.07
SF3A3-204ENST00000462258 GPRASP1Q5JY77 1395 aa14.63□□□□□ -0.07
SF3A3-204ENST00000462258 PHRF1Q9P1Y6 1649 aaKnown RBP14.63□□□□□ -0.07
SF3A3-204ENST00000462258 ROCK2O75116 1388 aaKnown RBP14.62□□□□□ -0.07
SF3A3-204ENST00000462258 ATRNO75882 1429 aa14.62□□□□□ -0.07
SF3A3-204ENST00000462258 TONSLQ96HA7 1378 aa14.61□□□□□ -0.07
SF3A3-204ENST00000462258 FNBP4Q8N3X1 1017 aaPredicted RBP14.61□□□□□ -0.07
SF3A3-204ENST00000462258 USP21Q9UK80 565 aa14.61□□□□□ -0.07
SF3A3-204ENST00000462258 BCL9LQ86UU0 1499 aa14.61□□□□□ -0.07
SF3A3-204ENST00000462258 SLIT2O94813 1529 aa14.61□□□□□ -0.07
SF3A3-204ENST00000462258 NRAPQ86VF7 1730 aa14.61□□□□□ -0.07
SF3A3-204ENST00000462258 HAP1P54257 671 aaPredicted RBP14.6□□□□□ -0.07
SF3A3-204ENST00000462258 RBM6P78332 1123 aaKnown RBP14.6□□□□□ -0.07
SF3A3-204ENST00000462258 LMOD2Q6P5Q4 547 aa14.6□□□□□ -0.07
SF3A3-204ENST00000462258 NUDT16Q96DE0 195 aaKnown RBP14.6□□□□□ -0.07
SF3A3-204ENST00000462258 CDK19Q9BWU1 502 aa14.6□□□□□ -0.07
SF3A3-204ENST00000462258 QTRT2Q9H974 415 aaKnown RBP14.6□□□□□ -0.07
SF3A3-204ENST00000462258 RALGAPBQ86X10 1494 aa14.6□□□□□ -0.07
SF3A3-204ENST00000462258 NGDNQ8NEJ9 315 aaKnown RBP14.59□□□□□ -0.07
SF3A3-204ENST00000462258 TRPC5Q9UL62 973 aaPredicted RBP14.59□□□□□ -0.07
SF3A3-204ENST00000462258 COL14A1Q05707 1796 aaKnown RBP14.59□□□□□ -0.07
SF3A3-204ENST00000462258 POLR3AO14802 1390 aaPredicted RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms