RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 KIF15Q9NS87 1388 aa16.05■□□□□ 0.16
USP40-208ENST00000450966 TPM1P09493 284 aa16.04■□□□□ 0.16
USP40-208ENST00000450966 HSP90B1P14625 803 aaKnown RBP16.04■□□□□ 0.16
USP40-208ENST00000450966 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
USP40-208ENST00000450966 EIF3JO75822 258 aaKnown RBP16.04■□□□□ 0.16
USP40-208ENST00000450966 CRBNQ96SW2 442 aa16.04■□□□□ 0.16
USP40-208ENST00000450966 WASHC2AQ641Q2 1341 aa16.04■□□□□ 0.16
USP40-208ENST00000450966 TSPY26PQ9H489 355 aa16.04■□□□□ 0.16
USP40-208ENST00000450966 G3V3G9 751 aa16.03■□□□□ 0.16
USP40-208ENST00000450966 C1orf141Q5JVX7 400 aa16.03■□□□□ 0.16
USP40-208ENST00000450966 DCAF8Q5TAQ9 597 aa16.03■□□□□ 0.16
USP40-208ENST00000450966 CGNL1Q0VF96 1302 aa16.03■□□□□ 0.16
USP40-208ENST00000450966 APBB1O00213 710 aa16.03■□□□□ 0.16
USP40-208ENST00000450966 POLA1P09884 1462 aaPredicted RBP16.02■□□□□ 0.16
USP40-208ENST00000450966 MAGI1Q96QZ7 1491 aaPredicted RBP16.02■□□□□ 0.16
USP40-208ENST00000450966 PSME1Q06323 249 aa16.02■□□□□ 0.16
USP40-208ENST00000450966 FOXD4L5Q5VV16 416 aaPredicted RBP16.02■□□□□ 0.16
USP40-208ENST00000450966 FOXD4L4Q8WXT5 416 aaPredicted RBP16.02■□□□□ 0.16
USP40-208ENST00000450966 MCM5P33992 734 aa16.02■□□□□ 0.16
USP40-208ENST00000450966 ITPRIPQ8IWB1 547 aa16.02■□□□□ 0.15
USP40-208ENST00000450966 GPATCH3Q96I76 525 aa16.02■□□□□ 0.15
USP40-208ENST00000450966 INCENPQ9NQS7 918 aa16.01■□□□□ 0.15
USP40-208ENST00000450966 KIAA0586Q9BVV6 1533 aa16.01■□□□□ 0.15
USP40-208ENST00000450966 MIA2Q96PC5 1412 aa16.01■□□□□ 0.15
USP40-208ENST00000450966 TRAK1Q9UPV9 953 aa16.01■□□□□ 0.15
USP40-208ENST00000450966 DHX8Q14562 1220 aaKnown RBP16■□□□□ 0.15
USP40-208ENST00000450966 TSR1Q2NL82 804 aaKnown RBP16■□□□□ 0.15
USP40-208ENST00000450966 PPP4R3BQ5MIZ7 849 aa16■□□□□ 0.15
USP40-208ENST00000450966 TDO2P48775 406 aa16■□□□□ 0.15
USP40-208ENST00000450966 DDX11Q96FC9 970 aa16■□□□□ 0.15
USP40-208ENST00000450966 PLCD4Q9BRC7 762 aa16■□□□□ 0.15
USP40-208ENST00000450966 RBM28Q9NW13 759 aaKnown RBP16■□□□□ 0.15
USP40-208ENST00000450966 MCM4P33991 863 aa16■□□□□ 0.15
USP40-208ENST00000450966 NCBP3Q53F19 620 aaKnown RBP15.99■□□□□ 0.15
USP40-208ENST00000450966 C22orf23Q9BZE7 217 aa15.99■□□□□ 0.15
USP40-208ENST00000450966 GTF2E1P29083 439 aaPredicted RBP15.99■□□□□ 0.15
USP40-208ENST00000450966 CCDC94Q9BW85 323 aaPredicted RBP15.99■□□□□ 0.15
USP40-208ENST00000450966 RRBP1Q9P2E9 1410 aaKnown RBP15.99■□□□□ 0.15
USP40-208ENST00000450966 IPO4Q8TEX9 1081 aaKnown RBP15.98■□□□□ 0.15
USP40-208ENST00000450966 SYNJ1O43426 1573 aa15.98■□□□□ 0.15
USP40-208ENST00000450966 CENPJQ9HC77 1338 aaPredicted RBP15.98■□□□□ 0.15
USP40-208ENST00000450966 GOLGA6L7A0A1B0GV03 622 aa15.98■□□□□ 0.15
USP40-208ENST00000450966 RNF214Q8ND24 703 aa15.98■□□□□ 0.15
USP40-208ENST00000450966 CHMP3Q9Y3E7 222 aa15.98■□□□□ 0.15
USP40-208ENST00000450966 TOP2BQ02880 1626 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 HECW1Q76N89 1606 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 PAIP2Q9BPZ3 127 aaKnown RBP15.97■□□□□ 0.15
USP40-208ENST00000450966 ERLIN1O75477 346 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 L3MBTL2Q969R5 705 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 PRIMPOLQ96LW4 560 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 GPRASP1Q5JY77 1395 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 FGD6Q6ZV73 1430 aa15.97■□□□□ 0.15
USP40-208ENST00000450966 ZRSR2Q15696 482 aaKnown RBP15.96■□□□□ 0.15
USP40-208ENST00000450966 NUTM2DQ5VT03 806 aaPredicted RBP15.96■□□□□ 0.15
USP40-208ENST00000450966 WWC1Q8IX03 1113 aa15.96■□□□□ 0.15
USP40-208ENST00000450966 TNNT1P13805 278 aa15.96■□□□□ 0.15
USP40-208ENST00000450966 NGEFQ8N5V2 710 aa15.96■□□□□ 0.15
USP40-208ENST00000450966 NLRP13Q86W25 1043 aa15.96■□□□□ 0.14
USP40-208ENST00000450966 SLC52A1Q9NWF4 448 aa15.96■□□□□ 0.14
USP40-208ENST00000450966 CT47A1Q5JQC4 288 aaPredicted RBP15.94■□□□□ 0.14
USP40-208ENST00000450966 EHBP1L1Q8N3D4 1523 aa15.94■□□□□ 0.14
USP40-208ENST00000450966 ANKRD50Q9ULJ7 1429 aa15.94■□□□□ 0.14
USP40-208ENST00000450966 AAMPQ13685 434 aa15.94■□□□□ 0.14
USP40-208ENST00000450966 TROQ12816 1431 aaPredicted RBP15.94■□□□□ 0.14
USP40-208ENST00000450966 TRERF1Q96PN7 1200 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 ANKLE2Q86XL3 938 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 IPO7O95373 1038 aaKnown RBP15.93■□□□□ 0.14
USP40-208ENST00000450966 TTLL5Q6EMB2 1281 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 TTC5Q8N0Z6 440 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 CIZ1Q9ULV3 898 aaPredicted RBP15.93■□□□□ 0.14
USP40-208ENST00000450966 TXLNBQ8N3L3 684 aa15.93■□□□□ 0.14
USP40-208ENST00000450966 PRKRIP1Q9H875 184 aaPredicted RBP15.92■□□□□ 0.14
USP40-208ENST00000450966 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.92■□□□□ 0.142e-6■■■□□ 17.2
USP40-208ENST00000450966 SMC4Q9NTJ3 1288 aa15.92■□□□□ 0.14
USP40-208ENST00000450966 TMCO3Q6UWJ1 677 aa15.92■□□□□ 0.14
USP40-208ENST00000450966 SF3A1Q15459 793 aaKnown RBP15.92■□□□□ 0.14
USP40-208ENST00000450966 CCDC91Q7Z6B0 441 aa15.92■□□□□ 0.14
USP40-208ENST00000450966 NOL10Q9BSC4 688 aaKnown RBP15.92■□□□□ 0.14
USP40-208ENST00000450966 NOL8Q76FK4 1167 aaKnown RBP15.91■□□□□ 0.14
USP40-208ENST00000450966 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 HFM1A2PYH4 1435 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 TEFQ10587 303 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 TXNDC2Q86VQ3 553 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 FAM184AQ8NB25 1140 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 CHMP4CQ96CF2 233 aa15.91■□□□□ 0.14
USP40-208ENST00000450966 PROSER2Q86WR7 435 aaPredicted RBP15.91■□□□□ 0.14
USP40-208ENST00000450966 CT47B1P0C2W7 299 aaPredicted RBP15.9■□□□□ 0.14
USP40-208ENST00000450966 TRIM5Q9C035 493 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 KIF2AO00139 706 aaPredicted RBP15.9■□□□□ 0.14
USP40-208ENST00000450966 REC8O95072 547 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 GTF2F1P35269 517 aaKnown RBP eCLIP15.9■□□□□ 0.14
USP40-208ENST00000450966 FAM193AP78312 1265 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 DNAAF4Q8WXU2 420 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 NCOA2Q15596 1464 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 CUL7Q14999 1698 aa15.9■□□□□ 0.14
USP40-208ENST00000450966 PLIN1O60240 522 aa15.89■□□□□ 0.13
USP40-208ENST00000450966 PPP6R1Q9UPN7 881 aa15.89■□□□□ 0.13
USP40-208ENST00000450966 RUSC2Q8N2Y8 1516 aa15.89■□□□□ 0.13
USP40-208ENST00000450966 RPGRIP1LQ68CZ1 1315 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms