RNA–Protein interactions for RNA: ENST00000448530.5

VCP-203, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 950 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-203ENST00000448530 CDC42BPGQ6DT37 1551 aa28.87■■■□□ 2.21
VCP-203ENST00000448530 NRXN1Q9ULB1 1477 aa28.86■■■□□ 2.21
VCP-203ENST00000448530 LRP6O75581 1613 aa28.86■■■□□ 2.21
VCP-203ENST00000448530 NUTM2BA6NNL0 878 aaPredicted RBP28.85■■■□□ 2.21
VCP-203ENST00000448530 NUTM2EB1AL46 878 aaPredicted RBP28.85■■■□□ 2.21
VCP-203ENST00000448530 NUTM2AQ8IVF1 878 aaPredicted RBP28.85■■■□□ 2.21
VCP-203ENST00000448530 ORAI2Q96SN7 254 aa28.85■■■□□ 2.21
VCP-203ENST00000448530 DHX57Q6P158 1386 aaKnown RBP28.85■■■□□ 2.21
VCP-203ENST00000448530 CFAP70Q5T0N1 1121 aa28.84■■■□□ 2.21
VCP-203ENST00000448530 POTEAQ6S8J7 498 aa28.84■■■□□ 2.21
VCP-203ENST00000448530 ESCO1Q5FWF5 840 aa28.8■■■□□ 2.2
VCP-203ENST00000448530 PLEKHH1Q9ULM0 1364 aa28.79■■■□□ 2.2
VCP-203ENST00000448530 SIRT1Q96EB6 747 aa28.79■■■□□ 2.2
VCP-203ENST00000448530 KDM2AQ9Y2K7 1162 aa28.79■■■□□ 2.2
VCP-203ENST00000448530 DCAF11Q8TEB1 546 aa28.78■■■□□ 2.2
VCP-203ENST00000448530 ZNF772Q68DY9 489 aaPredicted RBP28.77■■■□□ 2.2
VCP-203ENST00000448530 PNPLA6Q8IY17 1366 aa28.76■■■□□ 2.2
VCP-203ENST00000448530 STAC3Q96MF2 364 aa28.76■■■□□ 2.19
VCP-203ENST00000448530 SOS2Q07890 1332 aaPredicted RBP28.75■■■□□ 2.19
VCP-203ENST00000448530 NUTM2FA1L443 756 aa28.75■■■□□ 2.19
VCP-203ENST00000448530 NPHP3Q7Z494 1330 aa28.74■■■□□ 2.19
VCP-203ENST00000448530 FMN2Q9NZ56 1722 aa28.72■■■□□ 2.19
VCP-203ENST00000448530 PRAM1Q96QH2 718 aa28.71■■■□□ 2.19
VCP-203ENST00000448530 POGKQ9P215 609 aa28.71■■■□□ 2.19
VCP-203ENST00000448530 SAFB2Q14151 953 aaKnown RBP eCLIP28.69■■■□□ 2.18
VCP-203ENST00000448530 FOXO3O43524 673 aa28.68■■■□□ 2.18
VCP-203ENST00000448530 DLC1Q96QB1 1528 aa28.68■■■□□ 2.18
VCP-203ENST00000448530 C8orf37Q96NL8 207 aa28.66■■■□□ 2.18
VCP-203ENST00000448530 ADGRB1O14514 1584 aa28.66■■■□□ 2.18
VCP-203ENST00000448530 AFF2P51816 1311 aa28.66■■■□□ 2.18
VCP-203ENST00000448530 KIF1AQ12756 1690 aa28.65■■■□□ 2.18
VCP-203ENST00000448530 TRAK1Q9UPV9 953 aa28.65■■■□□ 2.18
VCP-203ENST00000448530 ADAMTS2O95450 1211 aa28.63■■■□□ 2.17
VCP-203ENST00000448530 XPCQ01831 940 aaPredicted RBP28.63■■■□□ 2.17
VCP-203ENST00000448530 PXDNQ92626 1479 aa28.63■■■□□ 2.17
VCP-203ENST00000448530 RGPD8O14715 1765 aaPredicted RBP28.6■■■□□ 2.17
VCP-203ENST00000448530 RXRBP28702 533 aa28.6■■■□□ 2.17
VCP-203ENST00000448530 NGLY1Q96IV0 654 aa28.6■■■□□ 2.17
VCP-203ENST00000448530 COL22A1Q8NFW1 1626 aaPredicted RBP28.6■■■□□ 2.17
VCP-203ENST00000448530 PHF8Q9UPP1 1060 aa28.58■■■□□ 2.17
VCP-203ENST00000448530 ADGRB2O60241 1585 aa28.55■■■□□ 2.16
VCP-203ENST00000448530 MINK1Q8N4C8 1332 aaPredicted RBP28.54■■■□□ 2.16
VCP-203ENST00000448530 KRT28Q7Z3Y7 464 aa28.54■■■□□ 2.16
VCP-203ENST00000448530 HIRIP3Q9BW71 556 aaPredicted RBP28.54■■■□□ 2.16
VCP-203ENST00000448530 ANKARQ7Z5J8 1434 aa28.53■■■□□ 2.16
VCP-203ENST00000448530 PSME1Q06323 249 aa28.53■■■□□ 2.16
VCP-203ENST00000448530 EIF3AQ14152 1382 aaKnown RBP28.52■■■□□ 2.16
VCP-203ENST00000448530 QTRT2Q9H974 415 aaKnown RBP28.52■■■□□ 2.16
VCP-203ENST00000448530 SPATA31A3Q5VYP0 1347 aa28.5■■■□□ 2.15
VCP-203ENST00000448530 KIAA1210Q9ULL0 1709 aa28.49■■■□□ 2.15
VCP-203ENST00000448530 ARHGEF28Q8N1W1 1705 aaKnown RBP28.49■■■□□ 2.15
VCP-203ENST00000448530 CDK12Q9NYV4 1490 aaPredicted RBP28.48■■■□□ 2.15
VCP-203ENST00000448530 USP21Q9UK80 565 aa28.48■■■□□ 2.15
VCP-203ENST00000448530 USP32Q8NFA0 1604 aa28.47■■■□□ 2.15
VCP-203ENST00000448530 MARF1Q9Y4F3 1742 aaKnown RBP28.47■■■□□ 2.15
VCP-203ENST00000448530 RBM6P78332 1123 aaKnown RBP28.47■■■□□ 2.15
VCP-203ENST00000448530 WASLO00401 505 aaPredicted RBP28.46■■■□□ 2.15
VCP-203ENST00000448530 PMFBP1Q8TBY8 1022 aa28.46■■■□□ 2.15
VCP-203ENST00000448530 TNS3Q68CZ2 1445 aa28.44■■■□□ 2.14
VCP-203ENST00000448530 TULP4Q9NRJ4 1543 aa28.44■■■□□ 2.14
VCP-203ENST00000448530 FNBP4Q8N3X1 1017 aaPredicted RBP28.44■■■□□ 2.14
VCP-203ENST00000448530 HAP1P54257 671 aaPredicted RBP28.43■■■□□ 2.14
VCP-203ENST00000448530 LMOD2Q6P5Q4 547 aa28.43■■■□□ 2.14
VCP-203ENST00000448530 TRPC5Q9UL62 973 aaPredicted RBP28.43■■■□□ 2.14
VCP-203ENST00000448530 SBNO1A3KN83 1393 aa28.42■■■□□ 2.14
VCP-203ENST00000448530 GPRASP1Q5JY77 1395 aa28.4■■■□□ 2.14
VCP-203ENST00000448530 ARHGEF10O15013 1369 aa28.39■■■□□ 2.14
VCP-203ENST00000448530 PRR36Q9H6K5 1346 aa28.39■■■□□ 2.13
VCP-203ENST00000448530 NBPF1Q3BBV0 1214 aa28.38■■■□□ 2.13
VCP-203ENST00000448530 PLEKHG5O94827 1062 aa28.37■■■□□ 2.13
VCP-203ENST00000448530 NEUROD1Q13562 356 aa28.37■■■□□ 2.13
VCP-203ENST00000448530 NGDNQ8NEJ9 315 aaKnown RBP28.37■■■□□ 2.13
VCP-203ENST00000448530 L3MBTL2Q969R5 705 aa28.37■■■□□ 2.13
VCP-203ENST00000448530 ITSN1Q15811 1721 aa28.37■■■□□ 2.13
VCP-203ENST00000448530 SIN3AQ96ST3 1273 aa28.36■■■□□ 2.13
VCP-203ENST00000448530 RGS12O14924 1447 aa28.35■■■□□ 2.13
VCP-203ENST00000448530 ATRNO75882 1429 aa28.34■■■□□ 2.13
VCP-203ENST00000448530 CABLES1Q8TDN4 633 aa28.33■■■□□ 2.13
VCP-203ENST00000448530 NUDT16Q96DE0 195 aaKnown RBP28.33■■■□□ 2.13
VCP-203ENST00000448530 CDK19Q9BWU1 502 aa28.33■■■□□ 2.13
VCP-203ENST00000448530 BCL9LQ86UU0 1499 aa28.32■■■□□ 2.12
VCP-203ENST00000448530 UPF1Q92900 1129 aaKnown RBP eCLIP28.31■■■□□ 2.12
VCP-203ENST00000448530 TRPM3Q9HCF6 1732 aaPredicted RBP28.31■■■□□ 2.12
VCP-203ENST00000448530 ATP7BP35670 1465 aa28.3■■■□□ 2.12
VCP-203ENST00000448530 PAK3O75914 559 aaPredicted RBP28.29■■■□□ 2.12
VCP-203ENST00000448530 ABCA3Q99758 1704 aa28.29■■■□□ 2.12
VCP-203ENST00000448530 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.29■■■□□ 2.12
VCP-203ENST00000448530 CENPJQ9HC77 1338 aaPredicted RBP28.28■■■□□ 2.12
VCP-203ENST00000448530 UNC5CLQ8IV45 518 aa28.28■■■□□ 2.12
VCP-203ENST00000448530 SLIT2O94813 1529 aa28.27■■■□□ 2.12
VCP-203ENST00000448530 ALS2Q96Q42 1657 aa28.26■■■□□ 2.12
VCP-203ENST00000448530 GJD4Q96KN9 370 aaPredicted RBP28.25■■■□□ 2.11
VCP-203ENST00000448530 CCDC61Q9Y6R9 512 aa28.25■■■□□ 2.11
VCP-203ENST00000448530 QRICH2Q9H0J4 1663 aa28.23■■■□□ 2.11
VCP-203ENST00000448530 TRPM1Q7Z4N2 1603 aa28.23■■■□□ 2.11
VCP-203ENST00000448530 SRPK2P78362 688 aaKnown RBP28.23■■■□□ 2.11
VCP-203ENST00000448530 TRIM26Q12899 539 aaPredicted RBP28.22■■■□□ 2.11
VCP-203ENST00000448530 PLCH1Q4KWH8 1693 aa28.22■■■□□ 2.11
VCP-203ENST00000448530 TOPAZ1Q8N9V7 1692 aa28.22■■■□□ 2.11
VCP-203ENST00000448530 NWD2Q9ULI1 1742 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms