RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 LAMC1P11047 1609 aa15.2■□□□□ 0.02
SMPD4-208ENST00000439029 COL22A1Q8NFW1 1626 aaPredicted RBP15.19■□□□□ 0.02
SMPD4-208ENST00000439029 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
SMPD4-208ENST00000439029 PLEKHG5O94827 1062 aa15.19■□□□□ 0.02
SMPD4-208ENST00000439029 UNC5CLQ8IV45 518 aa15.19■□□□□ 0.02
SMPD4-208ENST00000439029 ESCO1Q5FWF5 840 aa15.18■□□□□ 0.02
SMPD4-208ENST00000439029 ROBO2Q9HCK4 1378 aa15.17■□□□□ 0.02
SMPD4-208ENST00000439029 FOXO3O43524 673 aa15.17■□□□□ 0.02
SMPD4-208ENST00000439029 YY1P25490 414 aa15.16■□□□□ 0.02
SMPD4-208ENST00000439029 APLP2Q06481 763 aa15.16■□□□□ 0.02
SMPD4-208ENST00000439029 MARF1Q9Y4F3 1742 aaKnown RBP15.16■□□□□ 0.02
SMPD4-208ENST00000439029 NUTM2FA1L443 756 aa15.15■□□□□ 0.02
SMPD4-208ENST00000439029 R3HDM1Q15032 1099 aaKnown RBP15.15■□□□□ 0.02
SMPD4-208ENST00000439029 CCDC9Q9Y3X0 531 aaKnown RBP15.15■□□□□ 0.02
SMPD4-208ENST00000439029 KRT27Q7Z3Y8 459 aa15.14■□□□□ 0.01
SMPD4-208ENST00000439029 NPHP3Q7Z494 1330 aa15.14■□□□□ 0.01
SMPD4-208ENST00000439029 NUP155O75694 1391 aa15.13■□□□□ 0.01
SMPD4-208ENST00000439029 A0A0G2JS52 829 aa15.13■□□□□ 0.01
SMPD4-208ENST00000439029 BAG6P46379 1132 aa15.13■□□□□ 0.01
SMPD4-208ENST00000439029 MYT1Q01538 1121 aa15.13■□□□□ 0.01
SMPD4-208ENST00000439029 EN1Q05925 392 aaPredicted RBP15.13■□□□□ 0.01
SMPD4-208ENST00000439029 PXDNQ92626 1479 aa15.13■□□□□ 0.01
SMPD4-208ENST00000439029 SLIT2O94813 1529 aa15.12■□□□□ 0.01
SMPD4-208ENST00000439029 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.11■□□□□ 0.01
SMPD4-208ENST00000439029 FAM182BQ5T319 152 aa15.1■□□□□ 0.01
SMPD4-208ENST00000439029 IQGAP3Q86VI3 1631 aa15.1■□□□□ 0.01
SMPD4-208ENST00000439029 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
SMPD4-208ENST00000439029 VPS72Q15906 364 aa15.09■□□□□ 0.01
SMPD4-208ENST00000439029 CABLES1Q8TDN4 633 aa15.09■□□□□ 0.01
SMPD4-208ENST00000439029 NEXMIFQ5QGS0 1516 aa15.07■□□□□ 0
SMPD4-208ENST00000439029 SPHKAPQ2M3C7 1700 aa15.07■□□□□ 0
SMPD4-208ENST00000439029 ONECUT3O60422 494 aaPredicted RBP15.05■□□□□ -0
SMPD4-208ENST00000439029 FAM98CQ17RN3 349 aaKnown RBP15.05■□□□□ -0
SMPD4-208ENST00000439029 SPATA31A3Q5VYP0 1347 aa15.05■□□□□ -0
SMPD4-208ENST00000439029 EZH2Q15910 746 aaKnown RBP15.04■□□□□ -0
SMPD4-208ENST00000439029 USP32Q8NFA0 1604 aa15.03■□□□□ -0
SMPD4-208ENST00000439029 HFM1A2PYH4 1435 aa15.03■□□□□ -0
SMPD4-208ENST00000439029 LRPPRCP42704 1394 aaKnown RBP15.03■□□□□ -0
SMPD4-208ENST00000439029 ITGAEP38570 1179 aa15.03■□□□□ -0
SMPD4-208ENST00000439029 LMOD2Q6P5Q4 547 aa15.02■□□□□ -0
SMPD4-208ENST00000439029 KRT28Q7Z3Y7 464 aa15.02■□□□□ -0
SMPD4-208ENST00000439029 WAPLQ7Z5K2 1190 aa15.02■□□□□ -0
SMPD4-208ENST00000439029 CLTCL1P53675 1640 aa15.02□□□□□ -0.01
SMPD4-208ENST00000439029 STK26Q9P289 416 aa15.01□□□□□ -0.01
SMPD4-208ENST00000439029 NAIPQ13075 1403 aa15□□□□□ -0.01
SMPD4-208ENST00000439029 FAM83GA6ND36 823 aa15□□□□□ -0.01
SMPD4-208ENST00000439029 PLCH1Q4KWH8 1693 aa15□□□□□ -0.01
SMPD4-208ENST00000439029 CDC42BPGQ6DT37 1551 aa14.99□□□□□ -0.01
SMPD4-208ENST00000439029 VGFO15240 615 aaPredicted RBP14.99□□□□□ -0.01
SMPD4-208ENST00000439029 RGPD1P0DJD0 1748 aa14.97□□□□□ -0.01
SMPD4-208ENST00000439029 ROCK1Q13464 1354 aa14.96□□□□□ -0.02
SMPD4-208ENST00000439029 PLEKHH1Q9ULM0 1364 aa14.96□□□□□ -0.02
SMPD4-208ENST00000439029 CCDC144AA2RUR9 1427 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 PRAG1Q86YV5 1406 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 TRIM37O94972 964 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 CAMKK2Q96RR4 588 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 BTG4Q9NY30 223 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 PPP1R1BQ9UD71 204 aaPredicted RBP14.95□□□□□ -0.02
SMPD4-208ENST00000439029 NWD2Q9ULI1 1742 aa14.95□□□□□ -0.02
SMPD4-208ENST00000439029 KIF1BO60333 1816 aa14.94□□□□□ -0.02
SMPD4-208ENST00000439029 TNS3Q68CZ2 1445 aa14.94□□□□□ -0.02
SMPD4-208ENST00000439029 SENP3-EIF4A1A0A087X0R7 540 aa14.93□□□□□ -0.02
SMPD4-208ENST00000439029 DCAF8L1A6NGE4 600 aa14.93□□□□□ -0.02
SMPD4-208ENST00000439029 APBA3O96018 575 aa14.93□□□□□ -0.02
SMPD4-208ENST00000439029 TNS1Q9HBL0 1735 aaKnown RBP14.92□□□□□ -0.02
SMPD4-208ENST00000439029 PSME1Q06323 249 aa14.92□□□□□ -0.02
SMPD4-208ENST00000439029 PHF8Q9UPP1 1060 aa14.92□□□□□ -0.02
SMPD4-208ENST00000439029 DISP2A7MBM2 1401 aa14.92□□□□□ -0.02
SMPD4-208ENST00000439029 TMEM132EQ6IEE7 984 aa14.91□□□□□ -0.02
SMPD4-208ENST00000439029 NRAPQ86VF7 1730 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 ABCA3Q99758 1704 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 FMN2Q9NZ56 1722 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 KIF1AQ12756 1690 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 CAMTA1Q9Y6Y1 1673 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 SPATA31A5Q5VU36 1347 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 SPATA31A7Q8IWB4 1347 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 ADGRF5Q8IZF2 1346 aa14.89□□□□□ -0.03
SMPD4-208ENST00000439029 RGPD8O14715 1765 aaPredicted RBP14.88□□□□□ -0.03
SMPD4-208ENST00000439029 IFFO2Q5TF58 517 aa14.88□□□□□ -0.03
SMPD4-208ENST00000439029 ZNF784Q8NCA9 323 aaPredicted RBP14.88□□□□□ -0.03
SMPD4-208ENST00000439029 PMFBP1Q8TBY8 1022 aa14.88□□□□□ -0.03
SMPD4-208ENST00000439029 SPON1Q9HCB6 807 aa14.88□□□□□ -0.03
SMPD4-208ENST00000439029 RPGRIP1LQ68CZ1 1315 aa14.88□□□□□ -0.03
SMPD4-208ENST00000439029 ARHGEF10O15013 1369 aa14.86□□□□□ -0.03
SMPD4-208ENST00000439029 KCNQ2O43526 872 aa14.86□□□□□ -0.03
SMPD4-208ENST00000439029 NBPF8Q3BBV2 869 aa14.86□□□□□ -0.03
SMPD4-208ENST00000439029 NBPF14Q5TI25 921 aa14.86□□□□□ -0.03
SMPD4-208ENST00000439029 FAM196AQ6ZSG2 479 aa14.86□□□□□ -0.03
SMPD4-208ENST00000439029 SBNO1A3KN83 1393 aa14.85□□□□□ -0.03
SMPD4-208ENST00000439029 PPLO60437 1756 aa14.85□□□□□ -0.03
SMPD4-208ENST00000439029 SAFB2Q14151 953 aaKnown RBP eCLIP14.85□□□□□ -0.03
SMPD4-208ENST00000439029 ADGRB2O60241 1585 aa14.85□□□□□ -0.03
SMPD4-208ENST00000439029 THSD7AQ9UPZ6 1657 aa14.84□□□□□ -0.03
SMPD4-208ENST00000439029 TECPR2O15040 1411 aa14.83□□□□□ -0.03
SMPD4-208ENST00000439029 RGL3Q3MIN7 710 aa14.83□□□□□ -0.04
SMPD4-208ENST00000439029 STRN4Q9NRL3 753 aa14.83□□□□□ -0.04
SMPD4-208ENST00000439029 USP35Q9P2H5 1018 aa14.83□□□□□ -0.04
SMPD4-208ENST00000439029 ABCC11Q96J66 1382 aa14.83□□□□□ -0.04
SMPD4-208ENST00000439029 NINLQ9Y2I6 1382 aa14.83□□□□□ -0.04
SMPD4-208ENST00000439029 NUP188Q5SRE5 1749 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms