RNA–Protein interactions for RNA: ENST00000430982.1

PTCD1-204, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 571 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-204ENST00000430982 FNBP4Q8N3X1 1017 aaPredicted RBP22.4■■□□□ 1.18
PTCD1-204ENST00000430982 CCDC144AA2RUR9 1427 aa22.4■■□□□ 1.18
PTCD1-204ENST00000430982 ADAMTS2O95450 1211 aa22.37■■□□□ 1.17
PTCD1-204ENST00000430982 TRPC5Q9UL62 973 aaPredicted RBP22.37■■□□□ 1.17
PTCD1-204ENST00000430982 USP21Q9UK80 565 aa22.36■■□□□ 1.17
PTCD1-204ENST00000430982 MYOM2P54296 1465 aa22.35■■□□□ 1.17
PTCD1-204ENST00000430982 KIF1BO60333 1816 aa22.35■■□□□ 1.17
PTCD1-204ENST00000430982 TRIM26Q12899 539 aaPredicted RBP22.33■■□□□ 1.17
PTCD1-204ENST00000430982 ZRANB1Q9UGI0 708 aa22.32■■□□□ 1.16
PTCD1-204ENST00000430982 BCL9LQ86UU0 1499 aa22.32■■□□□ 1.16
PTCD1-204ENST00000430982 ROBO2Q9HCK4 1378 aa22.31■■□□□ 1.16
PTCD1-204ENST00000430982 RGL3Q3MIN7 710 aa22.31■■□□□ 1.16
PTCD1-204ENST00000430982 ORAI2Q96SN7 254 aa22.31■■□□□ 1.16
PTCD1-204ENST00000430982 MARF1Q9Y4F3 1742 aaKnown RBP22.31■■□□□ 1.16
PTCD1-204ENST00000430982 CCDC125Q86Z20 511 aa22.3■■□□□ 1.16
PTCD1-204ENST00000430982 RPGRIP1LQ68CZ1 1315 aa22.3■■□□□ 1.16
PTCD1-204ENST00000430982 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.28■■□□□ 1.16
PTCD1-204ENST00000430982 PXDNQ92626 1479 aa22.28■■□□□ 1.16
PTCD1-204ENST00000430982 ANKRD30BQ9BXX2 1392 aa22.27■■□□□ 1.16
PTCD1-204ENST00000430982 VGFO15240 615 aaPredicted RBP22.27■■□□□ 1.16
PTCD1-204ENST00000430982 SPATA31E1Q6ZUB1 1445 aa22.27■■□□□ 1.16
PTCD1-204ENST00000430982 CDC42BPGQ6DT37 1551 aa22.26■■□□□ 1.15
PTCD1-204ENST00000430982 GLI3P10071 1580 aa22.21■■□□□ 1.15
PTCD1-204ENST00000430982 NPHP3Q7Z494 1330 aa22.21■■□□□ 1.15
PTCD1-204ENST00000430982 GJD4Q96KN9 370 aaPredicted RBP22.2■■□□□ 1.14
PTCD1-204ENST00000430982 BLMP54132 1417 aaPredicted RBP22.2■■□□□ 1.14
PTCD1-204ENST00000430982 SLIT2O94813 1529 aa22.19■■□□□ 1.14
PTCD1-204ENST00000430982 PPLO60437 1756 aa22.18■■□□□ 1.14
PTCD1-204ENST00000430982 LRP5O75197 1615 aa22.18■■□□□ 1.14
PTCD1-204ENST00000430982 ADGRF5Q8IZF2 1346 aa22.18■■□□□ 1.14
PTCD1-204ENST00000430982 RALGAPBQ86X10 1494 aa22.16■■□□□ 1.14
PTCD1-204ENST00000430982 BRWD3Q6RI45 1802 aa22.13■■□□□ 1.13
PTCD1-204ENST00000430982 TECPR2O15040 1411 aa22.13■■□□□ 1.13
PTCD1-204ENST00000430982 USP32Q8NFA0 1604 aa22.12■■□□□ 1.13
PTCD1-204ENST00000430982 ESCO1Q5FWF5 840 aa22.11■■□□□ 1.13
PTCD1-204ENST00000430982 UNC5CLQ8IV45 518 aa22.11■■□□□ 1.13
PTCD1-204ENST00000430982 FOXO3O43524 673 aa22.1■■□□□ 1.13
PTCD1-204ENST00000430982 IFT172Q9UG01 1749 aa22.1■■□□□ 1.13
PTCD1-204ENST00000430982 LRPPRCP42704 1394 aaKnown RBP22.1■■□□□ 1.13
PTCD1-204ENST00000430982 KDM2AQ9Y2K7 1162 aa22.09■■□□□ 1.13
PTCD1-204ENST00000430982 KIF1AQ12756 1690 aa22.07■■□□□ 1.12
PTCD1-204ENST00000430982 PIK3C2GO75747 1445 aa22.07■■□□□ 1.12
PTCD1-204ENST00000430982 XPCQ01831 940 aaPredicted RBP22.07■■□□□ 1.12
PTCD1-204ENST00000430982 DCAF11Q8TEB1 546 aa22.07■■□□□ 1.12
PTCD1-204ENST00000430982 DHX57Q6P158 1386 aaKnown RBP22.07■■□□□ 1.12
PTCD1-204ENST00000430982 SPATA31A3Q5VYP0 1347 aa22.06■■□□□ 1.12
PTCD1-204ENST00000430982 KNDC1Q76NI1 1749 aa22.06■■□□□ 1.12
PTCD1-204ENST00000430982 FMN2Q9NZ56 1722 aa22.06■■□□□ 1.12
PTCD1-204ENST00000430982 DEFB132Q7Z7B7 95 aa22.06■■□□□ 1.12
PTCD1-204ENST00000430982 NWD2Q9ULI1 1742 aa22.05■■□□□ 1.12
PTCD1-204ENST00000430982 NRXN1Q9ULB1 1477 aa22.03■■□□□ 1.12
PTCD1-204ENST00000430982 ONECUT3O60422 494 aaPredicted RBP22.03■■□□□ 1.12
PTCD1-204ENST00000430982 CFAP70Q5T0N1 1121 aa22.03■■□□□ 1.12
PTCD1-204ENST00000430982 TMEM132EQ6IEE7 984 aa22.03■■□□□ 1.12
PTCD1-204ENST00000430982 PLCH1Q4KWH8 1693 aa22.03■■□□□ 1.12
PTCD1-204ENST00000430982 SIN3AQ96ST3 1273 aa22.02■■□□□ 1.12
PTCD1-204ENST00000430982 C14orf93Q9H972 538 aaKnown RBP22.02■■□□□ 1.12
PTCD1-204ENST00000430982 STK26Q9P289 416 aa22.02■■□□□ 1.12
PTCD1-204ENST00000430982 ABCA3Q99758 1704 aa22.01■■□□□ 1.11
PTCD1-204ENST00000430982 PCGF6Q9BYE7 350 aa22.01■■□□□ 1.11
PTCD1-204ENST00000430982 ABCC11Q96J66 1382 aa22■■□□□ 1.11
PTCD1-204ENST00000430982 NEUROD1Q13562 356 aa22■■□□□ 1.11
PTCD1-204ENST00000430982 VPS72Q15906 364 aa22■■□□□ 1.11
PTCD1-204ENST00000430982 SEPT12Q8IYM1 358 aa22■■□□□ 1.11
PTCD1-204ENST00000430982 STAC3Q96MF2 364 aa21.99■■□□□ 1.11
PTCD1-204ENST00000430982 TNS3Q68CZ2 1445 aa21.98■■□□□ 1.11
PTCD1-204ENST00000430982 PLEKHH1Q9ULM0 1364 aa21.98■■□□□ 1.11
PTCD1-204ENST00000430982 WAPLQ7Z5K2 1190 aa21.97■■□□□ 1.11
PTCD1-204ENST00000430982 SF3B2Q13435 895 aaKnown RBP21.96■■□□□ 1.11
PTCD1-204ENST00000430982 NUTM2FA1L443 756 aa21.95■■□□□ 1.1
PTCD1-204ENST00000430982 YTHDC2Q9H6S0 1430 aaKnown RBP21.95■■□□□ 1.1
PTCD1-204ENST00000430982 KRT27Q7Z3Y8 459 aa21.94■■□□□ 1.1
PTCD1-204ENST00000430982 NRAPQ86VF7 1730 aa21.94■■□□□ 1.1
PTCD1-204ENST00000430982 KRT28Q7Z3Y7 464 aa21.93■■□□□ 1.1
PTCD1-204ENST00000430982 SBNO1A3KN83 1393 aa21.92■■□□□ 1.1
PTCD1-204ENST00000430982 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
PTCD1-204ENST00000430982 RGPD8O14715 1765 aaPredicted RBP21.92■■□□□ 1.1
PTCD1-204ENST00000430982 SIRT1Q96EB6 747 aa21.89■■□□□ 1.09
PTCD1-204ENST00000430982 RGPD1P0DJD0 1748 aa21.89■■□□□ 1.09
PTCD1-204ENST00000430982 DISP2A7MBM2 1401 aa21.89■■□□□ 1.09
PTCD1-204ENST00000430982 ARHGEF10O15013 1369 aa21.88■■□□□ 1.09
PTCD1-204ENST00000430982 BAG6P46379 1132 aa21.88■■□□□ 1.09
PTCD1-204ENST00000430982 CABLES1Q8TDN4 633 aa21.88■■□□□ 1.09
PTCD1-204ENST00000430982 PSDA5PKW4 1024 aaPredicted RBP21.87■■□□□ 1.09
PTCD1-204ENST00000430982 ADGRB1O14514 1584 aa21.87■■□□□ 1.09
PTCD1-204ENST00000430982 PSME1Q06323 249 aa21.86■■□□□ 1.09
PTCD1-204ENST00000430982 PHF8Q9UPP1 1060 aa21.86■■□□□ 1.09
PTCD1-204ENST00000430982 TRAK1Q9UPV9 953 aa21.86■■□□□ 1.09
PTCD1-204ENST00000430982 TNS1Q9HBL0 1735 aaKnown RBP21.86■■□□□ 1.09
PTCD1-204ENST00000430982 TRPM3Q9HCF6 1732 aaPredicted RBP21.84■■□□□ 1.09
PTCD1-204ENST00000430982 FAM83GA6ND36 823 aa21.84■■□□□ 1.09
PTCD1-204ENST00000430982 SAFB2Q14151 953 aaKnown RBP eCLIP21.84■■□□□ 1.09
PTCD1-204ENST00000430982 PRAM1Q96QH2 718 aa21.84■■□□□ 1.09
PTCD1-204ENST00000430982 POGKQ9P215 609 aa21.84■■□□□ 1.09
PTCD1-204ENST00000430982 THSD7AQ9UPZ6 1657 aa21.84■■□□□ 1.09
PTCD1-204ENST00000430982 COL14A1Q05707 1796 aaKnown RBP21.82■■□□□ 1.08
PTCD1-204ENST00000430982 HAP1P54257 671 aaPredicted RBP21.82■■□□□ 1.08
PTCD1-204ENST00000430982 CCDC9Q9Y3X0 531 aaKnown RBP21.82■■□□□ 1.08
PTCD1-204ENST00000430982 ALS2Q96Q42 1657 aa21.82■■□□□ 1.08
PTCD1-204ENST00000430982 TONSLQ96HA7 1378 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms