RNA–Protein interactions for RNA: ENST00000429595.1

PTPRK-211, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 3

Gene PTPRK, Length 558 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-211ENST00000429595 MSS51Q4VC12 460 aa12.98□□□□□ -0.33
PTPRK-211ENST00000429595 ZNF787Q6DD87 383 aa12.98□□□□□ -0.33
PTPRK-211ENST00000429595 CCDC102AQ96A19 550 aa12.98□□□□□ -0.33
PTPRK-211ENST00000429595 SCRIBQ14160 1630 aa12.98□□□□□ -0.33
PTPRK-211ENST00000429595 FAM187AA6NFU0 413 aa12.97□□□□□ -0.33
PTPRK-211ENST00000429595 TULP1O00294 542 aaPredicted RBP12.97□□□□□ -0.33
PTPRK-211ENST00000429595 RPIAP49247 311 aa12.97□□□□□ -0.33
PTPRK-211ENST00000429595 FOXC1Q12948 553 aa12.96□□□□□ -0.33
PTPRK-211ENST00000429595 HLA-CQ95604 372 aa12.96□□□□□ -0.33
PTPRK-211ENST00000429595 GRIPAP1Q4V328 841 aa12.94□□□□□ -0.34
PTPRK-211ENST00000429595 KDM4AO75164 1064 aa12.93□□□□□ -0.34
PTPRK-211ENST00000429595 LMOD2Q6P5Q4 547 aa12.91□□□□□ -0.34
PTPRK-211ENST00000429595 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.91□□□□□ -0.34
PTPRK-211ENST00000429595 POTECB2RU33 542 aa12.9□□□□□ -0.34
PTPRK-211ENST00000429595 MMP16P51512 607 aa12.9□□□□□ -0.34
PTPRK-211ENST00000429595 Q3C1V9 767 aa12.9□□□□□ -0.34
PTPRK-211ENST00000429595 ST8SIA5O15466 376 aa12.88□□□□□ -0.35
PTPRK-211ENST00000429595 HOXA2O43364 376 aa12.88□□□□□ -0.35
PTPRK-211ENST00000429595 CD2BP2O95400 341 aaKnown RBP12.88□□□□□ -0.35
PTPRK-211ENST00000429595 GPCPD1Q9NPB8 672 aa12.88□□□□□ -0.35
PTPRK-211ENST00000429595 FAM217BQ9NTX9 383 aaPredicted RBP12.88□□□□□ -0.35
PTPRK-211ENST00000429595 TOR4AQ9NXH8 423 aa12.88□□□□□ -0.35
PTPRK-211ENST00000429595 GUCA2AQ02747 115 aa12.87□□□□□ -0.35
PTPRK-211ENST00000429595 USP46P62068 366 aa12.86□□□□□ -0.35
PTPRK-211ENST00000429595 USB1Q9BQ65 265 aaKnown RBP12.86□□□□□ -0.35
PTPRK-211ENST00000429595 REPIN1Q9BWE0 567 aaKnown RBP12.86□□□□□ -0.35
PTPRK-211ENST00000429595 AAASQ9NRG9 546 aa12.86□□□□□ -0.35
PTPRK-211ENST00000429595 DXOO77932 396 aaKnown RBP12.85□□□□□ -0.35
PTPRK-211ENST00000429595 ZNF775Q96BV0 537 aaPredicted RBP12.85□□□□□ -0.35
PTPRK-211ENST00000429595 CLCN1P35523 988 aa12.84□□□□□ -0.35
PTPRK-211ENST00000429595 ZBTB24O43167 697 aaPredicted RBP12.82□□□□□ -0.36
PTPRK-211ENST00000429595 TRIM32Q13049 653 aa12.81□□□□□ -0.36
PTPRK-211ENST00000429595 SYMPKQ92797 1274 aaKnown RBP12.81□□□□□ -0.36
PTPRK-211ENST00000429595 AVPP01185 164 aa12.8□□□□□ -0.36
PTPRK-211ENST00000429595 CYP4X1Q8N118 509 aa12.8□□□□□ -0.36
PTPRK-211ENST00000429595 CRIPAKQ8N1N5 446 aa12.79□□□□□ -0.36
PTPRK-211ENST00000429595 DACH1Q9UI36 760 aa12.79□□□□□ -0.36
PTPRK-211ENST00000429595 WNT7AO00755 349 aa12.77□□□□□ -0.37
PTPRK-211ENST00000429595 BARGINQ6ZT62 677 aa12.76□□□□□ -0.37
PTPRK-211ENST00000429595 ZMYND10O75800 440 aa12.75□□□□□ -0.37
PTPRK-211ENST00000429595 PCDHGC3Q9UN70 934 aa12.75□□□□□ -0.37
PTPRK-211ENST00000429595 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
PTPRK-211ENST00000429595 NUTM1Q86Y26 1132 aa12.74□□□□□ -0.37
PTPRK-211ENST00000429595 CCDC24Q8N4L8 307 aa12.74□□□□□ -0.37
PTPRK-211ENST00000429595 KRI1Q8N9T8 703 aaKnown RBP12.74□□□□□ -0.37
PTPRK-211ENST00000429595 TTC24A2A3L6 582 aaPredicted RBP12.73□□□□□ -0.37
PTPRK-211ENST00000429595 SMPD1P17405 629 aa12.73□□□□□ -0.37
PTPRK-211ENST00000429595 JUNDP17535 347 aa12.73□□□□□ -0.37
PTPRK-211ENST00000429595 SKOR1P84550 965 aa12.73□□□□□ -0.37
PTPRK-211ENST00000429595 MRGPRX2Q96LB1 330 aa12.73□□□□□ -0.37
PTPRK-211ENST00000429595 SSTR3P32745 418 aaPredicted RBP12.72□□□□□ -0.37
PTPRK-211ENST00000429595 ZC3H15Q8WU90 426 aaKnown RBP12.72□□□□□ -0.37
PTPRK-211ENST00000429595 RETREG3Q86VR2 466 aa12.71□□□□□ -0.37
PTPRK-211ENST00000429595 SNIP1Q8TAD8 396 aaKnown RBP12.71□□□□□ -0.37
PTPRK-211ENST00000429595 AXIN1O15169 862 aa12.7□□□□□ -0.38
PTPRK-211ENST00000429595 FDX1P10109 184 aa12.7□□□□□ -0.38
PTPRK-211ENST00000429595 SMCPP49901 116 aaPredicted RBP12.7□□□□□ -0.38
PTPRK-211ENST00000429595 AMHR2Q16671 573 aa12.7□□□□□ -0.38
PTPRK-211ENST00000429595 SPIRE2Q8WWL2 714 aa12.7□□□□□ -0.38
PTPRK-211ENST00000429595 J3QL48 77 aa12.69□□□□□ -0.38
PTPRK-211ENST00000429595 CTC1Q2NKJ3 1217 aa12.69□□□□□ -0.38
PTPRK-211ENST00000429595 GMPR2Q9P2T1 348 aaKnown RBP12.68□□□□□ -0.38
PTPRK-211ENST00000429595 NDUFV2P19404 249 aa12.67□□□□□ -0.38
PTPRK-211ENST00000429595 TTLL12Q14166 644 aaPredicted RBP12.67□□□□□ -0.38
PTPRK-211ENST00000429595 PTCRAQ6ISU1 281 aaPredicted RBP12.67□□□□□ -0.38
PTPRK-211ENST00000429595 ZCCHC6Q5VYS8 1495 aaKnown RBP12.66□□□□□ -0.38
PTPRK-211ENST00000429595 MOXD2PA6NHM9 499 aa12.66□□□□□ -0.38
PTPRK-211ENST00000429595 RC3H1Q5TC82 1133 aaKnown RBP12.66□□□□□ -0.38
PTPRK-211ENST00000429595 GIGYF2Q6Y7W6 1299 aaKnown RBP12.66□□□□□ -0.38
PTPRK-211ENST00000429595 NUDT12Q9BQG2 462 aa12.66□□□□□ -0.38
PTPRK-211ENST00000429595 NESP48681 1621 aa12.66□□□□□ -0.38
PTPRK-211ENST00000429595 WNT7BP56706 349 aa12.65□□□□□ -0.38
PTPRK-211ENST00000429595 C6orf229H3BNL8 230 aa12.64□□□□□ -0.39
PTPRK-211ENST00000429595 NCAPD3P42695 1498 aa12.63□□□□□ -0.39
PTPRK-211ENST00000429595 HPS1Q92902 700 aa12.62□□□□□ -0.39
PTPRK-211ENST00000429595 LCE2AQ5TA79 106 aaPredicted RBP12.61□□□□□ -0.39
PTPRK-211ENST00000429595 MS4A1P11836 297 aa12.6□□□□□ -0.39
PTPRK-211ENST00000429595 PARP9Q8IXQ6 854 aa12.6□□□□□ -0.39
PTPRK-211ENST00000429595 THOC2Q8NI27 1593 aaKnown RBP12.6□□□□□ -0.39
PTPRK-211ENST00000429595 BEGAINQ9BUH8 593 aa12.59□□□□□ -0.39
PTPRK-211ENST00000429595 CCNYL3P0C7X3 344 aa12.58□□□□□ -0.4
PTPRK-211ENST00000429595 ATP13A2Q9NQ11 1180 aa12.58□□□□□ -0.4
PTPRK-211ENST00000429595 C11orf95C9JLR9 678 aaPredicted RBP12.57□□□□□ -0.4
PTPRK-211ENST00000429595 PRR7Q8TB68 274 aa12.57□□□□□ -0.4
PTPRK-211ENST00000429595 SMARCA2P51531 1590 aa12.56□□□□□ -0.4
PTPRK-211ENST00000429595 TRIM66O15016 1216 aa12.56□□□□□ -0.4
PTPRK-211ENST00000429595 SIAH2O43255 324 aa12.56□□□□□ -0.4
PTPRK-211ENST00000429595 PTPRNQ16849 979 aa12.56□□□□□ -0.4
PTPRK-211ENST00000429595 TREML4Q6UXN2 200 aa12.56□□□□□ -0.4
PTPRK-211ENST00000429595 SH3BP2P78314 561 aa12.55□□□□□ -0.4
PTPRK-211ENST00000429595 TBC1D2Q9BYX2 928 aa12.55□□□□□ -0.4
PTPRK-211ENST00000429595 ALDH1A1P00352 501 aa12.54□□□□□ -0.4
PTPRK-211ENST00000429595 MTMR2Q13614 643 aa12.54□□□□□ -0.4
PTPRK-211ENST00000429595 RSBN1LQ6PCB5 846 aaPredicted RBP12.53□□□□□ -0.4
PTPRK-211ENST00000429595 UNC93B1Q9H1C4 597 aa12.53□□□□□ -0.4
PTPRK-211ENST00000429595 EVA1BQ9NVM1 165 aa12.53□□□□□ -0.4
PTPRK-211ENST00000429595 SNRPBP14678 240 aaKnown RBP12.52□□□□□ -0.41
PTPRK-211ENST00000429595 EHBP1Q8NDI1 1231 aa12.52□□□□□ -0.41
PTPRK-211ENST00000429595 PCDHB15Q9Y5E8 787 aa12.52□□□□□ -0.41
PTPRK-211ENST00000429595 GJA5P36382 358 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms