RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ADGRB1O14514 1584 aa14.16□□□□□ -0.14
CUX1-205ENST00000425244 ZFYVE9O95405 1425 aa14.16□□□□□ -0.14
CUX1-205ENST00000425244 EID1Q9Y6B2 187 aa14.16□□□□□ -0.14
CUX1-205ENST00000425244 POGKQ9P215 609 aa14.16□□□□□ -0.14
CUX1-205ENST00000425244 PRAM1Q96QH2 718 aa14.15□□□□□ -0.14
CUX1-205ENST00000425244 NLRP1Q9C000 1473 aa14.15□□□□□ -0.14
CUX1-205ENST00000425244 THEMISQ8N1K5 641 aaPredicted RBP14.15□□□□□ -0.14
CUX1-205ENST00000425244 ALKQ9UM73 1620 aa14.14□□□□□ -0.15
CUX1-205ENST00000425244 EXOC6Q8TAG9 804 aa14.14□□□□□ -0.15
CUX1-205ENST00000425244 SETBP1Q9Y6X0 1596 aa14.14□□□□□ -0.15
CUX1-205ENST00000425244 MINK1Q8N4C8 1332 aaPredicted RBP14.13□□□□□ -0.15
CUX1-205ENST00000425244 PDE3BQ13370 1112 aa14.13□□□□□ -0.15
CUX1-205ENST00000425244 WAPLQ7Z5K2 1190 aa14.13□□□□□ -0.15
CUX1-205ENST00000425244 ADAMTSL3P82987 1691 aa14.13□□□□□ -0.15
CUX1-205ENST00000425244 YTHDC2Q9H6S0 1430 aaKnown RBP14.12□□□□□ -0.15
CUX1-205ENST00000425244 ASXL1Q8IXJ9 1541 aa14.12□□□□□ -0.15
CUX1-205ENST00000425244 METP08581 1390 aa14.12□□□□□ -0.15
CUX1-205ENST00000425244 CDCA8Q53HL2 280 aa14.11□□□□□ -0.15
CUX1-205ENST00000425244 MYO3AQ8NEV4 1616 aa14.11□□□□□ -0.15
CUX1-205ENST00000425244 ADAMTS8Q9UP79 889 aa14.11□□□□□ -0.15
CUX1-205ENST00000425244 PTPRMP28827 1452 aa14.1□□□□□ -0.15
CUX1-205ENST00000425244 PLIN1O60240 522 aa14.1□□□□□ -0.15
CUX1-205ENST00000425244 PPP2R1AP30153 589 aa14.1□□□□□ -0.15
CUX1-205ENST00000425244 WDR43Q15061 677 aaKnown RBP eCLIP14.1□□□□□ -0.15
CUX1-205ENST00000425244 CABP2Q9NPB3 220 aa14.1□□□□□ -0.15
CUX1-205ENST00000425244 QRICH2Q9H0J4 1663 aa14.09□□□□□ -0.15
CUX1-205ENST00000425244 SRPK2P78362 688 aaKnown RBP14.09□□□□□ -0.15
CUX1-205ENST00000425244 BLMP54132 1417 aaPredicted RBP14.09□□□□□ -0.15
CUX1-205ENST00000425244 AMER1Q5JTC6 1135 aaPredicted RBP14.09□□□□□ -0.15
CUX1-205ENST00000425244 ARHGEF28Q8N1W1 1705 aaKnown RBP14.08□□□□□ -0.16
CUX1-205ENST00000425244 CEP170BQ9Y4F5 1589 aaPredicted RBP14.08□□□□□ -0.16
CUX1-205ENST00000425244 SLC12A5Q9H2X9 1139 aa14.07□□□□□ -0.16
CUX1-205ENST00000425244 PLEKHH1Q9ULM0 1364 aa14.07□□□□□ -0.16
CUX1-205ENST00000425244 NRXN3Q9Y4C0 1643 aa14.07□□□□□ -0.16
CUX1-205ENST00000425244 EVC2Q86UK5 1308 aa14.06□□□□□ -0.16
CUX1-205ENST00000425244 KDM5AP29375 1690 aaKnown RBP14.05□□□□□ -0.16
CUX1-205ENST00000425244 PLEKHG1Q9ULL1 1385 aa14.05□□□□□ -0.16
CUX1-205ENST00000425244 ANKLE2Q86XL3 938 aa14.05□□□□□ -0.16
CUX1-205ENST00000425244 SETD1BQ9UPS6 1966 aaKnown RBP14.04□□□□□ -0.16
CUX1-205ENST00000425244 ADAMTS13Q76LX8 1427 aa14.04□□□□□ -0.16
CUX1-205ENST00000425244 NUTM2FA1L443 756 aa14.04□□□□□ -0.16
CUX1-205ENST00000425244 CCDC146Q8IYE0 955 aa14.03□□□□□ -0.16
CUX1-205ENST00000425244 SETD1AO15047 1707 aaKnown RBP14.03□□□□□ -0.16
CUX1-205ENST00000425244 SBNO2Q9Y2G9 1366 aa14.03□□□□□ -0.16
CUX1-205ENST00000425244 ANP32AP39687 249 aaKnown RBP14.02□□□□□ -0.16
CUX1-205ENST00000425244 CRBNQ96SW2 442 aa14.02□□□□□ -0.16
CUX1-205ENST00000425244 CDK19Q9BWU1 502 aa14.02□□□□□ -0.16
CUX1-205ENST00000425244 AMOTL2Q9Y2J4 779 aa14.02□□□□□ -0.16
CUX1-205ENST00000425244 INSRP06213 1382 aa14.02□□□□□ -0.16
CUX1-205ENST00000425244 SLIT1O75093 1534 aa14.02□□□□□ -0.16
CUX1-205ENST00000425244 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.17
CUX1-205ENST00000425244 ARHGAP23Q9P227 1491 aa14.01□□□□□ -0.17
CUX1-205ENST00000425244 KDM4FA0A1W2PPD8 638 aa14.01□□□□□ -0.17
CUX1-205ENST00000425244 HSPA2P54652 639 aa14.01□□□□□ -0.17
CUX1-205ENST00000425244 NCKAP5LQ9HCH0 1330 aa14.01□□□□□ -0.17
CUX1-205ENST00000425244 TULP4Q9NRJ4 1543 aa14.01□□□□□ -0.17
CUX1-205ENST00000425244 NOP58Q9Y2X3 529 aaKnown RBP14□□□□□ -0.17
CUX1-205ENST00000425244 ABCC11Q96J66 1382 aa14□□□□□ -0.17
CUX1-205ENST00000425244 ROBO2Q9HCK4 1378 aa14□□□□□ -0.17
CUX1-205ENST00000425244 C20orf194Q5TEA3 1177 aa13.99□□□□□ -0.17
CUX1-205ENST00000425244 NPM2Q86SE8 214 aaKnown RBP13.99□□□□□ -0.17
CUX1-205ENST00000425244 CARD14Q9BXL6 1004 aa13.99□□□□□ -0.17
CUX1-205ENST00000425244 ANO8Q9HCE9 1232 aaPredicted RBP13.99□□□□□ -0.17
CUX1-205ENST00000425244 MYOM1P52179 1685 aa13.99□□□□□ -0.17
CUX1-205ENST00000425244 PAK3O75914 559 aaPredicted RBP13.98□□□□□ -0.17
CUX1-205ENST00000425244 GOLGA2Q08379 1002 aa13.98□□□□□ -0.17
CUX1-205ENST00000425244 TBX22Q9Y458 520 aa13.98□□□□□ -0.17
CUX1-205ENST00000425244 PTPRUQ92729 1446 aa13.98□□□□□ -0.17
CUX1-205ENST00000425244 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
CUX1-205ENST00000425244 KCNA6P17658 529 aa13.97□□□□□ -0.17
CUX1-205ENST00000425244 DUSP27Q5VZP5 1158 aa13.97□□□□□ -0.17
CUX1-205ENST00000425244 SKAP1Q86WV1 359 aa13.97□□□□□ -0.17
CUX1-205ENST00000425244 CABP1Q9NZU7 370 aa13.97□□□□□ -0.17
CUX1-205ENST00000425244 APAF1O14727 1248 aa13.96□□□□□ -0.17
CUX1-205ENST00000425244 TCERG1O14776 1098 aaKnown RBP13.96□□□□□ -0.17
CUX1-205ENST00000425244 WASLO00401 505 aaPredicted RBP13.94□□□□□ -0.18
CUX1-205ENST00000425244 IPO9Q96P70 1041 aaKnown RBP13.94□□□□□ -0.18
CUX1-205ENST00000425244 ZNF142P52746 1687 aaPredicted RBP13.94□□□□□ -0.18
CUX1-205ENST00000425244 NSD3Q9BZ95 1437 aa13.94□□□□□ -0.18
CUX1-205ENST00000425244 NPC1L1Q9UHC9 1359 aa13.94□□□□□ -0.18
CUX1-205ENST00000425244 MED14O60244 1454 aa13.94□□□□□ -0.18
CUX1-205ENST00000425244 NBR1Q14596 966 aa13.94□□□□□ -0.18
CUX1-205ENST00000425244 ZNF521Q96K83 1311 aa13.93□□□□□ -0.18
CUX1-205ENST00000425244 PDE4AP27815 886 aa13.93□□□□□ -0.18
CUX1-205ENST00000425244 DLC1Q96QB1 1528 aa13.93□□□□□ -0.18
CUX1-205ENST00000425244 ZBTB47Q9UFB7 747 aaPredicted RBP13.92□□□□□ -0.18
CUX1-205ENST00000425244 SLFN5Q08AF3 891 aa13.92□□□□□ -0.18
CUX1-205ENST00000425244 SPINK5Q9NQ38 1064 aaPredicted RBP13.92□□□□□ -0.18
CUX1-205ENST00000425244 ATAD2Q6PL18 1390 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 C14orf37Q86TY3 774 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.91□□□□□ -0.183e-6■□□□□ 10.3
CUX1-205ENST00000425244 NUDT16Q96DE0 195 aaKnown RBP13.91□□□□□ -0.18
CUX1-205ENST00000425244 A0A1W2PP64 1363 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 MORC1Q86VD1 984 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 TECPR2O15040 1411 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 NPHP4O75161 1426 aaPredicted RBP13.91□□□□□ -0.18
CUX1-205ENST00000425244 FAM135BQ49AJ0 1406 aa13.91□□□□□ -0.18
CUX1-205ENST00000425244 TERF2IPQ9NYB0 399 aa13.9□□□□□ -0.18
CUX1-205ENST00000425244 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.9□□□□□ -0.18
CUX1-205ENST00000425244 CPS1P31327 1500 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms