RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 PPLO60437 1756 aa18.38■□□□□ 0.53
LIMS2-210ENST00000413578 TECPR2O15040 1411 aa18.38■□□□□ 0.53
LIMS2-210ENST00000413578 ATRNO75882 1429 aa18.37■□□□□ 0.53
LIMS2-210ENST00000413578 PXDNQ92626 1479 aa18.37■□□□□ 0.53
LIMS2-210ENST00000413578 SPATA31E1Q6ZUB1 1445 aa18.36■□□□□ 0.53
LIMS2-210ENST00000413578 ADGRF5Q8IZF2 1346 aa18.36■□□□□ 0.53
LIMS2-210ENST00000413578 USP21Q9UK80 565 aa18.36■□□□□ 0.53
LIMS2-210ENST00000413578 NPHP3Q7Z494 1330 aa18.35■□□□□ 0.53
LIMS2-210ENST00000413578 TRPC5Q9UL62 973 aaPredicted RBP18.35■□□□□ 0.53
LIMS2-210ENST00000413578 FOXD1Q16676 465 aa18.33■□□□□ 0.52
LIMS2-210ENST00000413578 ESCO1Q5FWF5 840 aa18.33■□□□□ 0.52
LIMS2-210ENST00000413578 BCL9LQ86UU0 1499 aa18.33■□□□□ 0.52
LIMS2-210ENST00000413578 LRPPRCP42704 1394 aaKnown RBP18.32■□□□□ 0.52
LIMS2-210ENST00000413578 ATAD2Q6PL18 1390 aa18.32■□□□□ 0.52
LIMS2-210ENST00000413578 ABCC11Q96J66 1382 aa18.32■□□□□ 0.52
LIMS2-210ENST00000413578 CCDC144AA2RUR9 1427 aa18.32■□□□□ 0.52
LIMS2-210ENST00000413578 SRCAPQ6ZRS2 3230 aa18.31■□□□□ 0.52
LIMS2-210ENST00000413578 ANKRD30BQ9BXX2 1392 aa18.3■□□□□ 0.52
LIMS2-210ENST00000413578 FOXO3O43524 673 aa18.3■□□□□ 0.52
LIMS2-210ENST00000413578 WAPLQ7Z5K2 1190 aa18.3■□□□□ 0.52
LIMS2-210ENST00000413578 PIK3C2GO75747 1445 aa18.3■□□□□ 0.52
LIMS2-210ENST00000413578 PLEKHH1Q9ULM0 1364 aa18.3■□□□□ 0.52
LIMS2-210ENST00000413578 XPCQ01831 940 aaPredicted RBP18.27■□□□□ 0.52
LIMS2-210ENST00000413578 STK26Q9P289 416 aa18.26■□□□□ 0.51
LIMS2-210ENST00000413578 IFT172Q9UG01 1749 aa18.26■□□□□ 0.51
LIMS2-210ENST00000413578 RGL3Q3MIN7 710 aa18.25■□□□□ 0.51
LIMS2-210ENST00000413578 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
LIMS2-210ENST00000413578 MPHOSPH9Q99550 1183 aa18.25■□□□□ 0.51
LIMS2-210ENST00000413578 KNDC1Q76NI1 1749 aa18.25■□□□□ 0.51
LIMS2-210ENST00000413578 YTHDC2Q9H6S0 1430 aaKnown RBP18.24■□□□□ 0.51
LIMS2-210ENST00000413578 SLIT2O94813 1529 aa18.24■□□□□ 0.51
LIMS2-210ENST00000413578 NUTM2FA1L443 756 aa18.24■□□□□ 0.51
LIMS2-210ENST00000413578 SPATA31A3Q5VYP0 1347 aa18.23■□□□□ 0.51
LIMS2-210ENST00000413578 EP400Q96L91 3159 aa18.23■□□□□ 0.51
LIMS2-210ENST00000413578 SIRT1Q96EB6 747 aa18.23■□□□□ 0.51
LIMS2-210ENST00000413578 GJD4Q96KN9 370 aaPredicted RBP18.23■□□□□ 0.51
LIMS2-210ENST00000413578 NRXN1Q9ULB1 1477 aa18.22■□□□□ 0.51
LIMS2-210ENST00000413578 FMN2Q9NZ56 1722 aa18.21■□□□□ 0.51
LIMS2-210ENST00000413578 MARF1Q9Y4F3 1742 aaKnown RBP18.21■□□□□ 0.51
LIMS2-210ENST00000413578 UNC5CLQ8IV45 518 aa18.2■□□□□ 0.5
LIMS2-210ENST00000413578 C14orf93Q9H972 538 aaKnown RBP18.2■□□□□ 0.5
LIMS2-210ENST00000413578 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.2■□□□□ 0.5
LIMS2-210ENST00000413578 KIF1AQ12756 1690 aa18.19■□□□□ 0.5
LIMS2-210ENST00000413578 GLI3P10071 1580 aa18.19■□□□□ 0.5
LIMS2-210ENST00000413578 CCDC125Q86Z20 511 aa18.19■□□□□ 0.5
LIMS2-210ENST00000413578 RALGAPBQ86X10 1494 aa18.19■□□□□ 0.5
LIMS2-210ENST00000413578 USP32Q8NFA0 1604 aa18.17■□□□□ 0.5
LIMS2-210ENST00000413578 KRT28Q7Z3Y7 464 aa18.17■□□□□ 0.5
LIMS2-210ENST00000413578 TNS3Q68CZ2 1445 aa18.16■□□□□ 0.5
LIMS2-210ENST00000413578 CFAP70Q5T0N1 1121 aa18.15■□□□□ 0.5
LIMS2-210ENST00000413578 PHF8Q9UPP1 1060 aa18.15■□□□□ 0.5
LIMS2-210ENST00000413578 ZRANB1Q9UGI0 708 aa18.14■□□□□ 0.49
LIMS2-210ENST00000413578 SBNO1A3KN83 1393 aa18.14■□□□□ 0.49
LIMS2-210ENST00000413578 DHX57Q6P158 1386 aaKnown RBP18.13■□□□□ 0.49
LIMS2-210ENST00000413578 VPS72Q15906 364 aa18.12■□□□□ 0.49
LIMS2-210ENST00000413578 BLMP54132 1417 aaPredicted RBP18.12■□□□□ 0.49
LIMS2-210ENST00000413578 DLC1Q96QB1 1528 aa18.12■□□□□ 0.49
LIMS2-210ENST00000413578 ONECUT3O60422 494 aaPredicted RBP18.11■□□□□ 0.49
LIMS2-210ENST00000413578 PRAM1Q96QH2 718 aa18.11■□□□□ 0.49
LIMS2-210ENST00000413578 ACIN1Q9UKV3 1341 aaKnown RBP18.11■□□□□ 0.49
LIMS2-210ENST00000413578 ANKARQ7Z5J8 1434 aa18.11■□□□□ 0.49
LIMS2-210ENST00000413578 PSME1Q06323 249 aa18.1■□□□□ 0.49
LIMS2-210ENST00000413578 CABLES1Q8TDN4 633 aa18.1■□□□□ 0.49
LIMS2-210ENST00000413578 ADGRB1O14514 1584 aa18.09■□□□□ 0.49
LIMS2-210ENST00000413578 ARHGEF10O15013 1369 aa18.09■□□□□ 0.49
LIMS2-210ENST00000413578 SEPT12Q8IYM1 358 aa18.09■□□□□ 0.49
LIMS2-210ENST00000413578 ADGRB2O60241 1585 aa18.08■□□□□ 0.49
LIMS2-210ENST00000413578 ABCA3Q99758 1704 aa18.06■□□□□ 0.48
LIMS2-210ENST00000413578 SAFB2Q14151 953 aaKnown RBP eCLIP18.06■□□□□ 0.48
LIMS2-210ENST00000413578 NWD2Q9ULI1 1742 aa18.06■□□□□ 0.48
LIMS2-210ENST00000413578 RGPD8O14715 1765 aaPredicted RBP18.05■□□□□ 0.48
LIMS2-210ENST00000413578 FAM83GA6ND36 823 aa18.05■□□□□ 0.48
LIMS2-210ENST00000413578 PLCH1Q4KWH8 1693 aa18.05■□□□□ 0.48
LIMS2-210ENST00000413578 HAP1P54257 671 aaPredicted RBP18.04■□□□□ 0.48
LIMS2-210ENST00000413578 DEFB132Q7Z7B7 95 aa18.04■□□□□ 0.48
LIMS2-210ENST00000413578 PMFBP1Q8TBY8 1022 aa18.04■□□□□ 0.48
LIMS2-210ENST00000413578 PRR36Q9H6K5 1346 aa18.03■□□□□ 0.48
LIMS2-210ENST00000413578 BRWD3Q6RI45 1802 aa18.02■□□□□ 0.48
LIMS2-210ENST00000413578 TRPM3Q9HCF6 1732 aaPredicted RBP18.02■□□□□ 0.48
LIMS2-210ENST00000413578 POGKQ9P215 609 aa18.02■□□□□ 0.48
LIMS2-210ENST00000413578 LMOD2Q6P5Q4 547 aa18.01■□□□□ 0.47
LIMS2-210ENST00000413578 KRT27Q7Z3Y8 459 aa18.01■□□□□ 0.47
LIMS2-210ENST00000413578 RAB3GAP2Q9H2M9 1393 aa18.01■□□□□ 0.47
LIMS2-210ENST00000413578 TULP4Q9NRJ4 1543 aa18■□□□□ 0.47
LIMS2-210ENST00000413578 NRAPQ86VF7 1730 aa17.99■□□□□ 0.47
LIMS2-210ENST00000413578 PLEKHG5O94827 1062 aa17.99■□□□□ 0.47
LIMS2-210ENST00000413578 HIRIP3Q9BW71 556 aaPredicted RBP17.99■□□□□ 0.47
LIMS2-210ENST00000413578 TRAK1Q9UPV9 953 aa17.99■□□□□ 0.47
LIMS2-210ENST00000413578 ALS2Q96Q42 1657 aa17.99■□□□□ 0.47
LIMS2-210ENST00000413578 CCDC9Q9Y3X0 531 aaKnown RBP17.98■□□□□ 0.47
LIMS2-210ENST00000413578 EIF3AQ14152 1382 aaKnown RBP17.98■□□□□ 0.47
LIMS2-210ENST00000413578 GPRASP1Q5JY77 1395 aa17.97■□□□□ 0.47
LIMS2-210ENST00000413578 WASLO00401 505 aaPredicted RBP17.97■□□□□ 0.47
LIMS2-210ENST00000413578 SF3B2Q13435 895 aaKnown RBP17.97■□□□□ 0.47
LIMS2-210ENST00000413578 BTG4Q9NY30 223 aa17.97■□□□□ 0.47
LIMS2-210ENST00000413578 MINK1Q8N4C8 1332 aaPredicted RBP17.97■□□□□ 0.47
LIMS2-210ENST00000413578 FAM98CQ17RN3 349 aaKnown RBP17.95■□□□□ 0.46
LIMS2-210ENST00000413578 STAC3Q96MF2 364 aa17.95■□□□□ 0.46
LIMS2-210ENST00000413578 SPATA31A5Q5VU36 1347 aa17.95■□□□□ 0.46
LIMS2-210ENST00000413578 SPATA31A7Q8IWB4 1347 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms