RNA–Protein interactions for RNA: ENST00000410731.1

RNU4-55P-201, Transcript of RNA, U4 small nuclear 55, pseudogene, humanhuman

BASIC

Gene RNU4-55P, Length 137 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-55P-201ENST00000410731 NDUFV2P19404 249 aa8.23□□□□□ -1.09
RNU4-55P-201ENST00000410731 MMP16P51512 607 aa8.23□□□□□ -1.09
RNU4-55P-201ENST00000410731 EMID1Q96A84 441 aaPredicted RBP8.23□□□□□ -1.09
RNU4-55P-201ENST00000410731 DXOO77932 396 aaKnown RBP8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 SLC19A1P41440 591 aa8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 PLA2G2CQ5R387 149 aa8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 RSBN1LQ6PCB5 846 aaPredicted RBP8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 RETREG3Q86VR2 466 aa8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 IRX2Q9BZI1 471 aaPredicted RBP8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 FCF1Q9Y324 198 aaKnown RBP8.22□□□□□ -1.09
RNU4-55P-201ENST00000410731 SPTLC1O15269 473 aa8.21□□□□□ -1.1
RNU4-55P-201ENST00000410731 KDM4CQ9H3R0 1056 aa8.21□□□□□ -1.1
RNU4-55P-201ENST00000410731 C6orf229H3BNL8 230 aa8.2□□□□□ -1.1
RNU4-55P-201ENST00000410731 SYMPKQ92797 1274 aaKnown RBP8.2□□□□□ -1.1
RNU4-55P-201ENST00000410731 GPBP1L1Q9HC44 474 aaPredicted RBP8.2□□□□□ -1.1
RNU4-55P-201ENST00000410731 JUNDP17535 347 aa8.19□□□□□ -1.1
RNU4-55P-201ENST00000410731 TPRNQ4KMQ1 711 aa8.19□□□□□ -1.1
RNU4-55P-201ENST00000410731 MYSM1Q5VVJ2 828 aa8.19□□□□□ -1.1
RNU4-55P-201ENST00000410731 SPRYD7Q5W111 196 aa8.19□□□□□ -1.1
RNU4-55P-201ENST00000410731 LIAT1Q6ZQX7 453 aa8.19□□□□□ -1.1
RNU4-55P-201ENST00000410731 SPDYE5A6NIY4 337 aa8.18□□□□□ -1.1
RNU4-55P-201ENST00000410731 RPIAP49247 311 aa8.18□□□□□ -1.1
RNU4-55P-201ENST00000410731 MTMR2Q13614 643 aa8.18□□□□□ -1.1
RNU4-55P-201ENST00000410731 RIC3Q7Z5B4 369 aa8.18□□□□□ -1.1
RNU4-55P-201ENST00000410731 TUSC1Q2TAM9 212 aa8.17□□□□□ -1.1
RNU4-55P-201ENST00000410731 PRPF38BQ5VTL8 546 aaKnown RBP8.16□□□□□ -1.1
RNU4-55P-201ENST00000410731 ZNF598Q86UK7 904 aaKnown RBP8.16□□□□□ -1.1
RNU4-55P-201ENST00000410731 DDRGK1Q96HY6 314 aa8.16□□□□□ -1.1
RNU4-55P-201ENST00000410731 RSPH6AQ9H0K4 717 aa8.16□□□□□ -1.1
RNU4-55P-201ENST00000410731 ZBTB3Q9H5J0 574 aa8.16□□□□□ -1.1
RNU4-55P-201ENST00000410731 LAPTM4AQ15012 233 aa8.15□□□□□ -1.1
RNU4-55P-201ENST00000410731 PRR7Q8TB68 274 aa8.15□□□□□ -1.1
RNU4-55P-201ENST00000410731 LIMD1Q9UGP4 676 aa8.15□□□□□ -1.1
RNU4-55P-201ENST00000410731 PCDHB15Q9Y5E8 787 aa8.15□□□□□ -1.1
RNU4-55P-201ENST00000410731 CLK2P49760 499 aaKnown RBP8.14□□□□□ -1.11
RNU4-55P-201ENST00000410731 ZNF697Q5TEC3 545 aa8.14□□□□□ -1.11
RNU4-55P-201ENST00000410731 DESI1Q6ICB0 168 aa8.14□□□□□ -1.11
RNU4-55P-201ENST00000410731 FAM117AQ9C073 453 aa8.14□□□□□ -1.11
RNU4-55P-201ENST00000410731 HRCP23327 699 aa8.13□□□□□ -1.11
RNU4-55P-201ENST00000410731 PLEKHG3A1L390 1219 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 NRG2O14511 850 aaPredicted RBP8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 ZBTB24O43167 697 aaPredicted RBP8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 GFRA3O60609 400 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 NEUROD2Q15784 382 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 PTPRNQ16849 979 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 SH3D19Q5HYK7 790 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 TRIM67Q6ZTA4 783 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 CABLES1Q8TDN4 633 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 NUDT12Q9BQG2 462 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 PDZRN3Q9UPQ7 1066 aa8.12□□□□□ -1.11
RNU4-55P-201ENST00000410731 CFAP99D6REC4 459 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 LILRB3O75022 631 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 CD2BP2O95400 341 aaKnown RBP8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 CCNYL3P0C7X3 344 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 PRR20EP86478 221 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 PRR20CP86479 221 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 PRR20DP86480 221 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 PRR20BP86481 221 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 PRR20AP86496 221 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 TRIM32Q13049 653 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 QPCTQ16769 361 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 CSPP1Q1MSJ5 1256 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 CCDC24Q8N4L8 307 aa8.11□□□□□ -1.11
RNU4-55P-201ENST00000410731 GDF9O60383 454 aa8.09□□□□□ -1.11
RNU4-55P-201ENST00000410731 BRPF1P55201 1214 aaPredicted RBP8.09□□□□□ -1.11
RNU4-55P-201ENST00000410731 SKIV2LQ15477 1246 aaKnown RBP8.09□□□□□ -1.11
RNU4-55P-201ENST00000410731 POLR3EQ9NVU0 708 aa8.09□□□□□ -1.11
RNU4-55P-201ENST00000410731 PKD2L1Q9P0L9 805 aa8.08□□□□□ -1.12
RNU4-55P-201ENST00000410731 NUTM2BA6NNL0 878 aaPredicted RBP8.07□□□□□ -1.12
RNU4-55P-201ENST00000410731 NUTM2EB1AL46 878 aaPredicted RBP8.07□□□□□ -1.12
RNU4-55P-201ENST00000410731 NUTM2DQ5VT03 806 aaPredicted RBP8.07□□□□□ -1.12
RNU4-55P-201ENST00000410731 LYPD8Q6UX82 237 aa8.07□□□□□ -1.12
RNU4-55P-201ENST00000410731 NUTM2AQ8IVF1 878 aaPredicted RBP8.07□□□□□ -1.12
RNU4-55P-201ENST00000410731 TNFRSF10AO00220 468 aa8.06□□□□□ -1.12
RNU4-55P-201ENST00000410731 Q6ZNB5 142 aa8.06□□□□□ -1.12
RNU4-55P-201ENST00000410731 EVA1BQ9NVM1 165 aa8.06□□□□□ -1.12
RNU4-55P-201ENST00000410731 WNT7BP56706 349 aa8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 KCNH2Q12809 1159 aa8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 FOXC1Q12948 553 aa8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 RTL5Q5HYW3 569 aaPredicted RBP8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 PTCRAQ6ISU1 281 aaPredicted RBP8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 HELBQ8NG08 1087 aaPredicted RBP8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 GOPCQ9HD26 462 aa8.05□□□□□ -1.12
RNU4-55P-201ENST00000410731 WNT7AO00755 349 aa8.04□□□□□ -1.12
RNU4-55P-201ENST00000410731 UNC93B1Q9H1C4 597 aa8.04□□□□□ -1.12
RNU4-55P-201ENST00000410731 F12P00748 615 aaPredicted RBP8.03□□□□□ -1.12
RNU4-55P-201ENST00000410731 PER1O15534 1290 aaPredicted RBP8.02□□□□□ -1.13
RNU4-55P-201ENST00000410731 SKOR1P84550 965 aa8.02□□□□□ -1.13
RNU4-55P-201ENST00000410731 PPP2R2DQ66LE6 453 aa8.02□□□□□ -1.13
RNU4-55P-201ENST00000410731 PROCA1Q8NCQ7 364 aaPredicted RBP8.02□□□□□ -1.13
RNU4-55P-201ENST00000410731 TSC1Q92574 1164 aa8.02□□□□□ -1.13
RNU4-55P-201ENST00000410731 PRKCSHP14314 528 aaPredicted RBP8.01□□□□□ -1.13
RNU4-55P-201ENST00000410731 IL27Q8NEV9 243 aa8.01□□□□□ -1.13
RNU4-55P-201ENST00000410731 TOR4AQ9NXH8 423 aa8.01□□□□□ -1.13
RNU4-55P-201ENST00000410731 DGAT1O75907 488 aa8□□□□□ -1.13
RNU4-55P-201ENST00000410731 CTHP32929 405 aa8□□□□□ -1.13
RNU4-55P-201ENST00000410731 RC3H1Q5TC82 1133 aaKnown RBP8□□□□□ -1.13
RNU4-55P-201ENST00000410731 FBXO31Q5XUX0 539 aaPredicted RBP8□□□□□ -1.13
RNU4-55P-201ENST00000410731 CYP4X1Q8N118 509 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms