RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 NUTM2FA1L443 756 aa5.07□□□□□ -1.6
RTN4-208ENST00000404909 KCNA6P17658 529 aa5.07□□□□□ -1.6
RTN4-208ENST00000404909 RBM33Q96EV2 1170 aaKnown RBP5.07□□□□□ -1.6
RTN4-208ENST00000404909 PTPRUQ92729 1446 aa5.06□□□□□ -1.6
RTN4-208ENST00000404909 ZNF142P52746 1687 aaPredicted RBP5.06□□□□□ -1.6
RTN4-208ENST00000404909 MED14O60244 1454 aa5.06□□□□□ -1.6
RTN4-208ENST00000404909 SETD1AO15047 1707 aaKnown RBP5.06□□□□□ -1.6
RTN4-208ENST00000404909 PER1O15534 1290 aaPredicted RBP5.06□□□□□ -1.6
RTN4-208ENST00000404909 NPHP4O75161 1426 aaPredicted RBP5.06□□□□□ -1.6
RTN4-208ENST00000404909 TULP4Q9NRJ4 1543 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 WASLO00401 505 aaPredicted RBP5.05□□□□□ -1.6
RTN4-208ENST00000404909 CABP1Q9NZU7 370 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 CCER2I3L3R5 266 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 C14orf37Q86TY3 774 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 SIRT1Q96EB6 747 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 KTN1Q86UP2 1357 aaKnown RBP5.05□□□□□ -1.6
RTN4-208ENST00000404909 TECPR2O15040 1411 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 FAM135BQ49AJ0 1406 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 DLC1Q96QB1 1528 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 CCDC184Q52MB2 194 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 CARD14Q9BXL6 1004 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 MRS2Q9HD23 443 aa5.05□□□□□ -1.6
RTN4-208ENST00000404909 ATAD2Q6PL18 1390 aa5.04□□□□□ -1.6
RTN4-208ENST00000404909 PUS7Q96PZ0 661 aaKnown RBP5.04□□□□□ -1.6
RTN4-208ENST00000404909 RALBP1Q15311 655 aa5.04□□□□□ -1.6
RTN4-208ENST00000404909 NUDT16Q96DE0 195 aaKnown RBP5.04□□□□□ -1.6
RTN4-208ENST00000404909 PIK3R4Q99570 1358 aa5.04□□□□□ -1.6
RTN4-208ENST00000404909 AMER1Q5JTC6 1135 aaPredicted RBP5.04□□□□□ -1.6
RTN4-208ENST00000404909 TERF2IPQ9NYB0 399 aa5.04□□□□□ -1.6
RTN4-208ENST00000404909 DIP2AQ14689 1571 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 TNNT2P45379 298 aaPredicted RBP5.03□□□□□ -1.6
RTN4-208ENST00000404909 FAM9BQ8IZU0 186 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 CPS1P31327 1500 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 NSD3Q9BZ95 1437 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 HDGFL2Q7Z4V5 671 aaPredicted RBP5.03□□□□□ -1.6
RTN4-208ENST00000404909 CCDC61Q9Y6R9 512 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 PTCH1Q13635 1447 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 PROSER2Q86WR7 435 aaPredicted RBP5.03□□□□□ -1.6
RTN4-208ENST00000404909 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.03□□□□□ -1.61e-7■■■□□ 14.8
RTN4-208ENST00000404909 LMTK3Q96Q04 1460 aa5.03□□□□□ -1.6
RTN4-208ENST00000404909 A0A1W2PP64 1363 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 ANKRD36BQ8N2N9 1353 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 MYBBP1AQ9BQG0 1328 aaKnown RBP5.02□□□□□ -1.61
RTN4-208ENST00000404909 MYOM1P52179 1685 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 CGNL1Q0VF96 1302 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 PRR36Q9H6K5 1346 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 KNDC1Q76NI1 1749 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 PARD3Q8TEW0 1356 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 NINLQ9Y2I6 1382 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 PPIP5K1Q6PFW1 1433 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 MORC1Q86VD1 984 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 PMFBP1Q8TBY8 1022 aa5.02□□□□□ -1.61
RTN4-208ENST00000404909 NLRP13Q86W25 1043 aa5.01□□□□□ -1.61
RTN4-208ENST00000404909 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.01□□□□□ -1.61
RTN4-208ENST00000404909 GGNBP2Q9H3C7 697 aa5.01□□□□□ -1.61
RTN4-208ENST00000404909 PPP2R1AP30153 589 aa5□□□□□ -1.61
RTN4-208ENST00000404909 NGDNQ8NEJ9 315 aaKnown RBP5□□□□□ -1.61
RTN4-208ENST00000404909 XRN1Q8IZH2 1706 aaKnown RBP5□□□□□ -1.61
RTN4-208ENST00000404909 SENP3-EIF4A1A0A087X0R7 540 aa5□□□□□ -1.61
RTN4-208ENST00000404909 CENPBP07199 599 aaPredicted RBP5□□□□□ -1.61
RTN4-208ENST00000404909 ACEP12821 1306 aa5□□□□□ -1.61
RTN4-208ENST00000404909 CHD2O14647 1828 aaKnown RBP5□□□□□ -1.61
RTN4-208ENST00000404909 ATP7BP35670 1465 aa5□□□□□ -1.61
RTN4-208ENST00000404909 CD163L1Q9NR16 1453 aa5□□□□□ -1.61
RTN4-208ENST00000404909 FYB1O15117 783 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 HNRNPUQ00839 825 aaKnown RBP eCLIP4.99□□□□□ -1.613e-6■□□□□ 10
RTN4-208ENST00000404909 ESCO1Q5FWF5 840 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 BRD4O60885 1362 aaPredicted RBP4.99□□□□□ -1.61
RTN4-208ENST00000404909 NPC1L1Q9UHC9 1359 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 ZNF335Q9H4Z2 1342 aaPredicted RBP4.99□□□□□ -1.61
RTN4-208ENST00000404909 TMEM94Q12767 1356 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 NME9Q86XW9 330 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 ZNF692Q9BU19 519 aaPredicted RBP4.99□□□□□ -1.61
RTN4-208ENST00000404909 PLEKHG3A1L390 1219 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 ATF3P18847 181 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 PNISRQ8TF01 805 aaKnown RBP4.99□□□□□ -1.61
RTN4-208ENST00000404909 C19orf44Q9H6X5 657 aa4.99□□□□□ -1.61
RTN4-208ENST00000404909 ADGRL3Q9HAR2 1447 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 PAK3O75914 559 aaPredicted RBP4.98□□□□□ -1.61
RTN4-208ENST00000404909 ZRANB1Q9UGI0 708 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 ADGRB2O60241 1585 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 PPM1GO15355 546 aaPredicted RBP4.98□□□□□ -1.61
RTN4-208ENST00000404909 SOX12O15370 315 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 FBLN1P23142 703 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 DMRT2Q9Y5R5 561 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 CPSF1Q10570 1443 aaKnown RBP4.98□□□□□ -1.61
RTN4-208ENST00000404909 MTHFSP49914 203 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 ORAI2Q96SN7 254 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 PHF8Q9UPP1 1060 aa4.98□□□□□ -1.61
RTN4-208ENST00000404909 STRCQ7RTU9 1775 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 WDR43Q15061 677 aaKnown RBP eCLIP4.97□□□□□ -1.61
RTN4-208ENST00000404909 COG3Q96JB2 828 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 NSD2O96028 1365 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 EDC4Q6P2E9 1401 aaKnown RBP4.97□□□□□ -1.61
RTN4-208ENST00000404909 FOXO3O43524 673 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 PLEKHG5O94827 1062 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 XPCQ01831 940 aaPredicted RBP4.97□□□□□ -1.61
RTN4-208ENST00000404909 PSME1Q06323 249 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 NUTM2GQ5VZR2 741 aa4.97□□□□□ -1.61
RTN4-208ENST00000404909 TTC21BQ7Z4L5 1316 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms