RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 PANK1Q8TE04 598 aa13.43□□□□□ -0.26
CCDC40-204ENST00000397545 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-204ENST00000397545 CGNL1Q0VF96 1302 aa13.43□□□□□ -0.26
CCDC40-204ENST00000397545 CLASP1Q7Z460 1538 aa13.43□□□□□ -0.26
CCDC40-204ENST00000397545 UHRF1BP1LA0JNW5 1464 aa13.42□□□□□ -0.26
CCDC40-204ENST00000397545 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
CCDC40-204ENST00000397545 ADGRF5Q8IZF2 1346 aa13.42□□□□□ -0.26
CCDC40-204ENST00000397545 ZKSCAN2Q63HK3 967 aa13.42□□□□□ -0.26
CCDC40-204ENST00000397545 MAST1Q9Y2H9 1570 aa13.42□□□□□ -0.26
CCDC40-204ENST00000397545 DDX49Q9Y6V7 483 aaKnown RBP13.41□□□□□ -0.26
CCDC40-204ENST00000397545 EIF3AQ14152 1382 aaKnown RBP13.41□□□□□ -0.26
CCDC40-204ENST00000397545 TULP1O00294 542 aaPredicted RBP13.41□□□□□ -0.26
CCDC40-204ENST00000397545 TMEM132EQ6IEE7 984 aa13.41□□□□□ -0.26
CCDC40-204ENST00000397545 UNC13BO14795 1591 aa13.4□□□□□ -0.26
CCDC40-204ENST00000397545 KIAA2012Q0VF49 1180 aa13.4□□□□□ -0.26
CCDC40-204ENST00000397545 IL27Q8NEV9 243 aa13.4□□□□□ -0.26
CCDC40-204ENST00000397545 PLXNC1O60486 1568 aa13.4□□□□□ -0.26
CCDC40-204ENST00000397545 GPRASP1Q5JY77 1395 aa13.4□□□□□ -0.26
CCDC40-204ENST00000397545 STK31Q9BXU1 1019 aa13.39□□□□□ -0.27
CCDC40-204ENST00000397545 IQGAP3Q86VI3 1631 aa13.39□□□□□ -0.27
CCDC40-204ENST00000397545 PARD3Q8TEW0 1356 aa13.39□□□□□ -0.27
CCDC40-204ENST00000397545 BRPF3Q9ULD4 1205 aa13.39□□□□□ -0.27
CCDC40-204ENST00000397545 COL17A1Q9UMD9 1497 aaPredicted RBP13.39□□□□□ -0.27
CCDC40-204ENST00000397545 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
CCDC40-204ENST00000397545 LTV1Q96GA3 475 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-204ENST00000397545 CFAP44Q96MT7 982 aa13.38□□□□□ -0.27
CCDC40-204ENST00000397545 POLR1AO95602 1720 aaPredicted RBP13.38□□□□□ -0.27
CCDC40-204ENST00000397545 MSH5O43196 834 aa13.38□□□□□ -0.27
CCDC40-204ENST00000397545 TRPM1Q7Z4N2 1603 aa13.38□□□□□ -0.27
CCDC40-204ENST00000397545 ATP10AO60312 1499 aa13.38□□□□□ -0.27
CCDC40-204ENST00000397545 PPP2R1AP30153 589 aa13.37□□□□□ -0.27
CCDC40-204ENST00000397545 LNPKQ9C0E8 428 aa13.37□□□□□ -0.27
CCDC40-204ENST00000397545 RTEL1-TNFRSF6BF6WH68 1400 aa13.37□□□□□ -0.27
CCDC40-204ENST00000397545 CD109Q6YHK3 1445 aa13.37□□□□□ -0.27
CCDC40-204ENST00000397545 ATP7AQ04656 1500 aa13.37□□□□□ -0.27
CCDC40-204ENST00000397545 FRAT2O75474 233 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-204ENST00000397545 AEBP2Q6ZN18 517 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-204ENST00000397545 SKAP1Q86WV1 359 aa13.36□□□□□ -0.27
CCDC40-204ENST00000397545 MINK1Q8N4C8 1332 aaPredicted RBP13.36□□□□□ -0.27
CCDC40-204ENST00000397545 UGGT1Q9NYU2 1555 aa13.36□□□□□ -0.27
CCDC40-204ENST00000397545 NRDCO43847 1150 aa13.36□□□□□ -0.27
CCDC40-204ENST00000397545 ZFYVE16Q7Z3T8 1539 aa13.36□□□□□ -0.27
CCDC40-204ENST00000397545 HMMRO75330 724 aa13.35□□□□□ -0.27
CCDC40-204ENST00000397545 HSP90AA2PQ14568 343 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-204ENST00000397545 DZIP1LQ8IYY4 767 aaKnown RBP13.35□□□□□ -0.27
CCDC40-204ENST00000397545 ZNF330Q9Y3S2 320 aaPredicted RBP13.35□□□□□ -0.27
CCDC40-204ENST00000397545 LRPPRCP42704 1394 aaKnown RBP13.35□□□□□ -0.27
CCDC40-204ENST00000397545 RILPL2Q969X0 211 aa13.35□□□□□ -0.27
CCDC40-204ENST00000397545 DDX11L8A8MPP1 907 aa13.34□□□□□ -0.27
CCDC40-204ENST00000397545 GOLGA6L6A8MZA4 724 aa13.34□□□□□ -0.27
CCDC40-204ENST00000397545 ST18O60284 1047 aa13.34□□□□□ -0.27
CCDC40-204ENST00000397545 PTMSP20962 102 aa13.34□□□□□ -0.27
CCDC40-204ENST00000397545 SYAP1Q96A49 352 aaPredicted RBP13.33□□□□□ -0.28
CCDC40-204ENST00000397545 HDGFP51858 240 aaKnown RBP13.33□□□□□ -0.28
CCDC40-204ENST00000397545 SCAF11Q99590 1463 aaKnown RBP13.33□□□□□ -0.28
CCDC40-204ENST00000397545 RIPK4P57078 832 aa13.33□□□□□ -0.28
CCDC40-204ENST00000397545 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
CCDC40-204ENST00000397545 CFAP65Q6ZU64 1925 aaKnown RBP13.32□□□□□ -0.28
CCDC40-204ENST00000397545 ANO8Q9HCE9 1232 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-204ENST00000397545 PRDM15P57071 1507 aaPredicted RBP13.32□□□□□ -0.28
CCDC40-204ENST00000397545 EIF2AK4Q9P2K8 1649 aaKnown RBP13.32□□□□□ -0.28
CCDC40-204ENST00000397545 BCAR3O75815 825 aa13.32□□□□□ -0.28
CCDC40-204ENST00000397545 CHMP5Q9NZZ3 219 aa13.32□□□□□ -0.28
CCDC40-204ENST00000397545 RSPH6AQ9H0K4 717 aa13.31□□□□□ -0.28
CCDC40-204ENST00000397545 BACH2Q9BYV9 841 aa13.31□□□□□ -0.28
CCDC40-204ENST00000397545 MAGI2Q86UL8 1455 aa13.31□□□□□ -0.28
CCDC40-204ENST00000397545 E9PCH4 1651 aa13.31□□□□□ -0.28
CCDC40-204ENST00000397545 NOS1P29475 1434 aa13.31□□□□□ -0.28
CCDC40-204ENST00000397545 NECTIN2Q92692 538 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 STAC3Q96MF2 364 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 C22orf23Q9BZE7 217 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 SLC12A5Q9H2X9 1139 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 GGNBP2Q9H3C7 697 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 DDX19BQ9UMR2 479 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 AMPHP49418 695 aa13.3□□□□□ -0.28
CCDC40-204ENST00000397545 NGDNQ8NEJ9 315 aaKnown RBP13.3□□□□□ -0.28
CCDC40-204ENST00000397545 TCP11L2Q8N4U5 519 aa13.29□□□□□ -0.28
CCDC40-204ENST00000397545 CHMP3Q9Y3E7 222 aa13.29□□□□□ -0.28
CCDC40-204ENST00000397545 CLTCL1P53675 1640 aa13.29□□□□□ -0.28
CCDC40-204ENST00000397545 RUNDC1Q96C34 613 aa13.29□□□□□ -0.28
CCDC40-204ENST00000397545 HMOX1P09601 288 aa13.28□□□□□ -0.28
CCDC40-204ENST00000397545 MTHFSP49914 203 aa13.28□□□□□ -0.28
CCDC40-204ENST00000397545 CCDC9Q9Y3X0 531 aaKnown RBP13.28□□□□□ -0.28
CCDC40-204ENST00000397545 TRPM2O94759 1503 aa13.28□□□□□ -0.28
CCDC40-204ENST00000397545 PTPRTO14522 1441 aa13.28□□□□□ -0.28
CCDC40-204ENST00000397545 GNL2Q13823 731 aaKnown RBP13.28□□□□□ -0.28
CCDC40-204ENST00000397545 LMOD3Q0VAK6 560 aa13.27□□□□□ -0.28
CCDC40-204ENST00000397545 ZNF518AQ6AHZ1 1483 aa13.27□□□□□ -0.28
CCDC40-204ENST00000397545 EVC2Q86UK5 1308 aa13.27□□□□□ -0.28
CCDC40-204ENST00000397545 DIAPH1O60610 1272 aaKnown RBP13.27□□□□□ -0.29
CCDC40-204ENST00000397545 CARD14Q9BXL6 1004 aa13.26□□□□□ -0.29
CCDC40-204ENST00000397545 HSP90B1P14625 803 aaKnown RBP13.25□□□□□ -0.29
CCDC40-204ENST00000397545 VGFO15240 615 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-204ENST00000397545 NPHP1O15259 732 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 RNF123Q5XPI4 1314 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 CSB-PGBD3P0DP91 1061 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 CABP2Q9NPB3 220 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 PDZRN3Q9UPQ7 1066 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 C20orf194Q5TEA3 1177 aa13.25□□□□□ -0.29
CCDC40-204ENST00000397545 EID1Q9Y6B2 187 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms