RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 ST20-MTHFSA0A0A6YYL1 179 aa20.88■□□□□ 0.93
SCAF11-204ENST00000395454 RBM33Q96EV2 1170 aaKnown RBP20.88■□□□□ 0.93
SCAF11-204ENST00000395454 PLEKHH1Q9ULM0 1364 aa20.87■□□□□ 0.93
SCAF11-204ENST00000395454 NKTRP30414 1462 aaKnown RBP20.87■□□□□ 0.93
SCAF11-204ENST00000395454 CENPJQ9HC77 1338 aaPredicted RBP20.87■□□□□ 0.93
SCAF11-204ENST00000395454 FAM135BQ49AJ0 1406 aa20.86■□□□□ 0.93
SCAF11-204ENST00000395454 PROSER2Q86WR7 435 aaPredicted RBP20.86■□□□□ 0.93
SCAF11-204ENST00000395454 SIRT1Q96EB6 747 aa20.85■□□□□ 0.93
SCAF11-204ENST00000395454 QRICH2Q9H0J4 1663 aa20.83■□□□□ 0.92
SCAF11-204ENST00000395454 C14orf37Q86TY3 774 aa20.82■□□□□ 0.92
SCAF11-204ENST00000395454 MINK1Q8N4C8 1332 aaPredicted RBP20.81■□□□□ 0.92
SCAF11-204ENST00000395454 TMEM94Q12767 1356 aa20.81■□□□□ 0.92
SCAF11-204ENST00000395454 TESK2Q96S53 571 aa20.8■□□□□ 0.92
SCAF11-204ENST00000395454 SCAF1Q9H7N4 1312 aaKnown RBP20.8■□□□□ 0.92
SCAF11-204ENST00000395454 PRKRIP1Q9H875 184 aaPredicted RBP20.79■□□□□ 0.92
SCAF11-204ENST00000395454 LRRC7Q96NW7 1537 aa20.79■□□□□ 0.92
SCAF11-204ENST00000395454 LTBP4Q8N2S1 1624 aa20.78■□□□□ 0.92
SCAF11-204ENST00000395454 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.78■□□□□ 0.92
SCAF11-204ENST00000395454 SBNO2Q9Y2G9 1366 aa20.76■□□□□ 0.91
SCAF11-204ENST00000395454 NALCNQ8IZF0 1738 aa20.76■□□□□ 0.91
SCAF11-204ENST00000395454 ADGRL3Q9HAR2 1447 aa20.74■□□□□ 0.91
SCAF11-204ENST00000395454 XIRP1Q702N8 1843 aaKnown RBP20.74■□□□□ 0.91
SCAF11-204ENST00000395454 NCOA3Q9Y6Q9 1424 aa20.73■□□□□ 0.91
SCAF11-204ENST00000395454 TMF1P82094 1093 aa20.72■□□□□ 0.91
SCAF11-204ENST00000395454 SLC24A1O60721 1099 aa20.72■□□□□ 0.91
SCAF11-204ENST00000395454 C19orf44Q9H6X5 657 aa20.72■□□□□ 0.91
SCAF11-204ENST00000395454 DISP3Q9P2K9 1392 aa20.72■□□□□ 0.91
SCAF11-204ENST00000395454 EVC2Q86UK5 1308 aa20.71■□□□□ 0.91
SCAF11-204ENST00000395454 MSH6P52701 1360 aa20.71■□□□□ 0.91
SCAF11-204ENST00000395454 ADGRB2O60241 1585 aa20.7■□□□□ 0.9
SCAF11-204ENST00000395454 TULP4Q9NRJ4 1543 aa20.7■□□□□ 0.9
SCAF11-204ENST00000395454 WASLO00401 505 aaPredicted RBP20.7■□□□□ 0.9
SCAF11-204ENST00000395454 SRPK2P78362 688 aaKnown RBP20.7■□□□□ 0.9
SCAF11-204ENST00000395454 KTN1Q86UP2 1357 aaKnown RBP20.7■□□□□ 0.9
SCAF11-204ENST00000395454 CDK19Q9BWU1 502 aa20.69■□□□□ 0.9
SCAF11-204ENST00000395454 NUTM2FA1L443 756 aa20.68■□□□□ 0.9
SCAF11-204ENST00000395454 POLR3GLQ9BT43 218 aa20.68■□□□□ 0.9
SCAF11-204ENST00000395454 CABP2Q9NPB3 220 aa20.68■□□□□ 0.9
SCAF11-204ENST00000395454 CDC42BPGQ6DT37 1551 aa20.68■□□□□ 0.9
SCAF11-204ENST00000395454 ATF3P18847 181 aa20.67■□□□□ 0.9
SCAF11-204ENST00000395454 CDCA8Q53HL2 280 aa20.65■□□□□ 0.9
SCAF11-204ENST00000395454 CADPS2Q86UW7 1296 aa20.65■□□□□ 0.9
SCAF11-204ENST00000395454 DCCP43146 1447 aa20.65■□□□□ 0.9
SCAF11-204ENST00000395454 MYOM1P52179 1685 aa20.63■□□□□ 0.89
SCAF11-204ENST00000395454 GTF3C3Q9Y5Q9 886 aa20.63■□□□□ 0.89
SCAF11-204ENST00000395454 FMN2Q9NZ56 1722 aa20.62■□□□□ 0.89
SCAF11-204ENST00000395454 CERKQ8TCT0 537 aa20.61■□□□□ 0.89
SCAF11-204ENST00000395454 NUDT16Q96DE0 195 aaKnown RBP20.61■□□□□ 0.89
SCAF11-204ENST00000395454 PER1O15534 1290 aaPredicted RBP20.6■□□□□ 0.89
SCAF11-204ENST00000395454 ATP7BP35670 1465 aa20.59■□□□□ 0.89
SCAF11-204ENST00000395454 ATAD2Q6PL18 1390 aa20.59■□□□□ 0.89
SCAF11-204ENST00000395454 PRR36Q9H6K5 1346 aa20.59■□□□□ 0.89
SCAF11-204ENST00000395454 RGPD8O14715 1765 aaPredicted RBP20.59■□□□□ 0.89
SCAF11-204ENST00000395454 CCDC184Q52MB2 194 aa20.59■□□□□ 0.89
SCAF11-204ENST00000395454 USP32Q8NFA0 1604 aa20.58■□□□□ 0.88
SCAF11-204ENST00000395454 TMC1Q8TDI8 760 aa20.58■□□□□ 0.88
SCAF11-204ENST00000395454 MST1RQ04912 1400 aa20.58■□□□□ 0.88
SCAF11-204ENST00000395454 PARD3Q8TEW0 1356 aa20.57■□□□□ 0.88
SCAF11-204ENST00000395454 PUS7Q96PZ0 661 aaKnown RBP20.57■□□□□ 0.88
SCAF11-204ENST00000395454 CCDC61Q9Y6R9 512 aa20.57■□□□□ 0.88
SCAF11-204ENST00000395454 ANKARQ7Z5J8 1434 aa20.57■□□□□ 0.88
SCAF11-204ENST00000395454 C1orf167Q5SNV9 1468 aa20.56■□□□□ 0.88
SCAF11-204ENST00000395454 RALBP1Q15311 655 aa20.56■□□□□ 0.88
SCAF11-204ENST00000395454 SLAIN2Q9P270 581 aa20.56■□□□□ 0.88
SCAF11-204ENST00000395454 IQSEC2Q5JU85 1478 aa20.55■□□□□ 0.88
SCAF11-204ENST00000395454 ESCO1Q5FWF5 840 aa20.55■□□□□ 0.88
SCAF11-204ENST00000395454 PPIP5K1Q6PFW1 1433 aa20.55■□□□□ 0.88
SCAF11-204ENST00000395454 CABP1Q9NZU7 370 aa20.55■□□□□ 0.88
SCAF11-204ENST00000395454 ITSN1Q15811 1721 aa20.54■□□□□ 0.88
SCAF11-204ENST00000395454 MRS2Q9HD23 443 aa20.54■□□□□ 0.88
SCAF11-204ENST00000395454 TOM1O60784 492 aa20.53■□□□□ 0.88
SCAF11-204ENST00000395454 ORAI2Q96SN7 254 aa20.53■□□□□ 0.88
SCAF11-204ENST00000395454 SLC12A5Q9H2X9 1139 aa20.53■□□□□ 0.88
SCAF11-204ENST00000395454 PMFBP1Q8TBY8 1022 aa20.53■□□□□ 0.88
SCAF11-204ENST00000395454 TOPAZ1Q8N9V7 1692 aa20.52■□□□□ 0.88
SCAF11-204ENST00000395454 UBAP1LF5GYI3 381 aa20.52■□□□□ 0.88
SCAF11-204ENST00000395454 BRD4O60885 1362 aaPredicted RBP20.51■□□□□ 0.87
SCAF11-204ENST00000395454 PHF8Q9UPP1 1060 aa20.51■□□□□ 0.87
SCAF11-204ENST00000395454 MYBBP1AQ9BQG0 1328 aaKnown RBP20.5■□□□□ 0.87
SCAF11-204ENST00000395454 NINLQ9Y2I6 1382 aa20.49■□□□□ 0.87
SCAF11-204ENST00000395454 NPC1L1Q9UHC9 1359 aa20.48■□□□□ 0.87
SCAF11-204ENST00000395454 PIP4K2BP78356 416 aa20.48■□□□□ 0.87
SCAF11-204ENST00000395454 BRINP3Q76B58 766 aa20.48■□□□□ 0.87
SCAF11-204ENST00000395454 NGDNQ8NEJ9 315 aaKnown RBP20.48■□□□□ 0.87
SCAF11-204ENST00000395454 PANK3Q9H999 370 aa20.48■□□□□ 0.87
SCAF11-204ENST00000395454 PLEKHG3A1L390 1219 aa20.47■□□□□ 0.87
SCAF11-204ENST00000395454 ACEP12821 1306 aa20.47■□□□□ 0.87
SCAF11-204ENST00000395454 FOXO3O43524 673 aa20.46■□□□□ 0.87
SCAF11-204ENST00000395454 TERF2IPQ9NYB0 399 aa20.45■□□□□ 0.86
SCAF11-204ENST00000395454 KIF1AQ12756 1690 aa20.45■□□□□ 0.86
SCAF11-204ENST00000395454 HDGFL2Q7Z4V5 671 aaPredicted RBP20.45■□□□□ 0.86
SCAF11-204ENST00000395454 ROBO1Q9Y6N7 1651 aa20.44■□□□□ 0.86
SCAF11-204ENST00000395454 A0A1W2PP64 1363 aa20.44■□□□□ 0.86
SCAF11-204ENST00000395454 ANKRD36BQ8N2N9 1353 aa20.44■□□□□ 0.86
SCAF11-204ENST00000395454 CD163L1Q9NR16 1453 aa20.44■□□□□ 0.86
SCAF11-204ENST00000395454 POLR3AO14802 1390 aaPredicted RBP20.43■□□□□ 0.86
SCAF11-204ENST00000395454 HNRNPUQ00839 825 aaKnown RBP eCLIP20.43■□□□□ 0.86
SCAF11-204ENST00000395454 PNISRQ8TF01 805 aaKnown RBP20.43■□□□□ 0.86
SCAF11-204ENST00000395454 DDX17Q92841 729 aaKnown RBP20.43■□□□□ 0.86
SCAF11-204ENST00000395454 PSME1Q06323 249 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 158.1 ms