RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 ORAI2Q96SN7 254 aa23.31■■□□□ 1.32
CHMP3-202ENST00000393773 QTRT2Q9H974 415 aaKnown RBP23.3■■□□□ 1.32
CHMP3-202ENST00000393773 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.3■■□□□ 1.32
CHMP3-202ENST00000393773 TECPR2O15040 1411 aa23.29■■□□□ 1.32
CHMP3-202ENST00000393773 FMN2Q9NZ56 1722 aa23.29■■□□□ 1.32
CHMP3-202ENST00000393773 ADAMTS2O95450 1211 aa23.28■■□□□ 1.32
CHMP3-202ENST00000393773 ATRNO75882 1429 aa23.26■■□□□ 1.31
CHMP3-202ENST00000393773 SRCAPQ6ZRS2 3230 aa23.26■■□□□ 1.31
CHMP3-202ENST00000393773 KIF1AQ12756 1690 aa23.25■■□□□ 1.31
CHMP3-202ENST00000393773 NGLY1Q96IV0 654 aa23.25■■□□□ 1.31
CHMP3-202ENST00000393773 SPATA31E1Q6ZUB1 1445 aa23.25■■□□□ 1.31
CHMP3-202ENST00000393773 SLC4A1APQ9BWU0 796 aaKnown RBP23.24■■□□□ 1.31
CHMP3-202ENST00000393773 ATAD2Q6PL18 1390 aa23.22■■□□□ 1.31
CHMP3-202ENST00000393773 FNBP4Q8N3X1 1017 aaPredicted RBP23.21■■□□□ 1.31
CHMP3-202ENST00000393773 USP21Q9UK80 565 aa23.21■■□□□ 1.31
CHMP3-202ENST00000393773 RGPD8O14715 1765 aaPredicted RBP23.2■■□□□ 1.3
CHMP3-202ENST00000393773 BCL9LQ86UU0 1499 aa23.2■■□□□ 1.3
CHMP3-202ENST00000393773 CCDC144AA2RUR9 1427 aa23.2■■□□□ 1.3
CHMP3-202ENST00000393773 PIK3C2GO75747 1445 aa23.2■■□□□ 1.3
CHMP3-202ENST00000393773 NPHP3Q7Z494 1330 aa23.2■■□□□ 1.3
CHMP3-202ENST00000393773 ABCA3Q99758 1704 aa23.19■■□□□ 1.3
CHMP3-202ENST00000393773 ADGRF5Q8IZF2 1346 aa23.19■■□□□ 1.3
CHMP3-202ENST00000393773 TRPC5Q9UL62 973 aaPredicted RBP23.19■■□□□ 1.3
CHMP3-202ENST00000393773 USP32Q8NFA0 1604 aa23.18■■□□□ 1.3
CHMP3-202ENST00000393773 LRPPRCP42704 1394 aaKnown RBP23.17■■□□□ 1.3
CHMP3-202ENST00000393773 FOXD1Q16676 465 aa23.17■■□□□ 1.3
CHMP3-202ENST00000393773 GLI3P10071 1580 aa23.16■■□□□ 1.3
CHMP3-202ENST00000393773 ANKRD30BQ9BXX2 1392 aa23.15■■□□□ 1.3
CHMP3-202ENST00000393773 PLEKHH1Q9ULM0 1364 aa23.15■■□□□ 1.3
CHMP3-202ENST00000393773 PLCH1Q4KWH8 1693 aa23.15■■□□□ 1.3
CHMP3-202ENST00000393773 BRWD3Q6RI45 1802 aa23.15■■□□□ 1.3
CHMP3-202ENST00000393773 ESCO1Q5FWF5 840 aa23.14■■□□□ 1.29
CHMP3-202ENST00000393773 ABCC11Q96J66 1382 aa23.14■■□□□ 1.29
CHMP3-202ENST00000393773 YTHDC2Q9H6S0 1430 aaKnown RBP23.11■■□□□ 1.29
CHMP3-202ENST00000393773 XPCQ01831 940 aaPredicted RBP23.11■■□□□ 1.29
CHMP3-202ENST00000393773 SLIT2O94813 1529 aa23.11■■□□□ 1.29
CHMP3-202ENST00000393773 NRXN1Q9ULB1 1477 aa23.11■■□□□ 1.29
CHMP3-202ENST00000393773 NWD2Q9ULI1 1742 aa23.11■■□□□ 1.29
CHMP3-202ENST00000393773 FOXO3O43524 673 aa23.1■■□□□ 1.29
CHMP3-202ENST00000393773 WAPLQ7Z5K2 1190 aa23.1■■□□□ 1.29
CHMP3-202ENST00000393773 STK26Q9P289 416 aa23.08■■□□□ 1.29
CHMP3-202ENST00000393773 RALGAPBQ86X10 1494 aa23.07■■□□□ 1.28
CHMP3-202ENST00000393773 NUTM2FA1L443 756 aa23.06■■□□□ 1.28
CHMP3-202ENST00000393773 RGL3Q3MIN7 710 aa23.06■■□□□ 1.28
CHMP3-202ENST00000393773 ADGRB2O60241 1585 aa23.06■■□□□ 1.28
CHMP3-202ENST00000393773 TMEM132EQ6IEE7 984 aa23.05■■□□□ 1.28
CHMP3-202ENST00000393773 TNS3Q68CZ2 1445 aa23.05■■□□□ 1.28
CHMP3-202ENST00000393773 SPATA31A3Q5VYP0 1347 aa23.05■■□□□ 1.28
CHMP3-202ENST00000393773 TRPM3Q9HCF6 1732 aaPredicted RBP23.03■■□□□ 1.28
CHMP3-202ENST00000393773 GJD4Q96KN9 370 aaPredicted RBP23.03■■□□□ 1.28
CHMP3-202ENST00000393773 MPHOSPH9Q99550 1183 aa23.03■■□□□ 1.28
CHMP3-202ENST00000393773 NRAPQ86VF7 1730 aa23.02■■□□□ 1.28
CHMP3-202ENST00000393773 DLC1Q96QB1 1528 aa23.02■■□□□ 1.28
CHMP3-202ENST00000393773 ALS2Q96Q42 1657 aa22.99■■□□□ 1.27
CHMP3-202ENST00000393773 CRYBG1Q9Y4K1 1723 aa22.99■■□□□ 1.27
CHMP3-202ENST00000393773 ADGRB1O14514 1584 aa22.98■■□□□ 1.27
CHMP3-202ENST00000393773 UNC5CLQ8IV45 518 aa22.98■■□□□ 1.27
CHMP3-202ENST00000393773 SIRT1Q96EB6 747 aa22.97■■□□□ 1.27
CHMP3-202ENST00000393773 CCDC125Q86Z20 511 aa22.96■■□□□ 1.27
CHMP3-202ENST00000393773 BLMP54132 1417 aaPredicted RBP22.96■■□□□ 1.27
CHMP3-202ENST00000393773 SBNO1A3KN83 1393 aa22.95■■□□□ 1.26
CHMP3-202ENST00000393773 KRT28Q7Z3Y7 464 aa22.95■■□□□ 1.26
CHMP3-202ENST00000393773 C14orf93Q9H972 538 aaKnown RBP22.95■■□□□ 1.26
CHMP3-202ENST00000393773 ANKARQ7Z5J8 1434 aa22.93■■□□□ 1.26
CHMP3-202ENST00000393773 ZRANB1Q9UGI0 708 aa22.93■■□□□ 1.26
CHMP3-202ENST00000393773 PHF8Q9UPP1 1060 aa22.93■■□□□ 1.26
CHMP3-202ENST00000393773 DHX57Q6P158 1386 aaKnown RBP22.92■■□□□ 1.26
CHMP3-202ENST00000393773 COL14A1Q05707 1796 aaKnown RBP22.91■■□□□ 1.26
CHMP3-202ENST00000393773 ARHGEF10O15013 1369 aa22.9■■□□□ 1.26
CHMP3-202ENST00000393773 LRP5O75197 1615 aa22.9■■□□□ 1.26
CHMP3-202ENST00000393773 CFAP70Q5T0N1 1121 aa22.9■■□□□ 1.26
CHMP3-202ENST00000393773 ITSN1Q15811 1721 aa22.88■■□□□ 1.25
CHMP3-202ENST00000393773 ARHGEF28Q8N1W1 1705 aaKnown RBP22.88■■□□□ 1.25
CHMP3-202ENST00000393773 TULP4Q9NRJ4 1543 aa22.88■■□□□ 1.25
CHMP3-202ENST00000393773 VPS72Q15906 364 aa22.88■■□□□ 1.25
CHMP3-202ENST00000393773 CABLES1Q8TDN4 633 aa22.88■■□□□ 1.25
CHMP3-202ENST00000393773 PRAM1Q96QH2 718 aa22.88■■□□□ 1.25
CHMP3-202ENST00000393773 PSME1Q06323 249 aa22.86■■□□□ 1.25
CHMP3-202ENST00000393773 RGPD1P0DJD0 1748 aa22.85■■□□□ 1.25
CHMP3-202ENST00000393773 SAFB2Q14151 953 aaKnown RBP eCLIP22.85■■□□□ 1.25
CHMP3-202ENST00000393773 THSD7AQ9UPZ6 1657 aa22.84■■□□□ 1.25
CHMP3-202ENST00000393773 HAP1P54257 671 aaPredicted RBP22.84■■□□□ 1.25
CHMP3-202ENST00000393773 SEPT12Q8IYM1 358 aa22.84■■□□□ 1.25
CHMP3-202ENST00000393773 ACIN1Q9UKV3 1341 aaKnown RBP22.83■■□□□ 1.25
CHMP3-202ENST00000393773 PHRF1Q9P1Y6 1649 aaKnown RBP22.83■■□□□ 1.25
CHMP3-202ENST00000393773 TNS1Q9HBL0 1735 aaKnown RBP22.83■■□□□ 1.25
CHMP3-202ENST00000393773 ONECUT3O60422 494 aaPredicted RBP22.82■■□□□ 1.24
CHMP3-202ENST00000393773 DEFB132Q7Z7B7 95 aa22.82■■□□□ 1.24
CHMP3-202ENST00000393773 TOPAZ1Q8N9V7 1692 aa22.81■■□□□ 1.24
CHMP3-202ENST00000393773 RAB3GAP2Q9H2M9 1393 aa22.8■■□□□ 1.24
CHMP3-202ENST00000393773 PLEKHG5O94827 1062 aa22.8■■□□□ 1.24
CHMP3-202ENST00000393773 PMFBP1Q8TBY8 1022 aa22.8■■□□□ 1.24
CHMP3-202ENST00000393773 PRR36Q9H6K5 1346 aa22.8■■□□□ 1.24
CHMP3-202ENST00000393773 EIF3AQ14152 1382 aaKnown RBP22.78■■□□□ 1.24
CHMP3-202ENST00000393773 FAM83GA6ND36 823 aa22.78■■□□□ 1.24
CHMP3-202ENST00000393773 LMOD2Q6P5Q4 547 aa22.78■■□□□ 1.24
CHMP3-202ENST00000393773 KRT27Q7Z3Y8 459 aa22.77■■□□□ 1.24
CHMP3-202ENST00000393773 POGKQ9P215 609 aa22.77■■□□□ 1.24
CHMP3-202ENST00000393773 ATP7BP35670 1465 aa22.77■■□□□ 1.24
CHMP3-202ENST00000393773 CCDC9Q9Y3X0 531 aaKnown RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms