RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 HDGFP51858 240 aaKnown RBP25.45■■□□□ 1.67
CCDC50-202ENST00000392456 CDCA8Q53HL2 280 aa25.45■■□□□ 1.67
CCDC50-202ENST00000392456 PRAM1Q96QH2 718 aa25.45■■□□□ 1.67
CCDC50-202ENST00000392456 QRICH2Q9H0J4 1663 aa25.45■■□□□ 1.66
CCDC50-202ENST00000392456 SETD1AO15047 1707 aaKnown RBP25.43■■□□□ 1.66
CCDC50-202ENST00000392456 WAPLQ7Z5K2 1190 aa25.42■■□□□ 1.66
CCDC50-202ENST00000392456 THEMISQ8N1K5 641 aaPredicted RBP25.41■■□□□ 1.66
CCDC50-202ENST00000392456 SLC26A8Q96RN1 970 aa25.4■■□□□ 1.66
CCDC50-202ENST00000392456 POGKQ9P215 609 aa25.4■■□□□ 1.66
CCDC50-202ENST00000392456 RTL5Q5HYW3 569 aaPredicted RBP25.39■■□□□ 1.66
CCDC50-202ENST00000392456 MINK1Q8N4C8 1332 aaPredicted RBP25.39■■□□□ 1.66
CCDC50-202ENST00000392456 ADAMTS13Q76LX8 1427 aa25.39■■□□□ 1.65
CCDC50-202ENST00000392456 MYOM1P52179 1685 aa25.38■■□□□ 1.65
CCDC50-202ENST00000392456 PLEKHH1Q9ULM0 1364 aa25.38■■□□□ 1.65
CCDC50-202ENST00000392456 CC2D1BQ5T0F9 858 aaKnown RBP25.38■■□□□ 1.65
CCDC50-202ENST00000392456 EID1Q9Y6B2 187 aa25.38■■□□□ 1.65
CCDC50-202ENST00000392456 LRPPRCP42704 1394 aaKnown RBP25.37■■□□□ 1.65
CCDC50-202ENST00000392456 ARHGAP23Q9P227 1491 aa25.37■■□□□ 1.65
CCDC50-202ENST00000392456 PAK3O75914 559 aaPredicted RBP25.37■■□□□ 1.65
CCDC50-202ENST00000392456 CABP2Q9NPB3 220 aa25.37■■□□□ 1.65
CCDC50-202ENST00000392456 SLIT1O75093 1534 aa25.36■■□□□ 1.65
CCDC50-202ENST00000392456 TULP4Q9NRJ4 1543 aa25.36■■□□□ 1.65
CCDC50-202ENST00000392456 ZMYND15Q9H091 742 aa25.36■■□□□ 1.65
CCDC50-202ENST00000392456 PLEKHG1Q9ULL1 1385 aa25.36■■□□□ 1.65
CCDC50-202ENST00000392456 SLC12A5Q9H2X9 1139 aa25.36■■□□□ 1.65
CCDC50-202ENST00000392456 MRS2Q9HD23 443 aa25.35■■□□□ 1.65
CCDC50-202ENST00000392456 ABCC11Q96J66 1382 aa25.34■■□□□ 1.65
CCDC50-202ENST00000392456 CEP170BQ9Y4F5 1589 aaPredicted RBP25.34■■□□□ 1.65
CCDC50-202ENST00000392456 EVC2Q86UK5 1308 aa25.34■■□□□ 1.65
CCDC50-202ENST00000392456 TMC1Q8TDI8 760 aa25.34■■□□□ 1.65
CCDC50-202ENST00000392456 CARD14Q9BXL6 1004 aa25.34■■□□□ 1.65
CCDC50-202ENST00000392456 GLIPR1L2Q4G1C9 344 aa25.33■■□□□ 1.65
CCDC50-202ENST00000392456 AMER1Q5JTC6 1135 aaPredicted RBP25.3■■□□□ 1.64
CCDC50-202ENST00000392456 KNSTRNQ9Y448 316 aa25.3■■□□□ 1.64
CCDC50-202ENST00000392456 KTN1Q86UP2 1357 aaKnown RBP25.29■■□□□ 1.64
CCDC50-202ENST00000392456 MED14O60244 1454 aa25.28■■□□□ 1.64
CCDC50-202ENST00000392456 PARD3Q8TEW0 1356 aa25.28■■□□□ 1.64
CCDC50-202ENST00000392456 SRPK2P78362 688 aaKnown RBP25.28■■□□□ 1.64
CCDC50-202ENST00000392456 RALBP1Q15311 655 aa25.28■■□□□ 1.64
CCDC50-202ENST00000392456 SETD1BQ9UPS6 1966 aaKnown RBP25.27■■□□□ 1.64
CCDC50-202ENST00000392456 FAM9BQ8IZU0 186 aa25.27■■□□□ 1.64
CCDC50-202ENST00000392456 DLC1Q96QB1 1528 aa25.26■■□□□ 1.64
CCDC50-202ENST00000392456 PTPRUQ92729 1446 aa25.26■■□□□ 1.63
CCDC50-202ENST00000392456 CDK19Q9BWU1 502 aa25.26■■□□□ 1.63
CCDC50-202ENST00000392456 ROBO2Q9HCK4 1378 aa25.25■■□□□ 1.63
CCDC50-202ENST00000392456 MYBBP1AQ9BQG0 1328 aaKnown RBP25.24■■□□□ 1.63
CCDC50-202ENST00000392456 RSPH6AQ9H0K4 717 aa25.23■■□□□ 1.63
CCDC50-202ENST00000392456 TBX22Q9Y458 520 aa25.23■■□□□ 1.63
CCDC50-202ENST00000392456 TECPR2O15040 1411 aa25.22■■□□□ 1.63
CCDC50-202ENST00000392456 PUS7Q96PZ0 661 aaKnown RBP25.22■■□□□ 1.63
CCDC50-202ENST00000392456 AMOTL2Q9Y2J4 779 aa25.2■■□□□ 1.62
CCDC50-202ENST00000392456 ANKLE2Q86XL3 938 aa25.2■■□□□ 1.62
CCDC50-202ENST00000392456 VSIG10Q8N0Z9 540 aa25.19■■□□□ 1.62
CCDC50-202ENST00000392456 SIRT1Q96EB6 747 aa25.18■■□□□ 1.62
CCDC50-202ENST00000392456 ZNF142P52746 1687 aaPredicted RBP25.18■■□□□ 1.62
CCDC50-202ENST00000392456 FAM135BQ49AJ0 1406 aa25.17■■□□□ 1.62
CCDC50-202ENST00000392456 NSD3Q9BZ95 1437 aa25.17■■□□□ 1.62
CCDC50-202ENST00000392456 PNISRQ8TF01 805 aaKnown RBP25.16■■□□□ 1.62
CCDC50-202ENST00000392456 CPS1P31327 1500 aa25.16■■□□□ 1.62
CCDC50-202ENST00000392456 WASLO00401 505 aaPredicted RBP25.15■■□□□ 1.62
CCDC50-202ENST00000392456 NLRP13Q86W25 1043 aa25.15■■□□□ 1.62
CCDC50-202ENST00000392456 CABP1Q9NZU7 370 aa25.15■■□□□ 1.62
CCDC50-202ENST00000392456 KNDC1Q76NI1 1749 aa25.15■■□□□ 1.62
CCDC50-202ENST00000392456 NCKAP5LQ9HCH0 1330 aa25.14■■□□□ 1.62
CCDC50-202ENST00000392456 HNRNPUQ00839 825 aaKnown RBP eCLIP25.14■■□□□ 1.61
CCDC50-202ENST00000392456 BRD4O60885 1362 aaPredicted RBP25.14■■□□□ 1.61
CCDC50-202ENST00000392456 KDM4FA0A1W2PPD8 638 aa25.13■■□□□ 1.61
CCDC50-202ENST00000392456 ATAD2Q6PL18 1390 aa25.12■■□□□ 1.61
CCDC50-202ENST00000392456 ANKRD36BQ8N2N9 1353 aa25.12■■□□□ 1.61
CCDC50-202ENST00000392456 A0A1W2PP64 1363 aa25.12■■□□□ 1.61
CCDC50-202ENST00000392456 PPP2R1AP30153 589 aa25.11■■□□□ 1.61
CCDC50-202ENST00000392456 NPC1L1Q9UHC9 1359 aa25.11■■□□□ 1.61
CCDC50-202ENST00000392456 KCNA6P17658 529 aa25.11■■□□□ 1.61
CCDC50-202ENST00000392456 SENP3-EIF4A1A0A087X0R7 540 aa25.1■■□□□ 1.61
CCDC50-202ENST00000392456 CD163L1Q9NR16 1453 aa25.1■■□□□ 1.61
CCDC50-202ENST00000392456 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.09■■□□□ 1.61
CCDC50-202ENST00000392456 NUTM2FA1L443 756 aa25.08■■□□□ 1.61
CCDC50-202ENST00000392456 NUDT16Q96DE0 195 aaKnown RBP25.06■■□□□ 1.6
CCDC50-202ENST00000392456 BRPF3Q9ULD4 1205 aa25.06■■□□□ 1.6
CCDC50-202ENST00000392456 PRR36Q9H6K5 1346 aa25.06■■□□□ 1.6
CCDC50-202ENST00000392456 DIP2AQ14689 1571 aa25.06■■□□□ 1.6
CCDC50-202ENST00000392456 RBM33Q96EV2 1170 aaKnown RBP25.05■■□□□ 1.6
CCDC50-202ENST00000392456 TNNT2P45379 298 aaPredicted RBP25.05■■□□□ 1.6
CCDC50-202ENST00000392456 NINLQ9Y2I6 1382 aa25.05■■□□□ 1.6
CCDC50-202ENST00000392456 TERF2IPQ9NYB0 399 aa25.03■■□□□ 1.6
CCDC50-202ENST00000392456 CGNL1Q0VF96 1302 aa25.02■■□□□ 1.6
CCDC50-202ENST00000392456 PTCH1Q13635 1447 aa25.02■■□□□ 1.6
CCDC50-202ENST00000392456 HSPA2P54652 639 aa25.02■■□□□ 1.6
CCDC50-202ENST00000392456 NPHP4O75161 1426 aaPredicted RBP25.01■■□□□ 1.59
CCDC50-202ENST00000392456 IPO9Q96P70 1041 aaKnown RBP25.01■■□□□ 1.59
CCDC50-202ENST00000392456 MORC1Q86VD1 984 aa25.01■■□□□ 1.59
CCDC50-202ENST00000392456 XRN1Q8IZH2 1706 aaKnown RBP25■■□□□ 1.59
CCDC50-202ENST00000392456 PPIP5K1Q6PFW1 1433 aa25■■□□□ 1.59
CCDC50-202ENST00000392456 CCDC61Q9Y6R9 512 aa25■■□□□ 1.59
CCDC50-202ENST00000392456 PIK3R4Q99570 1358 aa24.99■■□□□ 1.59
CCDC50-202ENST00000392456 GGNBP2Q9H3C7 697 aa24.99■■□□□ 1.59
CCDC50-202ENST00000392456 HDGFL2Q7Z4V5 671 aaPredicted RBP24.98■■□□□ 1.59
CCDC50-202ENST00000392456 FYB1O15117 783 aa24.98■■□□□ 1.59
CCDC50-202ENST00000392456 ATP7BP35670 1465 aa24.98■■□□□ 1.59
CCDC50-202ENST00000392456 USP35Q9P2H5 1018 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms