RNA–Protein interactions for RNA: ENST00000391941.6

ERCC2-201, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC2, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-201ENST00000391941 NGEFQ8N5V2 710 aa22.99■■□□□ 1.27
ERCC2-201ENST00000391941 TBC1D32Q96NH3 1257 aa22.98■■□□□ 1.27
ERCC2-201ENST00000391941 U2AF1L5P0DN76 240 aaPredicted RBP22.97■■□□□ 1.27
ERCC2-201ENST00000391941 U2AF1Q01081 240 aaKnown RBP eCLIP22.97■■□□□ 1.27
ERCC2-201ENST00000391941 RUNDC1Q96C34 613 aa22.96■■□□□ 1.27
ERCC2-201ENST00000391941 POLR3AO14802 1390 aaPredicted RBP22.96■■□□□ 1.27
ERCC2-201ENST00000391941 CHD1O14646 1710 aa22.96■■□□□ 1.27
ERCC2-201ENST00000391941 UPF2Q9HAU5 1272 aaKnown RBP22.95■■□□□ 1.27
ERCC2-201ENST00000391941 NINLQ9Y2I6 1382 aa22.95■■□□□ 1.26
ERCC2-201ENST00000391941 ZFYVE16Q7Z3T8 1539 aa22.95■■□□□ 1.26
ERCC2-201ENST00000391941 SHROOM2Q13796 1616 aa22.94■■□□□ 1.26
ERCC2-201ENST00000391941 KANK1Q14678 1352 aa22.94■■□□□ 1.26
ERCC2-201ENST00000391941 RTEL1-TNFRSF6BF6WH68 1400 aa22.93■■□□□ 1.26
ERCC2-201ENST00000391941 FTSJ3Q8IY81 847 aaKnown RBP22.93■■□□□ 1.26
ERCC2-201ENST00000391941 FAM43AQ8N2R8 423 aa22.93■■□□□ 1.26
ERCC2-201ENST00000391941 PMFBP1Q8TBY8 1022 aa22.92■■□□□ 1.26
ERCC2-201ENST00000391941 U2SURPO15042 1029 aaKnown RBP22.91■■□□□ 1.26
ERCC2-201ENST00000391941 XRCC6P12956 609 aaKnown RBP eCLIP22.91■■□□□ 1.26
ERCC2-201ENST00000391941 VIRMAQ69YN4 1812 aaKnown RBP22.91■■□□□ 1.26
ERCC2-201ENST00000391941 ABCA6Q8N139 1617 aa22.91■■□□□ 1.26
ERCC2-201ENST00000391941 FOXD4L1Q9NU39 408 aa22.91■■□□□ 1.26
ERCC2-201ENST00000391941 TET3O43151 1660 aa22.9■■□□□ 1.26
ERCC2-201ENST00000391941 ZCCHC11Q5TAX3 1644 aaKnown RBP22.9■■□□□ 1.26
ERCC2-201ENST00000391941 ITPRIPQ8IWB1 547 aa22.9■■□□□ 1.26
ERCC2-201ENST00000391941 KIAA1210Q9ULL0 1709 aa22.9■■□□□ 1.26
ERCC2-201ENST00000391941 MAP3K4Q9Y6R4 1608 aa22.89■■□□□ 1.26
ERCC2-201ENST00000391941 EXOSC9Q06265 439 aaKnown RBP22.89■■□□□ 1.25
ERCC2-201ENST00000391941 RWDD1Q9H446 243 aaPredicted RBP22.88■■□□□ 1.25
ERCC2-201ENST00000391941 SMC4Q9NTJ3 1288 aa22.88■■□□□ 1.25
ERCC2-201ENST00000391941 DEPDC5O75140 1603 aa22.88■■□□□ 1.25
ERCC2-201ENST00000391941 MVPQ14764 893 aaKnown RBP22.87■■□□□ 1.25
ERCC2-201ENST00000391941 C22orf23Q9BZE7 217 aa22.87■■□□□ 1.25
ERCC2-201ENST00000391941 CABP2Q9NPB3 220 aa22.87■■□□□ 1.25
ERCC2-201ENST00000391941 MYOM2P54296 1465 aa22.86■■□□□ 1.25
ERCC2-201ENST00000391941 NOS1P29475 1434 aa22.86■■□□□ 1.25
ERCC2-201ENST00000391941 CFAP65Q6ZU64 1925 aaKnown RBP22.86■■□□□ 1.25
ERCC2-201ENST00000391941 TRIM27P14373 513 aa22.85■■□□□ 1.25
ERCC2-201ENST00000391941 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
ERCC2-201ENST00000391941 FBLN1P23142 703 aa22.85■■□□□ 1.25
ERCC2-201ENST00000391941 MCM4P33991 863 aa22.85■■□□□ 1.25
ERCC2-201ENST00000391941 DZIP1LQ8IYY4 767 aaKnown RBP22.85■■□□□ 1.25
ERCC2-201ENST00000391941 SSH1Q8WYL5 1049 aa22.84■■□□□ 1.25
ERCC2-201ENST00000391941 WDR63Q8IWG1 891 aa22.83■■□□□ 1.25
ERCC2-201ENST00000391941 GGNBP2Q9H3C7 697 aa22.83■■□□□ 1.25
ERCC2-201ENST00000391941 SHPRHQ149N8 1683 aa22.83■■□□□ 1.25
ERCC2-201ENST00000391941 VWDEQ8N2E2 1590 aa22.83■■□□□ 1.25
ERCC2-201ENST00000391941 GGT6Q6P531 493 aa22.83■■□□□ 1.25
ERCC2-201ENST00000391941 ZKSCAN2Q63HK3 967 aa22.83■■□□□ 1.24
ERCC2-201ENST00000391941 LNPKQ9C0E8 428 aa22.82■■□□□ 1.24
ERCC2-201ENST00000391941 STK26Q9P289 416 aa22.82■■□□□ 1.24
ERCC2-201ENST00000391941 IQSEC2Q5JU85 1478 aa22.82■■□□□ 1.24
ERCC2-201ENST00000391941 ATP7AQ04656 1500 aa22.82■■□□□ 1.24
ERCC2-201ENST00000391941 GOLGA6L3A6NEY3 463 aa22.82■■□□□ 1.24
ERCC2-201ENST00000391941 NOB1Q9ULX3 412 aaKnown RBP22.82■■□□□ 1.24
ERCC2-201ENST00000391941 SBNO2Q9Y2G9 1366 aa22.81■■□□□ 1.24
ERCC2-201ENST00000391941 TRAK2O60296 914 aa22.8■■□□□ 1.24
ERCC2-201ENST00000391941 AAMPQ13685 434 aa22.8■■□□□ 1.24
ERCC2-201ENST00000391941 C1orf115Q9H7X2 142 aa22.8■■□□□ 1.24
ERCC2-201ENST00000391941 TMEM57Q8N5G2 664 aa22.79■■□□□ 1.24
ERCC2-201ENST00000391941 NEURL4Q96JN8 1562 aa22.78■■□□□ 1.24
ERCC2-201ENST00000391941 CFAP53Q96M91 514 aa22.77■■□□□ 1.24
ERCC2-201ENST00000391941 MYH16Q9H6N6 1097 aa22.77■■□□□ 1.24
ERCC2-201ENST00000391941 NAP1L5Q96NT1 182 aaPredicted RBP22.77■■□□□ 1.24
ERCC2-201ENST00000391941 FANCAO15360 1455 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 L1TD1Q5T7N2 865 aaKnown RBP22.76■■□□□ 1.23
ERCC2-201ENST00000391941 RSPH6AQ9H0K4 717 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 UHRF1BP1LA0JNW5 1464 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 MROH1Q8NDA8 1641 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 MROH2AA6NES4 1674 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 NRXN1Q9ULB1 1477 aa22.76■■□□□ 1.23
ERCC2-201ENST00000391941 CCDC27Q2M243 656 aa22.75■■□□□ 1.23
ERCC2-201ENST00000391941 ZNF518AQ6AHZ1 1483 aa22.75■■□□□ 1.23
ERCC2-201ENST00000391941 INO80Q9ULG1 1556 aaPredicted RBP22.75■■□□□ 1.23
ERCC2-201ENST00000391941 MYO3AQ8NEV4 1616 aa22.75■■□□□ 1.23
ERCC2-201ENST00000391941 TRIM35Q9UPQ4 493 aa22.74■■□□□ 1.23
ERCC2-201ENST00000391941 KIF1BO60333 1816 aa22.74■■□□□ 1.23
ERCC2-201ENST00000391941 ELL2O00472 640 aaPredicted RBP22.74■■□□□ 1.23
ERCC2-201ENST00000391941 RBM42Q9BTD8 480 aaKnown RBP22.74■■□□□ 1.23
ERCC2-201ENST00000391941 THUMPD2Q9BTF0 503 aaKnown RBP22.74■■□□□ 1.23
ERCC2-201ENST00000391941 CD2BP2O95400 341 aaKnown RBP22.73■■□□□ 1.23
ERCC2-201ENST00000391941 ZMYM3Q14202 1370 aa22.73■■□□□ 1.23
ERCC2-201ENST00000391941 ARAP3Q8WWN8 1544 aa22.72■■□□□ 1.23
ERCC2-201ENST00000391941 C14orf93Q9H972 538 aaKnown RBP22.72■■□□□ 1.23
ERCC2-201ENST00000391941 CHMP5Q9NZZ3 219 aa22.72■■□□□ 1.23
ERCC2-201ENST00000391941 TMPOP42166 694 aaKnown RBP22.72■■□□□ 1.23
ERCC2-201ENST00000391941 EFCAB6Q5THR3 1501 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 IFT172Q9UG01 1749 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 FSD2A1L4K1 749 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 ATF7IPQ6VMQ6 1270 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 HSCBQ8IWL3 235 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 UBE2Q2Q8WVN8 375 aa22.71■■□□□ 1.23
ERCC2-201ENST00000391941 ADGRL1O94910 1474 aa22.7■■□□□ 1.22
ERCC2-201ENST00000391941 CD109Q6YHK3 1445 aa22.7■■□□□ 1.22
ERCC2-201ENST00000391941 RIPK4P57078 832 aa22.69■■□□□ 1.22
ERCC2-201ENST00000391941 SRPK2P78362 688 aaKnown RBP22.69■■□□□ 1.22
ERCC2-201ENST00000391941 ZNF692Q9BU19 519 aaPredicted RBP22.69■■□□□ 1.22
ERCC2-201ENST00000391941 GAS2L3Q86XJ1 694 aa22.68■■□□□ 1.22
ERCC2-201ENST00000391941 PPRC1Q5VV67 1664 aaKnown RBP22.68■■□□□ 1.22
ERCC2-201ENST00000391941 ERBB4Q15303 1308 aa22.68■■□□□ 1.22
ERCC2-201ENST00000391941 TNPO1Q92973 898 aaKnown RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms