RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 RICTORQ6R327 1708 aa18.65■□□□□ 0.58
VPS9D1-201ENST00000389386 ISY1Q9ULR0 285 aaKnown RBP18.65■□□□□ 0.58
VPS9D1-201ENST00000389386 SLFN5Q08AF3 891 aa18.65■□□□□ 0.58
VPS9D1-201ENST00000389386 COL17A1Q9UMD9 1497 aaPredicted RBP18.64■□□□□ 0.57
VPS9D1-201ENST00000389386 TRMT2AQ8IZ69 625 aaKnown RBP18.63■□□□□ 0.57
VPS9D1-201ENST00000389386 UPF2Q9HAU5 1272 aaKnown RBP18.63■□□□□ 0.57
VPS9D1-201ENST00000389386 DISP3Q9P2K9 1392 aa18.63■□□□□ 0.57
VPS9D1-201ENST00000389386 CHMP5Q9NZZ3 219 aa18.62■□□□□ 0.57
VPS9D1-201ENST00000389386 FRMPD1Q5SYB0 1578 aa18.62■□□□□ 0.57
VPS9D1-201ENST00000389386 PDE4CQ08493 712 aa18.62■□□□□ 0.57
VPS9D1-201ENST00000389386 TESK2Q96S53 571 aa18.62■□□□□ 0.57
VPS9D1-201ENST00000389386 DNAJC5Q9H3Z4 198 aa18.62■□□□□ 0.57
VPS9D1-201ENST00000389386 KANK1Q14678 1352 aa18.61■□□□□ 0.57
VPS9D1-201ENST00000389386 CFAP65Q6ZU64 1925 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-201ENST00000389386 SPRYD3Q8NCJ5 442 aa18.61■□□□□ 0.57
VPS9D1-201ENST00000389386 TRIM44Q96DX7 344 aaPredicted RBP18.61■□□□□ 0.57
VPS9D1-201ENST00000389386 ATP10AO60312 1499 aa18.6■□□□□ 0.57
VPS9D1-201ENST00000389386 BCAR3O75815 825 aa18.6■□□□□ 0.57
VPS9D1-201ENST00000389386 PANK3Q9H999 370 aa18.6■□□□□ 0.57
VPS9D1-201ENST00000389386 KIAA1211Q6ZU35 1233 aa18.59■□□□□ 0.57
VPS9D1-201ENST00000389386 DIP2CQ9Y2E4 1556 aa18.59■□□□□ 0.57
VPS9D1-201ENST00000389386 MLECQ14165 292 aa18.58■□□□□ 0.57
VPS9D1-201ENST00000389386 CGNL1Q0VF96 1302 aa18.58■□□□□ 0.57
VPS9D1-201ENST00000389386 MROH1Q8NDA8 1641 aa18.57■□□□□ 0.56
VPS9D1-201ENST00000389386 UGGT1Q9NYU2 1555 aa18.57■□□□□ 0.56
VPS9D1-201ENST00000389386 GPRASP1Q5JY77 1395 aa18.57■□□□□ 0.56
VPS9D1-201ENST00000389386 CLUAP1Q96AJ1 413 aa18.57■□□□□ 0.56
VPS9D1-201ENST00000389386 DEPDC5O75140 1603 aa18.56■□□□□ 0.56
VPS9D1-201ENST00000389386 DDX11L8A8MPP1 907 aa18.56■□□□□ 0.56
VPS9D1-201ENST00000389386 WDR43Q15061 677 aaKnown RBP eCLIP18.56■□□□□ 0.56
VPS9D1-201ENST00000389386 PDE3AQ14432 1141 aa18.56■□□□□ 0.56
VPS9D1-201ENST00000389386 ZMYM3Q14202 1370 aa18.56■□□□□ 0.56
VPS9D1-201ENST00000389386 NKTRP30414 1462 aaKnown RBP18.55■□□□□ 0.56
VPS9D1-201ENST00000389386 CHGAP10645 457 aaKnown RBP18.55■□□□□ 0.56
VPS9D1-201ENST00000389386 SPINK5Q9NQ38 1064 aaPredicted RBP18.55■□□□□ 0.56
VPS9D1-201ENST00000389386 GAS2L3Q86XJ1 694 aa18.54■□□□□ 0.56
VPS9D1-201ENST00000389386 CLTCL1P53675 1640 aa18.54■□□□□ 0.56
VPS9D1-201ENST00000389386 EIF2AK4Q9P2K8 1649 aaKnown RBP18.54■□□□□ 0.56
VPS9D1-201ENST00000389386 PRDM15P57071 1507 aaPredicted RBP18.53■□□□□ 0.56
VPS9D1-201ENST00000389386 CEP152O94986 1710 aa18.53■□□□□ 0.56
VPS9D1-201ENST00000389386 RIPK4P57078 832 aa18.53■□□□□ 0.56
VPS9D1-201ENST00000389386 TMF1P82094 1093 aa18.53■□□□□ 0.56
VPS9D1-201ENST00000389386 OFD1O75665 1012 aa18.52■□□□□ 0.56
VPS9D1-201ENST00000389386 SENP3Q9H4L4 574 aaPredicted RBP18.52■□□□□ 0.56
VPS9D1-201ENST00000389386 PPP2R1AP30153 589 aa18.52■□□□□ 0.56
VPS9D1-201ENST00000389386 ZNF692Q9BU19 519 aaPredicted RBP18.52■□□□□ 0.56
VPS9D1-201ENST00000389386 SPHKAPQ2M3C7 1700 aa18.52■□□□□ 0.55
VPS9D1-201ENST00000389386 TRPM2O94759 1503 aa18.51■□□□□ 0.55
VPS9D1-201ENST00000389386 TERF1P54274 439 aa18.51■□□□□ 0.55
VPS9D1-201ENST00000389386 CFAP70Q5T0N1 1121 aa18.51■□□□□ 0.55
VPS9D1-201ENST00000389386 COG6Q9Y2V7 657 aa18.5■□□□□ 0.55
VPS9D1-201ENST00000389386 VWDEQ8N2E2 1590 aa18.5■□□□□ 0.55
VPS9D1-201ENST00000389386 PANK1Q8TE04 598 aa18.5■□□□□ 0.55
VPS9D1-201ENST00000389386 PTPRTO14522 1441 aa18.5■□□□□ 0.55
VPS9D1-201ENST00000389386 ADGRF5Q8IZF2 1346 aa18.49■□□□□ 0.55
VPS9D1-201ENST00000389386 TET3O43151 1660 aa18.49■□□□□ 0.55
VPS9D1-201ENST00000389386 NINLQ9Y2I6 1382 aa18.48■□□□□ 0.55
VPS9D1-201ENST00000389386 MAP7D2Q96T17 732 aa18.48■□□□□ 0.55
VPS9D1-201ENST00000389386 ZSCAN30Q86W11 494 aa18.48■□□□□ 0.55
VPS9D1-201ENST00000389386 PPP1R9BQ96SB3 815 aa18.48■□□□□ 0.55
VPS9D1-201ENST00000389386 MADDQ8WXG6 1647 aa18.47■□□□□ 0.55
VPS9D1-201ENST00000389386 PDZRN3Q9UPQ7 1066 aa18.47■□□□□ 0.55
VPS9D1-201ENST00000389386 E9PSI1 815 aa18.47■□□□□ 0.55
VPS9D1-201ENST00000389386 DDIT3P35638 169 aa18.47■□□□□ 0.55
VPS9D1-201ENST00000389386 PMFBP1Q8TBY8 1022 aa18.47■□□□□ 0.55
VPS9D1-201ENST00000389386 C22orf23Q9BZE7 217 aa18.46■□□□□ 0.55
VPS9D1-201ENST00000389386 RNF17Q9BXT8 1623 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-201ENST00000389386 CCDC173Q0VFZ6 552 aa18.46■□□□□ 0.55
VPS9D1-201ENST00000389386 NUTM2DQ5VT03 806 aaPredicted RBP18.46■□□□□ 0.55
VPS9D1-201ENST00000389386 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.45■□□□□ 0.54
VPS9D1-201ENST00000389386 NPATQ14207 1427 aa18.45■□□□□ 0.54
VPS9D1-201ENST00000389386 PCDHB15Q9Y5E8 787 aa18.45■□□□□ 0.54
VPS9D1-201ENST00000389386 CCDC146Q8IYE0 955 aa18.44■□□□□ 0.54
VPS9D1-201ENST00000389386 SIGLEC1Q9BZZ2 1709 aa18.44■□□□□ 0.54
VPS9D1-201ENST00000389386 EFCAB6Q5THR3 1501 aa18.44■□□□□ 0.54
VPS9D1-201ENST00000389386 APAF1O14727 1248 aa18.43■□□□□ 0.54
VPS9D1-201ENST00000389386 NCOA3Q9Y6Q9 1424 aa18.43■□□□□ 0.54
VPS9D1-201ENST00000389386 PDIA4P13667 645 aaKnown RBP18.43■□□□□ 0.54
VPS9D1-201ENST00000389386 SKOR2Q2VWA4 1001 aaPredicted RBP18.43■□□□□ 0.54
VPS9D1-201ENST00000389386 ABCC3O15438 1527 aa18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 FBXO31Q5XUX0 539 aaPredicted RBP18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 TNPO1Q92973 898 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 FAM13BQ9NYF5 915 aa18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 DMRT2Q9Y5R5 561 aa18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 LAMC1P11047 1609 aa18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 CANXP27824 592 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-201ENST00000389386 HSCBQ8IWL3 235 aa18.41■□□□□ 0.54
VPS9D1-201ENST00000389386 SMAP1Q8IYB5 467 aaPredicted RBP18.41■□□□□ 0.54
VPS9D1-201ENST00000389386 BCL11BQ9C0K0 894 aaPredicted RBP18.41■□□□□ 0.54
VPS9D1-201ENST00000389386 AMER1Q5JTC6 1135 aaPredicted RBP18.4■□□□□ 0.54
VPS9D1-201ENST00000389386 KNSTRNQ9Y448 316 aa18.4■□□□□ 0.54
VPS9D1-201ENST00000389386 MFAP1P55081 439 aaKnown RBP18.39■□□□□ 0.53
VPS9D1-201ENST00000389386 MSNP26038 577 aaKnown RBP18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 NASPP49321 788 aaPredicted RBP18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 PLPPR3Q6T4P5 718 aa18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 GBP4Q96PP9 640 aa18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 PIK3C2GO75747 1445 aa18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 SCAF11Q99590 1463 aaKnown RBP18.38■□□□□ 0.53
VPS9D1-201ENST00000389386 LMTK2Q8IWU2 1503 aa18.37■□□□□ 0.53
VPS9D1-201ENST00000389386 CIZ1Q9ULV3 898 aaPredicted RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 227 ms