RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 RRAGDQ9NQL2 400 aaPredicted RBP23.65■■□□□ 1.38
CCDC3-201ENST00000378825 NPM1P06748 294 aaKnown RBP eCLIP23.65■■□□□ 1.38
CCDC3-201ENST00000378825 BECN1Q14457 450 aa23.64■■□□□ 1.38
CCDC3-201ENST00000378825 VWDEQ8N2E2 1590 aa23.63■■□□□ 1.37
CCDC3-201ENST00000378825 MROH1Q8NDA8 1641 aa23.63■■□□□ 1.37
CCDC3-201ENST00000378825 KDM5AP29375 1690 aaKnown RBP23.63■■□□□ 1.37
CCDC3-201ENST00000378825 TCP11L2Q8N4U5 519 aa23.62■■□□□ 1.37
CCDC3-201ENST00000378825 TBC1D32Q96NH3 1257 aa23.61■■□□□ 1.37
CCDC3-201ENST00000378825 GZF1Q9H116 711 aaPredicted RBP23.61■■□□□ 1.37
CCDC3-201ENST00000378825 SENP3Q9H4L4 574 aaPredicted RBP23.61■■□□□ 1.37
CCDC3-201ENST00000378825 CFAP65Q6ZU64 1925 aaKnown RBP23.59■■□□□ 1.37
CCDC3-201ENST00000378825 STAC3Q96MF2 364 aa23.59■■□□□ 1.37
CCDC3-201ENST00000378825 NUTM2DQ5VT03 806 aaPredicted RBP23.58■■□□□ 1.36
CCDC3-201ENST00000378825 SLC12A5Q9H2X9 1139 aa23.58■■□□□ 1.36
CCDC3-201ENST00000378825 KIDINS220Q9ULH0 1771 aa23.58■■□□□ 1.36
CCDC3-201ENST00000378825 OSCARQ8IYS5 282 aa23.56■■□□□ 1.36
CCDC3-201ENST00000378825 MORC1Q86VD1 984 aa23.56■■□□□ 1.36
CCDC3-201ENST00000378825 PANK2Q9BZ23 570 aa23.56■■□□□ 1.36
CCDC3-201ENST00000378825 TRAK1Q9UPV9 953 aa23.56■■□□□ 1.36
CCDC3-201ENST00000378825 POLR3AO14802 1390 aaPredicted RBP23.55■■□□□ 1.36
CCDC3-201ENST00000378825 RAPGEF3O95398 923 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 NOS1P29475 1434 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 CD109Q6YHK3 1445 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 PMFBP1Q8TBY8 1022 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 PPRC1Q5VV67 1664 aaKnown RBP23.54■■□□□ 1.36
CCDC3-201ENST00000378825 TMEM132EQ6IEE7 984 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 EFCAB6Q5THR3 1501 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 NSD3Q9BZ95 1437 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 ABCA6Q8N139 1617 aa23.54■■□□□ 1.36
CCDC3-201ENST00000378825 UPF2Q9HAU5 1272 aaKnown RBP23.53■■□□□ 1.36
CCDC3-201ENST00000378825 ZNF518AQ6AHZ1 1483 aa23.53■■□□□ 1.36
CCDC3-201ENST00000378825 RUNDC1Q96C34 613 aa23.53■■□□□ 1.36
CCDC3-201ENST00000378825 MAP3K4Q9Y6R4 1608 aa23.52■■□□□ 1.36
CCDC3-201ENST00000378825 XRCC6P12956 609 aaKnown RBP eCLIP23.52■■□□□ 1.36
CCDC3-201ENST00000378825 SHPRHQ149N8 1683 aa23.52■■□□□ 1.36
CCDC3-201ENST00000378825 NINLQ9Y2I6 1382 aa23.52■■□□□ 1.35
CCDC3-201ENST00000378825 MTHFSP49914 203 aa23.51■■□□□ 1.35
CCDC3-201ENST00000378825 MFAP1P55081 439 aaKnown RBP23.51■■□□□ 1.35
CCDC3-201ENST00000378825 MROH2AA6NES4 1674 aa23.51■■□□□ 1.35
CCDC3-201ENST00000378825 TSR2Q969E8 191 aaKnown RBP23.5■■□□□ 1.35
CCDC3-201ENST00000378825 RSPH6AQ9H0K4 717 aa23.5■■□□□ 1.35
CCDC3-201ENST00000378825 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
CCDC3-201ENST00000378825 NPATQ14207 1427 aa23.49■■□□□ 1.35
CCDC3-201ENST00000378825 UBE2Q2Q8WVN8 375 aa23.48■■□□□ 1.35
CCDC3-201ENST00000378825 KIF1BO60333 1816 aa23.48■■□□□ 1.35
CCDC3-201ENST00000378825 NGEFQ8N5V2 710 aa23.48■■□□□ 1.35
CCDC3-201ENST00000378825 MYOM2P54296 1465 aa23.47■■□□□ 1.35
CCDC3-201ENST00000378825 MCM4P33991 863 aa23.47■■□□□ 1.35
CCDC3-201ENST00000378825 IQSEC2Q5JU85 1478 aa23.47■■□□□ 1.35
CCDC3-201ENST00000378825 RWDD1Q9H446 243 aaPredicted RBP23.46■■□□□ 1.35
CCDC3-201ENST00000378825 POGZQ7Z3K3 1410 aa23.46■■□□□ 1.35
CCDC3-201ENST00000378825 MVPQ14764 893 aaKnown RBP23.45■■□□□ 1.34
CCDC3-201ENST00000378825 L1TD1Q5T7N2 865 aaKnown RBP23.45■■□□□ 1.34
CCDC3-201ENST00000378825 C22orf23Q9BZE7 217 aa23.44■■□□□ 1.34
CCDC3-201ENST00000378825 WDR63Q8IWG1 891 aa23.43■■□□□ 1.34
CCDC3-201ENST00000378825 FRMPD1Q5SYB0 1578 aa23.43■■□□□ 1.34
CCDC3-201ENST00000378825 KIAA1210Q9ULL0 1709 aa23.42■■□□□ 1.34
CCDC3-201ENST00000378825 GOLGA6L3A6NEY3 463 aa23.42■■□□□ 1.34
CCDC3-201ENST00000378825 FTSJ3Q8IY81 847 aaKnown RBP23.42■■□□□ 1.34
CCDC3-201ENST00000378825 U2AF1L5P0DN76 240 aaPredicted RBP23.42■■□□□ 1.34
CCDC3-201ENST00000378825 U2AF1Q01081 240 aaKnown RBP eCLIP23.42■■□□□ 1.34
CCDC3-201ENST00000378825 FSD2A1L4K1 749 aa23.41■■□□□ 1.34
CCDC3-201ENST00000378825 SAFB2Q14151 953 aaKnown RBP eCLIP23.4■■□□□ 1.34
CCDC3-201ENST00000378825 DZIP1LQ8IYY4 767 aaKnown RBP23.4■■□□□ 1.34
CCDC3-201ENST00000378825 C14orf93Q9H972 538 aaKnown RBP23.39■■□□□ 1.33
CCDC3-201ENST00000378825 ADGRB3O60242 1522 aa23.39■■□□□ 1.33
CCDC3-201ENST00000378825 TRAK2O60296 914 aa23.39■■□□□ 1.33
CCDC3-201ENST00000378825 ZKSCAN2Q63HK3 967 aa23.39■■□□□ 1.33
CCDC3-201ENST00000378825 LMTK2Q8IWU2 1503 aa23.39■■□□□ 1.33
CCDC3-201ENST00000378825 TRIM27P14373 513 aa23.38■■□□□ 1.33
CCDC3-201ENST00000378825 EXOSC9Q06265 439 aaKnown RBP23.38■■□□□ 1.33
CCDC3-201ENST00000378825 IFT172Q9UG01 1749 aa23.38■■□□□ 1.33
CCDC3-201ENST00000378825 NRXN1Q9ULB1 1477 aa23.38■■□□□ 1.33
CCDC3-201ENST00000378825 SMC4Q9NTJ3 1288 aa23.38■■□□□ 1.33
CCDC3-201ENST00000378825 ITPRIPQ8IWB1 547 aa23.37■■□□□ 1.33
CCDC3-201ENST00000378825 NEURL4Q96JN8 1562 aa23.37■■□□□ 1.33
CCDC3-201ENST00000378825 MLH3Q9UHC1 1453 aa23.36■■□□□ 1.33
CCDC3-201ENST00000378825 SSH1Q8WYL5 1049 aa23.35■■□□□ 1.33
CCDC3-201ENST00000378825 MYH16Q9H6N6 1097 aa23.35■■□□□ 1.33
CCDC3-201ENST00000378825 CHMP5Q9NZZ3 219 aa23.35■■□□□ 1.33
CCDC3-201ENST00000378825 HECW2Q9P2P5 1572 aa23.34■■□□□ 1.33
CCDC3-201ENST00000378825 SLC24A1O60721 1099 aa23.33■■□□□ 1.33
CCDC3-201ENST00000378825 ZNF692Q9BU19 519 aaPredicted RBP23.33■■□□□ 1.33
CCDC3-201ENST00000378825 AAMPQ13685 434 aa23.33■■□□□ 1.33
CCDC3-201ENST00000378825 CCDC27Q2M243 656 aa23.32■■□□□ 1.32
CCDC3-201ENST00000378825 ABCC3O15438 1527 aa23.32■■□□□ 1.32
CCDC3-201ENST00000378825 STK26Q9P289 416 aa23.32■■□□□ 1.32
CCDC3-201ENST00000378825 U2SURPO15042 1029 aaKnown RBP23.32■■□□□ 1.32
CCDC3-201ENST00000378825 CFAP53Q96M91 514 aa23.31■■□□□ 1.32
CCDC3-201ENST00000378825 NAP1L5Q96NT1 182 aaPredicted RBP23.31■■□□□ 1.32
CCDC3-201ENST00000378825 NOB1Q9ULX3 412 aaKnown RBP23.31■■□□□ 1.32
CCDC3-201ENST00000378825 ZMYM3Q14202 1370 aa23.3■■□□□ 1.32
CCDC3-201ENST00000378825 SBNO2Q9Y2G9 1366 aa23.3■■□□□ 1.32
CCDC3-201ENST00000378825 TMEM57Q8N5G2 664 aa23.3■■□□□ 1.32
CCDC3-201ENST00000378825 IDI1Q13907 227 aa23.3■■□□□ 1.32
CCDC3-201ENST00000378825 LNPKQ9C0E8 428 aa23.29■■□□□ 1.32
CCDC3-201ENST00000378825 FOXD4L1Q9NU39 408 aa23.29■■□□□ 1.32
CCDC3-201ENST00000378825 CABP2Q9NPB3 220 aa23.28■■□□□ 1.32
CCDC3-201ENST00000378825 ADGRB1O14514 1584 aa23.28■■□□□ 1.32
CCDC3-201ENST00000378825 TRIM35Q9UPQ4 493 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms