RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 FOXD4L6Q3SYB3 417 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-203ENST00000378169 FOXD4L3Q6VB84 417 aaPredicted RBP16.34■□□□□ 0.21
NPHP4-203ENST00000378169 GPATCH3Q96I76 525 aa16.34■□□□□ 0.21
NPHP4-203ENST00000378169 DISP3Q9P2K9 1392 aa16.34■□□□□ 0.21
NPHP4-203ENST00000378169 PDE3AQ14432 1141 aa16.34■□□□□ 0.21
NPHP4-203ENST00000378169 TWISTNBQ3B726 338 aaPredicted RBP16.33■□□□□ 0.21
NPHP4-203ENST00000378169 ST18O60284 1047 aa16.33■□□□□ 0.2
NPHP4-203ENST00000378169 ESCO1Q5FWF5 840 aa16.33■□□□□ 0.2
NPHP4-203ENST00000378169 THUMPD2Q9BTF0 503 aaKnown RBP16.33■□□□□ 0.2
NPHP4-203ENST00000378169 NOB1Q9ULX3 412 aaKnown RBP16.33■□□□□ 0.2
NPHP4-203ENST00000378169 RTEL1-TNFRSF6BF6WH68 1400 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 PDZRN3Q9UPQ7 1066 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 FANCAO15360 1455 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 SLFN5Q08AF3 891 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 NLRP2Q9NX02 1062 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 RAPGEF6Q8TEU7 1601 aa16.32■□□□□ 0.2
NPHP4-203ENST00000378169 TTC5Q8N0Z6 440 aa16.3■□□□□ 0.2
NPHP4-203ENST00000378169 CCDC61Q9Y6R9 512 aa16.3■□□□□ 0.2
NPHP4-203ENST00000378169 EVA1CP58658 441 aa16.3■□□□□ 0.2
NPHP4-203ENST00000378169 AIMP1Q12904 312 aaKnown RBP16.3■□□□□ 0.2
NPHP4-203ENST00000378169 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
NPHP4-203ENST00000378169 THEMISQ8N1K5 641 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-203ENST00000378169 WDR63Q8IWG1 891 aa16.29■□□□□ 0.2
NPHP4-203ENST00000378169 RAPGEF4Q8WZA2 1011 aa16.29■□□□□ 0.2
NPHP4-203ENST00000378169 NUDT16Q96DE0 195 aaKnown RBP16.29■□□□□ 0.2
NPHP4-203ENST00000378169 C22orf23Q9BZE7 217 aa16.29■□□□□ 0.2
NPHP4-203ENST00000378169 NEXNQ0ZGT2 675 aa16.28■□□□□ 0.2
NPHP4-203ENST00000378169 ATAD2Q6PL18 1390 aa16.28■□□□□ 0.2
NPHP4-203ENST00000378169 GOLGA6L3A6NEY3 463 aa16.28■□□□□ 0.2
NPHP4-203ENST00000378169 TMPOP42166 694 aaKnown RBP16.28■□□□□ 0.2
NPHP4-203ENST00000378169 NOS1P29475 1434 aa16.28■□□□□ 0.2
NPHP4-203ENST00000378169 USP35Q9P2H5 1018 aa16.28■□□□□ 0.2
NPHP4-203ENST00000378169 ZNF692Q9BU19 519 aaPredicted RBP16.27■□□□□ 0.2
NPHP4-203ENST00000378169 CEBPAP49715 358 aaPredicted RBP16.27■□□□□ 0.2
NPHP4-203ENST00000378169 BACH2Q9BYV9 841 aa16.27■□□□□ 0.2
NPHP4-203ENST00000378169 ANO2Q9NQ90 1003 aa16.27■□□□□ 0.2
NPHP4-203ENST00000378169 ATF3P18847 181 aa16.27■□□□□ 0.19
NPHP4-203ENST00000378169 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.19
NPHP4-203ENST00000378169 ZNF428Q96B54 188 aa16.27■□□□□ 0.19
NPHP4-203ENST00000378169 DHX29Q7Z478 1369 aaKnown RBP16.27■□□□□ 0.19
NPHP4-203ENST00000378169 FBLN1P23142 703 aa16.26■□□□□ 0.19
NPHP4-203ENST00000378169 CTTNBP2Q8WZ74 1663 aa16.26■□□□□ 0.19
NPHP4-203ENST00000378169 SLC4A2P04920 1241 aa16.25■□□□□ 0.19
NPHP4-203ENST00000378169 SYTL4Q96C24 671 aaPredicted RBP16.25■□□□□ 0.19
NPHP4-203ENST00000378169 HSP90B1P14625 803 aaKnown RBP16.25■□□□□ 0.19
NPHP4-203ENST00000378169 NME9Q86XW9 330 aa16.25■□□□□ 0.19
NPHP4-203ENST00000378169 DCTN1Q14203 1278 aa16.25■□□□□ 0.19
NPHP4-203ENST00000378169 PROSER2Q86WR7 435 aaPredicted RBP16.25■□□□□ 0.19
NPHP4-203ENST00000378169 RBM33Q96EV2 1170 aaKnown RBP16.25■□□□□ 0.19
NPHP4-203ENST00000378169 REC8O95072 547 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 XPCQ01831 940 aaPredicted RBP16.24■□□□□ 0.19
NPHP4-203ENST00000378169 TRAPPC8Q9Y2L5 1435 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 AAMPQ13685 434 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 DIAPH3Q9NSV4 1193 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 TULP1O00294 542 aaPredicted RBP16.24■□□□□ 0.19
NPHP4-203ENST00000378169 MSNP26038 577 aaKnown RBP16.24■□□□□ 0.19
NPHP4-203ENST00000378169 GSE1Q14687 1217 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 PLCH2O75038 1416 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 SYCP2Q9BX26 1530 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 ADAMTS12P58397 1594 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 GNL2Q13823 731 aaKnown RBP16.24■□□□□ 0.19
NPHP4-203ENST00000378169 GAS2L2Q8NHY3 880 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 EMILIN1Q9Y6C2 1016 aa16.24■□□□□ 0.19
NPHP4-203ENST00000378169 C14orf93Q9H972 538 aaKnown RBP16.23■□□□□ 0.19
NPHP4-203ENST00000378169 DDX49Q9Y6V7 483 aaKnown RBP16.23■□□□□ 0.19
NPHP4-203ENST00000378169 WDR62O43379 1518 aa16.23■□□□□ 0.19
NPHP4-203ENST00000378169 FCHSD2O94868 740 aa16.23■□□□□ 0.19
NPHP4-203ENST00000378169 MVPQ14764 893 aaKnown RBP16.23■□□□□ 0.19
NPHP4-203ENST00000378169 UBTFL1P0CB47 393 aaPredicted RBP16.22■□□□□ 0.19
NPHP4-203ENST00000378169 GTF2E1P29083 439 aaPredicted RBP16.22■□□□□ 0.19
NPHP4-203ENST00000378169 GLIPR1L2Q4G1C9 344 aa16.22■□□□□ 0.19
NPHP4-203ENST00000378169 KIAA0556O60303 1618 aa16.22■□□□□ 0.19
NPHP4-203ENST00000378169 SCAF11Q99590 1463 aaKnown RBP16.22■□□□□ 0.19
NPHP4-203ENST00000378169 IFIT2P09913 472 aaKnown RBP16.22■□□□□ 0.19
NPHP4-203ENST00000378169 NFKBIBQ15653 356 aa16.21■□□□□ 0.19
NPHP4-203ENST00000378169 DUSP27Q5VZP5 1158 aa16.21■□□□□ 0.19
NPHP4-203ENST00000378169 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
NPHP4-203ENST00000378169 GPRASP1Q5JY77 1395 aa16.21■□□□□ 0.19
NPHP4-203ENST00000378169 TCOF1Q13428 1488 aaKnown RBP16.21■□□□□ 0.19
NPHP4-203ENST00000378169 DDX58O95786 925 aaKnown RBP16.21■□□□□ 0.19
NPHP4-203ENST00000378169 TESK2Q96S53 571 aa16.21■□□□□ 0.19
NPHP4-203ENST00000378169 DRC7Q8IY82 874 aa16.2■□□□□ 0.18
NPHP4-203ENST00000378169 ISY1Q9ULR0 285 aaKnown RBP16.2■□□□□ 0.18
NPHP4-203ENST00000378169 DISP1Q96F81 1524 aa16.2■□□□□ 0.18
NPHP4-203ENST00000378169 SSH1Q8WYL5 1049 aa16.2■□□□□ 0.18
NPHP4-203ENST00000378169 CFAP43Q8NDM7 1665 aa16.2■□□□□ 0.18
NPHP4-203ENST00000378169 AMER1Q5JTC6 1135 aaPredicted RBP16.2■□□□□ 0.18
NPHP4-203ENST00000378169 TOMM22Q9NS69 142 aa16.2■□□□□ 0.18
NPHP4-203ENST00000378169 SURF6O75683 361 aaKnown RBP16.19■□□□□ 0.18
NPHP4-203ENST00000378169 RARSP54136 660 aaKnown RBP16.19■□□□□ 0.18
NPHP4-203ENST00000378169 RIC3Q7Z5B4 369 aa16.19■□□□□ 0.18
NPHP4-203ENST00000378169 HDGFL1Q5TGJ6 251 aa16.19■□□□□ 0.18
NPHP4-203ENST00000378169 CCDC30Q5VVM6 783 aa16.19■□□□□ 0.18
NPHP4-203ENST00000378169 TMEM57Q8N5G2 664 aa16.19■□□□□ 0.18
NPHP4-203ENST00000378169 KDM5BQ9UGL1 1544 aa16.19■□□□□ 0.18
NPHP4-203ENST00000378169 PTMSP20962 102 aa16.18■□□□□ 0.18
NPHP4-203ENST00000378169 G3BP1Q13283 466 aaKnown RBP eCLIP16.18■□□□□ 0.18
NPHP4-203ENST00000378169 NFE2L2Q16236 605 aa16.18■□□□□ 0.18
NPHP4-203ENST00000378169 INTS3Q68E01 1043 aaKnown RBP16.18■□□□□ 0.18
NPHP4-203ENST00000378169 MCM10Q7L590 875 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms