RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 CCNB3Q8WWL7 1395 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 PIK3R5Q8WYR1 880 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 SPATA32Q96LK8 384 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 TSPAN18Q96SJ8 248 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 CASKIN1Q8WXD9 1431 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 MAP2K1Q02750 393 aaPredicted RBP10.1□□□□□ -0.79
USP48-203ENST00000374732 CCDC181Q5TID7 509 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 BANK1Q8NDB2 785 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 REREQ9P2R6 1566 aa10.1□□□□□ -0.79
USP48-203ENST00000374732 MAP4K4O95819 1239 aaPredicted RBP10.09□□□□□ -0.79
USP48-203ENST00000374732 ANKRD62A6NC57 917 aa10.09□□□□□ -0.79
USP48-203ENST00000374732 PAX3P23760 479 aa10.09□□□□□ -0.79
USP48-203ENST00000374732 RNF217Q8TC41 542 aa10.09□□□□□ -0.79
USP48-203ENST00000374732 KRBA2Q6ZNG9 492 aa10.09□□□□□ -0.79
USP48-203ENST00000374732 PCF11O94913 1555 aaKnown RBP10.09□□□□□ -0.79
USP48-203ENST00000374732 RETREG2Q8NC44 543 aa10.08□□□□□ -0.8
USP48-203ENST00000374732 FMN1Q68DA7 1419 aa10.08□□□□□ -0.8
USP48-203ENST00000374732 ZNF280DQ6N043 979 aa10.08□□□□□ -0.8
USP48-203ENST00000374732 SDR16C5Q8N3Y7 309 aa10.08□□□□□ -0.8
USP48-203ENST00000374732 MAGI2Q86UL8 1455 aa10.08□□□□□ -0.8
USP48-203ENST00000374732 CCDC184Q52MB2 194 aa10.07□□□□□ -0.8
USP48-203ENST00000374732 SMAP1Q8IYB5 467 aaPredicted RBP10.07□□□□□ -0.8
USP48-203ENST00000374732 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.07□□□□□ -0.82e-6■■■■■ 46.1
USP48-203ENST00000374732 ADGRL1O94910 1474 aa10.07□□□□□ -0.8
USP48-203ENST00000374732 EPB41L2O43491 1005 aaKnown RBP10.07□□□□□ -0.8
USP48-203ENST00000374732 RAB11FIP3O75154 756 aa10.07□□□□□ -0.8
USP48-203ENST00000374732 DDX46Q7L014 1031 aaKnown RBP10.07□□□□□ -0.8
USP48-203ENST00000374732 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP48-203ENST00000374732 IFNLR1Q8IU57 520 aaPredicted RBP10.06□□□□□ -0.8
USP48-203ENST00000374732 IQSEC2Q5JU85 1478 aa10.06□□□□□ -0.8
USP48-203ENST00000374732 NBPF6Q5VWK0 638 aa10.06□□□□□ -0.8
USP48-203ENST00000374732 NBPF5PQ86XG9 351 aaPredicted RBP10.06□□□□□ -0.8
USP48-203ENST00000374732 NBPF4Q96M43 638 aa10.06□□□□□ -0.8
USP48-203ENST00000374732 ANP32CO43423 234 aa10.05□□□□□ -0.8
USP48-203ENST00000374732 NOP58Q9Y2X3 529 aaKnown RBP10.05□□□□□ -0.8
USP48-203ENST00000374732 DHX57Q6P158 1386 aaKnown RBP10.04□□□□□ -0.8
USP48-203ENST00000374732 PROCA1Q8NCQ7 364 aaPredicted RBP10.04□□□□□ -0.8
USP48-203ENST00000374732 ZFYVE27Q5T4F4 411 aa10.04□□□□□ -0.8
USP48-203ENST00000374732 VTI1AQ96AJ9 217 aa10.04□□□□□ -0.8
USP48-203ENST00000374732 ARHGEF40Q8TER5 1519 aa10.03□□□□□ -0.8
USP48-203ENST00000374732 HDAC1Q13547 482 aaPredicted RBP10.03□□□□□ -0.8
USP48-203ENST00000374732 FHOD3Q2V2M9 1422 aa10.03□□□□□ -0.8
USP48-203ENST00000374732 TAF3Q5VWG9 929 aa10.03□□□□□ -0.8
USP48-203ENST00000374732 BCORL1Q5H9F3 1711 aa10.03□□□□□ -0.8
USP48-203ENST00000374732 SSR1P43307 286 aaKnown RBP10.03□□□□□ -0.8
USP48-203ENST00000374732 NBPF10Q6P3W6 841 aaKnown RBP10.03□□□□□ -0.8
USP48-203ENST00000374732 GEMIN8Q9NWZ8 242 aaKnown RBP10.02□□□□□ -0.8
USP48-203ENST00000374732 PPP1R1BQ9UD71 204 aaPredicted RBP10.02□□□□□ -0.8
USP48-203ENST00000374732 LONRF3Q496Y0 759 aa10.02□□□□□ -0.81
USP48-203ENST00000374732 BORCS6Q96GS4 357 aa10.02□□□□□ -0.81
USP48-203ENST00000374732 NRDCO43847 1150 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 FAM135AQ9P2D6 1515 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 HECW2Q9P2P5 1572 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 MTA1Q13330 715 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 ZKSCAN2Q63HK3 967 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 CCDC97Q96F63 343 aaPredicted RBP10.01□□□□□ -0.81
USP48-203ENST00000374732 TMX4Q9H1E5 349 aaPredicted RBP10.01□□□□□ -0.81
USP48-203ENST00000374732 TNNT2P45379 298 aaPredicted RBP10.01□□□□□ -0.81
USP48-203ENST00000374732 FAM69CQ0P6D2 419 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 CLUAP1Q96AJ1 413 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 WASHC2AQ641Q2 1341 aa10.01□□□□□ -0.81
USP48-203ENST00000374732 IPO8O15397 1037 aaKnown RBP10□□□□□ -0.81
USP48-203ENST00000374732 LMOD3Q0VAK6 560 aa10□□□□□ -0.81
USP48-203ENST00000374732 UTP14CQ5TAP6 766 aaKnown RBP10□□□□□ -0.81
USP48-203ENST00000374732 ZBTB9Q96C00 473 aa10□□□□□ -0.81
USP48-203ENST00000374732 KLHL42Q9P2K6 505 aa10□□□□□ -0.81
USP48-203ENST00000374732 CXorf38Q8TB03 319 aa10□□□□□ -0.81
USP48-203ENST00000374732 MRVI1Q9Y6F6 885 aa10□□□□□ -0.81
USP48-203ENST00000374732 WDR70Q9NW82 654 aa9.99□□□□□ -0.81
USP48-203ENST00000374732 ANKRD23Q86SG2 305 aa9.99□□□□□ -0.81
USP48-203ENST00000374732 SATB1Q01826 763 aa9.99□□□□□ -0.81
USP48-203ENST00000374732 MSL3Q8N5Y2 521 aaKnown RBP9.99□□□□□ -0.81
USP48-203ENST00000374732 SH3BP5O60239 455 aa9.98□□□□□ -0.81
USP48-203ENST00000374732 HIRIP3Q9BW71 556 aaPredicted RBP9.98□□□□□ -0.81
USP48-203ENST00000374732 RAPGEF6Q8TEU7 1601 aa9.98□□□□□ -0.81
USP48-203ENST00000374732 ZC3H4Q9UPT8 1303 aaKnown RBP9.98□□□□□ -0.81
USP48-203ENST00000374732 FRMPD1Q5SYB0 1578 aa9.98□□□□□ -0.81
USP48-203ENST00000374732 YY1AP1Q9H869 796 aa9.98□□□□□ -0.81
USP48-203ENST00000374732 TTC37Q6PGP7 1564 aa9.97□□□□□ -0.81
USP48-203ENST00000374732 KDM4FA0A1W2PPD8 638 aa9.97□□□□□ -0.81
USP48-203ENST00000374732 SETD5Q9C0A6 1442 aa9.97□□□□□ -0.81
USP48-203ENST00000374732 RPGRIP1LQ68CZ1 1315 aa9.97□□□□□ -0.81
USP48-203ENST00000374732 RICTORQ6R327 1708 aa9.97□□□□□ -0.81
USP48-203ENST00000374732 CCDC18Q5T9S5 1454 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 MAMSTRQ6ZN01 415 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 KCNV2Q8TDN2 545 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 RAI14Q9P0K7 980 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 FRMD4BQ9Y2L6 1034 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 LRRIQ1Q96JM4 1722 aa9.96□□□□□ -0.81
USP48-203ENST00000374732 ERCC3P19447 782 aa9.96□□□□□ -0.82
USP48-203ENST00000374732 CSPP1Q1MSJ5 1256 aa9.96□□□□□ -0.82
USP48-203ENST00000374732 CALR3Q96L12 384 aaKnown RBP9.96□□□□□ -0.82
USP48-203ENST00000374732 PNNQ9H307 717 aaKnown RBP9.96□□□□□ -0.82
USP48-203ENST00000374732 EHBP1L1Q8N3D4 1523 aa9.95□□□□□ -0.82
USP48-203ENST00000374732 CREB3O43889 395 aa9.95□□□□□ -0.82
USP48-203ENST00000374732 GIMAP6Q6P9H5 292 aa9.95□□□□□ -0.82
USP48-203ENST00000374732 TSPOAP1O95153 1857 aa9.95□□□□□ -0.82
USP48-203ENST00000374732 DMTNQ08495 405 aa9.95□□□□□ -0.82
USP48-203ENST00000374732 PAK3O75914 559 aaPredicted RBP9.94□□□□□ -0.82
USP48-203ENST00000374732 NUB1Q9Y5A7 615 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms