RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 ATP1B4Q9UN42 357 aaPredicted RBP10.27□□□□□ -0.77
CSDE1-204ENST00000369530 LRPPRCP42704 1394 aaKnown RBP10.26□□□□□ -0.77
CSDE1-204ENST00000369530 FAM208AQ9UK61 1670 aaKnown RBP10.26□□□□□ -0.77
CSDE1-204ENST00000369530 PARP4Q9UKK3 1724 aaKnown RBP10.26□□□□□ -0.77
CSDE1-204ENST00000369530 SBF2Q86WG5 1849 aa10.25□□□□□ -0.77
CSDE1-204ENST00000369530 AEBP2Q6ZN18 517 aaPredicted RBP10.25□□□□□ -0.77
CSDE1-204ENST00000369530 DMRT2Q9Y5R5 561 aa10.25□□□□□ -0.77
CSDE1-204ENST00000369530 KIF20BQ96Q89 1820 aa10.25□□□□□ -0.77
CSDE1-204ENST00000369530 THEMISQ8N1K5 641 aaPredicted RBP10.25□□□□□ -0.77
CSDE1-204ENST00000369530 RREB1Q92766 1687 aa10.25□□□□□ -0.77
CSDE1-204ENST00000369530 GTF3C3Q9Y5Q9 886 aa10.24□□□□□ -0.77
CSDE1-204ENST00000369530 CICQ96RK0 1608 aaPredicted RBP10.24□□□□□ -0.77
CSDE1-204ENST00000369530 RGPD1P0DJD0 1748 aa10.24□□□□□ -0.77
CSDE1-204ENST00000369530 KCNA6P17658 529 aa10.24□□□□□ -0.77
CSDE1-204ENST00000369530 MPHOSPH9Q99550 1183 aa10.23□□□□□ -0.77
CSDE1-204ENST00000369530 YTHDC2Q9H6S0 1430 aaKnown RBP10.23□□□□□ -0.77
CSDE1-204ENST00000369530 ILDR1Q86SU0 546 aaPredicted RBP10.23□□□□□ -0.77
CSDE1-204ENST00000369530 RGPD5Q99666 1765 aa10.23□□□□□ -0.77
CSDE1-204ENST00000369530 ARID4BQ4LE39 1312 aaPredicted RBP10.22□□□□□ -0.77
CSDE1-204ENST00000369530 ANKARQ7Z5J8 1434 aa10.22□□□□□ -0.77
CSDE1-204ENST00000369530 C1orf167Q5SNV9 1468 aa10.22□□□□□ -0.77
CSDE1-204ENST00000369530 NFAT5O94916 1531 aa10.22□□□□□ -0.77
CSDE1-204ENST00000369530 QSER1Q2KHR3 1735 aa10.22□□□□□ -0.77
CSDE1-204ENST00000369530 MLECQ14165 292 aa10.22□□□□□ -0.77
CSDE1-204ENST00000369530 SBNO2Q9Y2G9 1366 aa10.21□□□□□ -0.77
CSDE1-204ENST00000369530 GLI3P10071 1580 aa10.21□□□□□ -0.77
CSDE1-204ENST00000369530 ADAMTS7Q9UKP4 1686 aa10.21□□□□□ -0.77
CSDE1-204ENST00000369530 COL14A1Q05707 1796 aaKnown RBP10.21□□□□□ -0.77
CSDE1-204ENST00000369530 CHIC2Q9UKJ5 165 aa10.21□□□□□ -0.77
CSDE1-204ENST00000369530 LTN1O94822 1766 aa10.2□□□□□ -0.78
CSDE1-204ENST00000369530 ANP32EQ9BTT0 268 aa10.2□□□□□ -0.78
CSDE1-204ENST00000369530 VIRMAQ69YN4 1812 aaKnown RBP10.2□□□□□ -0.78
CSDE1-204ENST00000369530 CDK12Q9NYV4 1490 aaPredicted RBP10.2□□□□□ -0.78
CSDE1-204ENST00000369530 C14orf93Q9H972 538 aaKnown RBP10.19□□□□□ -0.78
CSDE1-204ENST00000369530 ADGRF5Q8IZF2 1346 aa10.19□□□□□ -0.78
CSDE1-204ENST00000369530 ANKLE2Q86XL3 938 aa10.18□□□□□ -0.78
CSDE1-204ENST00000369530 CCDC144AA2RUR9 1427 aa10.18□□□□□ -0.78
CSDE1-204ENST00000369530 TMEM94Q12767 1356 aa10.18□□□□□ -0.78
CSDE1-204ENST00000369530 POLR3AO14802 1390 aaPredicted RBP10.17□□□□□ -0.78
CSDE1-204ENST00000369530 PLEKHH1Q9ULM0 1364 aa10.16□□□□□ -0.78
CSDE1-204ENST00000369530 ZNF831Q5JPB2 1677 aa10.16□□□□□ -0.78
CSDE1-204ENST00000369530 PKD1L3Q7Z443 1732 aa10.15□□□□□ -0.78
CSDE1-204ENST00000369530 CPSF1Q10570 1443 aaKnown RBP10.14□□□□□ -0.79
CSDE1-204ENST00000369530 LRRC37A3O60309 1634 aa10.14□□□□□ -0.79
CSDE1-204ENST00000369530 SLIT2O94813 1529 aa10.14□□□□□ -0.79
CSDE1-204ENST00000369530 STAC3Q96MF2 364 aa10.14□□□□□ -0.79
CSDE1-204ENST00000369530 NCAPD2Q15021 1401 aa10.14□□□□□ -0.79
CSDE1-204ENST00000369530 PAPPAQ13219 1627 aa10.13□□□□□ -0.79
CSDE1-204ENST00000369530 RGS17Q9UGC6 210 aaPredicted RBP10.13□□□□□ -0.79
CSDE1-204ENST00000369530 RGPD2P0DJD1 1756 aa10.12□□□□□ -0.79
CSDE1-204ENST00000369530 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.12□□□□□ -0.79
CSDE1-204ENST00000369530 SOS2Q07890 1332 aaPredicted RBP10.12□□□□□ -0.79
CSDE1-204ENST00000369530 FAM50AQ14320 339 aaKnown RBP10.12□□□□□ -0.79
CSDE1-204ENST00000369530 CLSPNQ9HAW4 1339 aa10.11□□□□□ -0.79
CSDE1-204ENST00000369530 SIPA1L3O60292 1781 aaPredicted RBP10.1□□□□□ -0.79
CSDE1-204ENST00000369530 NUP188Q5SRE5 1749 aa10.09□□□□□ -0.79
CSDE1-204ENST00000369530 TXNDC2Q86VQ3 553 aa10.09□□□□□ -0.79
CSDE1-204ENST00000369530 LY75O60449 1722 aa10.08□□□□□ -0.8
CSDE1-204ENST00000369530 PNPLA6Q8IY17 1366 aa10.08□□□□□ -0.8
CSDE1-204ENST00000369530 CASZ1Q86V15 1759 aa10.08□□□□□ -0.8
CSDE1-204ENST00000369530 TOGARAM1Q9Y4F4 1720 aa10.07□□□□□ -0.8
CSDE1-204ENST00000369530 ATRNO75882 1429 aa10.07□□□□□ -0.8
CSDE1-204ENST00000369530 BCL9LQ86UU0 1499 aa10.07□□□□□ -0.8
CSDE1-204ENST00000369530 TUBGCP6Q96RT7 1819 aa10.07□□□□□ -0.8
CSDE1-204ENST00000369530 SBNO1A3KN83 1393 aa10.05□□□□□ -0.8
CSDE1-204ENST00000369530 FOXD1Q16676 465 aa10.05□□□□□ -0.8
CSDE1-204ENST00000369530 PRR36Q9H6K5 1346 aa10.05□□□□□ -0.8
CSDE1-204ENST00000369530 MAP2P11137 1827 aaKnown RBP10.04□□□□□ -0.8
CSDE1-204ENST00000369530 NHSQ6T4R5 1651 aa10.04□□□□□ -0.8
CSDE1-204ENST00000369530 SMG6Q86US8 1419 aaKnown RBP10.03□□□□□ -0.8
CSDE1-204ENST00000369530 BRINP3Q76B58 766 aa10.02□□□□□ -0.81
CSDE1-204ENST00000369530 BRD4O60885 1362 aaPredicted RBP10.01□□□□□ -0.81
CSDE1-204ENST00000369530 AMOTL2Q9Y2J4 779 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 OVOS2A0A0J9YW53 1432 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 OVOS2Q6IE36 1432 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 LRP5O75197 1615 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 TAF1LQ8IZX4 1826 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 NBPF8Q3BBV2 869 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 USP19O94966 1318 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 UBR2Q8IWV8 1755 aa10□□□□□ -0.81
CSDE1-204ENST00000369530 TNS3Q68CZ2 1445 aa9.99□□□□□ -0.81
CSDE1-204ENST00000369530 BCL9O00512 1426 aa9.99□□□□□ -0.81
CSDE1-204ENST00000369530 SLC4A1APQ9BWU0 796 aaKnown RBP9.98□□□□□ -0.81
CSDE1-204ENST00000369530 COL5A3P25940 1745 aaPredicted RBP9.98□□□□□ -0.81
CSDE1-204ENST00000369530 DISP2A7MBM2 1401 aa9.98□□□□□ -0.81
CSDE1-204ENST00000369530 VGFO15240 615 aaPredicted RBP9.98□□□□□ -0.81
CSDE1-204ENST00000369530 PUS7Q96PZ0 661 aaKnown RBP9.98□□□□□ -0.81
CSDE1-204ENST00000369530 TESK2Q96S53 571 aa9.98□□□□□ -0.81
CSDE1-204ENST00000369530 USP31Q70CQ4 1352 aa9.98□□□□□ -0.81
CSDE1-204ENST00000369530 KIAA1551Q9HCM1 1747 aa9.98□□□□□ -0.81
CSDE1-204ENST00000369530 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.97□□□□□ -0.811e-10■■□□□ 13.5
CSDE1-204ENST00000369530 C19orf44Q9H6X5 657 aa9.97□□□□□ -0.81
CSDE1-204ENST00000369530 HSPA1LP34931 641 aa9.96□□□□□ -0.81
CSDE1-204ENST00000369530 SLC26A8Q96RN1 970 aa9.96□□□□□ -0.82
CSDE1-204ENST00000369530 CPDO75976 1380 aa9.96□□□□□ -0.82
CSDE1-204ENST00000369530 MSH6P52701 1360 aa9.95□□□□□ -0.82
CSDE1-204ENST00000369530 ITGB4P16144 1822 aa9.95□□□□□ -0.82
CSDE1-204ENST00000369530 EID1Q9Y6B2 187 aa9.94□□□□□ -0.82
CSDE1-204ENST00000369530 JCADQ9P266 1359 aa9.94□□□□□ -0.82
CSDE1-204ENST00000369530 USP6P35125 1406 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms