RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 EIF4G3O43432 1585 aaKnown RBP13.52□□□□□ -0.25
YBX3-204ENST00000366290 WDR97A6NE52 1622 aa13.51□□□□□ -0.25
YBX3-204ENST00000366290 AQRO60306 1485 aaKnown RBP eCLIP13.51□□□□□ -0.251e-6■■■■□ 26.1
YBX3-204ENST00000366290 FGD5Q6ZNL6 1462 aa13.51□□□□□ -0.25
YBX3-204ENST00000366290 SKIV2LQ15477 1246 aaKnown RBP13.51□□□□□ -0.25
YBX3-204ENST00000366290 SOGA1O94964 1423 aa13.49□□□□□ -0.25
YBX3-204ENST00000366290 MYSM1Q5VVJ2 828 aa13.49□□□□□ -0.25
YBX3-204ENST00000366290 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
YBX3-204ENST00000366290 TBC1D2Q9BYX2 928 aa13.49□□□□□ -0.25
YBX3-204ENST00000366290 RAD54L2Q9Y4B4 1467 aa13.48□□□□□ -0.25
YBX3-204ENST00000366290 DIXDC1Q155Q3 683 aa13.48□□□□□ -0.25
YBX3-204ENST00000366290 SWT1Q5T5J6 900 aaKnown RBP13.48□□□□□ -0.25
YBX3-204ENST00000366290 POLR3EQ9NVU0 708 aa13.47□□□□□ -0.25
YBX3-204ENST00000366290 RDH13Q8NBN7 331 aa13.46□□□□□ -0.25
YBX3-204ENST00000366290 CYB5RLQ6IPT4 315 aa13.45□□□□□ -0.26
YBX3-204ENST00000366290 SPIRE2Q8WWL2 714 aa13.45□□□□□ -0.26
YBX3-204ENST00000366290 CHD1O14646 1710 aa13.44□□□□□ -0.26
YBX3-204ENST00000366290 TOP2BQ02880 1626 aa13.44□□□□□ -0.26
YBX3-204ENST00000366290 BIVM-ERCC5R4GMW8 1640 aa13.44□□□□□ -0.26
YBX3-204ENST00000366290 PPP4CP60510 307 aa13.44□□□□□ -0.26
YBX3-204ENST00000366290 PROCA1Q8NCQ7 364 aaPredicted RBP13.44□□□□□ -0.26
YBX3-204ENST00000366290 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
YBX3-204ENST00000366290 CLK2P49760 499 aaKnown RBP13.43□□□□□ -0.26
YBX3-204ENST00000366290 HDGFP51858 240 aaKnown RBP13.43□□□□□ -0.26
YBX3-204ENST00000366290 IFFO2Q5TF58 517 aa13.43□□□□□ -0.26
YBX3-204ENST00000366290 NUTM1Q86Y26 1132 aa13.43□□□□□ -0.26
YBX3-204ENST00000366290 WRNQ14191 1432 aaPredicted RBP eCLIP13.42□□□□□ -0.26
YBX3-204ENST00000366290 ITGBL1O95965 494 aaPredicted RBP13.42□□□□□ -0.26
YBX3-204ENST00000366290 RSPH4AQ5TD94 716 aa13.42□□□□□ -0.26
YBX3-204ENST00000366290 ABCA10Q8WWZ4 1543 aa13.42□□□□□ -0.26
YBX3-204ENST00000366290 RNF40O75150 1001 aa13.41□□□□□ -0.26
YBX3-204ENST00000366290 TDRD9Q8NDG6 1382 aaKnown RBP13.41□□□□□ -0.26
YBX3-204ENST00000366290 ARAP1Q96P48 1450 aa13.41□□□□□ -0.26
YBX3-204ENST00000366290 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
YBX3-204ENST00000366290 SLC10A3P09131 477 aa13.4□□□□□ -0.26
YBX3-204ENST00000366290 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.39□□□□□ -0.27
YBX3-204ENST00000366290 LIMD1Q9UGP4 676 aa13.39□□□□□ -0.27
YBX3-204ENST00000366290 GCGRP47871 477 aa13.38□□□□□ -0.27
YBX3-204ENST00000366290 SLC4A3P48751 1232 aa13.38□□□□□ -0.27
YBX3-204ENST00000366290 RIC3Q7Z5B4 369 aa13.38□□□□□ -0.27
YBX3-204ENST00000366290 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
YBX3-204ENST00000366290 ABCA5Q8WWZ7 1642 aa13.38□□□□□ -0.27
YBX3-204ENST00000366290 GRIN2BQ13224 1484 aa13.37□□□□□ -0.27
YBX3-204ENST00000366290 MAGI1Q96QZ7 1491 aaPredicted RBP13.37□□□□□ -0.27
YBX3-204ENST00000366290 MOXD2PA6NHM9 499 aa13.36□□□□□ -0.27
YBX3-204ENST00000366290 KDM4AO75164 1064 aa13.36□□□□□ -0.27
YBX3-204ENST00000366290 APLP1P51693 650 aa13.36□□□□□ -0.27
YBX3-204ENST00000366290 GAPVD1Q14C86 1478 aa13.36□□□□□ -0.27
YBX3-204ENST00000366290 SPTLC1O15269 473 aa13.35□□□□□ -0.27
YBX3-204ENST00000366290 RSBN1LQ6PCB5 846 aaPredicted RBP13.35□□□□□ -0.27
YBX3-204ENST00000366290 SNAPC4Q5SXM2 1469 aa13.34□□□□□ -0.27
YBX3-204ENST00000366290 PBRM1Q86U86 1689 aa13.34□□□□□ -0.27
YBX3-204ENST00000366290 NDUFV2P19404 249 aa13.33□□□□□ -0.28
YBX3-204ENST00000366290 USP46P62068 366 aa13.33□□□□□ -0.28
YBX3-204ENST00000366290 FLIIQ13045 1269 aa13.33□□□□□ -0.28
YBX3-204ENST00000366290 CLASP1Q7Z460 1538 aa13.33□□□□□ -0.28
YBX3-204ENST00000366290 TUSC1Q2TAM9 212 aa13.32□□□□□ -0.28
YBX3-204ENST00000366290 NECTIN2Q92692 538 aa13.32□□□□□ -0.28
YBX3-204ENST00000366290 SYNJ2O15056 1496 aa13.31□□□□□ -0.28
YBX3-204ENST00000366290 GJA5P36382 358 aa13.31□□□□□ -0.28
YBX3-204ENST00000366290 TJAP1Q5JTD0 557 aa13.31□□□□□ -0.28
YBX3-204ENST00000366290 A0A0G2JS52 829 aa13.3□□□□□ -0.28
YBX3-204ENST00000366290 HOXA2O43364 376 aa13.3□□□□□ -0.28
YBX3-204ENST00000366290 CFHP08603 1231 aa13.29□□□□□ -0.28
YBX3-204ENST00000366290 KCNC4Q03721 635 aa13.29□□□□□ -0.28
YBX3-204ENST00000366290 CSPP1Q1MSJ5 1256 aa13.29□□□□□ -0.28
YBX3-204ENST00000366290 MTRQ99707 1265 aa13.29□□□□□ -0.28
YBX3-204ENST00000366290 RFC5P40937 340 aa13.28□□□□□ -0.28
YBX3-204ENST00000366290 FBXO31Q5XUX0 539 aaPredicted RBP13.28□□□□□ -0.28
YBX3-204ENST00000366290 PPP2R2DQ66LE6 453 aa13.27□□□□□ -0.29
YBX3-204ENST00000366290 CHMP7Q8WUX9 453 aaPredicted RBP13.27□□□□□ -0.29
YBX3-204ENST00000366290 PCDHB15Q9Y5E8 787 aa13.27□□□□□ -0.29
YBX3-204ENST00000366290 ERICH3Q5RHP9 1530 aa13.26□□□□□ -0.29
YBX3-204ENST00000366290 ZMYND15Q9H091 742 aa13.26□□□□□ -0.29
YBX3-204ENST00000366290 FDX1P10109 184 aa13.25□□□□□ -0.29
YBX3-204ENST00000366290 FUT2Q10981 343 aa13.25□□□□□ -0.29
YBX3-204ENST00000366290 QPCTQ16769 361 aa13.25□□□□□ -0.29
YBX3-204ENST00000366290 HLA-CQ95604 372 aa13.25□□□□□ -0.29
YBX3-204ENST00000366290 LILRB3O75022 631 aa13.24□□□□□ -0.29
YBX3-204ENST00000366290 MCM6Q14566 821 aa13.24□□□□□ -0.29
YBX3-204ENST00000366290 ADAMTS12P58397 1594 aa13.24□□□□□ -0.29
YBX3-204ENST00000366290 GUCA2AQ02747 115 aa13.23□□□□□ -0.29
YBX3-204ENST00000366290 KMT5BQ4FZB7 885 aa13.23□□□□□ -0.29
YBX3-204ENST00000366290 IL21Q9HBE4 155 aa13.23□□□□□ -0.29
YBX3-204ENST00000366290 GRIPAP1Q4V328 841 aa13.22□□□□□ -0.29
YBX3-204ENST00000366290 ZNF516Q92618 1163 aa13.22□□□□□ -0.29
YBX3-204ENST00000366290 PCDHGC3Q9UN70 934 aa13.22□□□□□ -0.29
YBX3-204ENST00000366290 PRPF38BQ5VTL8 546 aaKnown RBP13.21□□□□□ -0.29
YBX3-204ENST00000366290 CABLES1Q8TDN4 633 aa13.21□□□□□ -0.29
YBX3-204ENST00000366290 PRR14Q9BWN1 585 aa13.21□□□□□ -0.29
YBX3-204ENST00000366290 FHAD1B1AJZ9 1412 aa13.21□□□□□ -0.3
YBX3-204ENST00000366290 NUTM2BA6NNL0 878 aaPredicted RBP13.2□□□□□ -0.3
YBX3-204ENST00000366290 NUTM2EB1AL46 878 aaPredicted RBP13.2□□□□□ -0.3
YBX3-204ENST00000366290 TMEM259Q4ZIN3 620 aa13.2□□□□□ -0.3
YBX3-204ENST00000366290 NUTM2DQ5VT03 806 aaPredicted RBP13.2□□□□□ -0.3
YBX3-204ENST00000366290 NUTM2AQ8IVF1 878 aaPredicted RBP13.2□□□□□ -0.3
YBX3-204ENST00000366290 BANK1Q8NDB2 785 aa13.2□□□□□ -0.3
YBX3-204ENST00000366290 ZBTB3Q9H5J0 574 aa13.2□□□□□ -0.3
YBX3-204ENST00000366290 GRIN2AQ12879 1464 aa13.2□□□□□ -0.3
YBX3-204ENST00000366290 HRCP23327 699 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms