RNA–Protein interactions for RNA: ENST00000366216.6

CSNK1E-202, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 1,005 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-202ENST00000366216 KIF1BO60333 1816 aa16.72■□□□□ 0.27
CSNK1E-202ENST00000366216 SOS2Q07890 1332 aaPredicted RBP16.71■□□□□ 0.27
CSNK1E-202ENST00000366216 FAM50AQ14320 339 aaKnown RBP16.71■□□□□ 0.27
CSNK1E-202ENST00000366216 BCL9LQ86UU0 1499 aa16.71■□□□□ 0.27
CSNK1E-202ENST00000366216 BLMP54132 1417 aaPredicted RBP16.7■□□□□ 0.26
CSNK1E-202ENST00000366216 GLI3P10071 1580 aa16.68■□□□□ 0.26
CSNK1E-202ENST00000366216 MYOM2P54296 1465 aa16.68■□□□□ 0.26
CSNK1E-202ENST00000366216 ORAI2Q96SN7 254 aa16.68■□□□□ 0.26
CSNK1E-202ENST00000366216 ZEB1P37275 1124 aaPredicted RBP16.66■□□□□ 0.26
CSNK1E-202ENST00000366216 NEXMIFQ5QGS0 1516 aa16.65■□□□□ 0.26
CSNK1E-202ENST00000366216 GJD4Q96KN9 370 aaPredicted RBP16.65■□□□□ 0.26
CSNK1E-202ENST00000366216 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
CSNK1E-202ENST00000366216 NUP155O75694 1391 aa16.63■□□□□ 0.25
CSNK1E-202ENST00000366216 ROBO2Q9HCK4 1378 aa16.63■□□□□ 0.25
CSNK1E-202ENST00000366216 RALGAPBQ86X10 1494 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 PXDNQ92626 1479 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 DEFB132Q7Z7B7 95 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 CLTCL1P53675 1640 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 PLCH1Q4KWH8 1693 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 NWD2Q9ULI1 1742 aa16.62■□□□□ 0.25
CSNK1E-202ENST00000366216 ZNF326Q5BKZ1 582 aaKnown RBP16.61■□□□□ 0.25
CSNK1E-202ENST00000366216 USP32Q8NFA0 1604 aa16.59■□□□□ 0.25
CSNK1E-202ENST00000366216 SF3B2Q13435 895 aaKnown RBP16.59■□□□□ 0.25
CSNK1E-202ENST00000366216 ROCK1Q13464 1354 aa16.59■□□□□ 0.25
CSNK1E-202ENST00000366216 CDC42BPGQ6DT37 1551 aa16.59■□□□□ 0.25
CSNK1E-202ENST00000366216 RGPD1P0DJD0 1748 aa16.59■□□□□ 0.25
CSNK1E-202ENST00000366216 CCER1Q8TC90 406 aaPredicted RBP16.58■□□□□ 0.24
CSNK1E-202ENST00000366216 SLIT2O94813 1529 aa16.58■□□□□ 0.24
CSNK1E-202ENST00000366216 RGPD8O14715 1765 aaPredicted RBP16.57■□□□□ 0.24
CSNK1E-202ENST00000366216 PPLO60437 1756 aa16.57■□□□□ 0.24
CSNK1E-202ENST00000366216 ABCA3Q99758 1704 aa16.57■□□□□ 0.24
CSNK1E-202ENST00000366216 NPHP3Q7Z494 1330 aa16.57■□□□□ 0.24
CSNK1E-202ENST00000366216 PRAG1Q86YV5 1406 aa16.56■□□□□ 0.24
CSNK1E-202ENST00000366216 ITGAEP38570 1179 aa16.56■□□□□ 0.24
CSNK1E-202ENST00000366216 UNC5CLQ8IV45 518 aa16.56■□□□□ 0.24
CSNK1E-202ENST00000366216 XPCQ01831 940 aaPredicted RBP16.55■□□□□ 0.24
CSNK1E-202ENST00000366216 KIF1AQ12756 1690 aa16.55■□□□□ 0.24
CSNK1E-202ENST00000366216 PSDA5PKW4 1024 aaPredicted RBP16.54■□□□□ 0.24
CSNK1E-202ENST00000366216 HFM1A2PYH4 1435 aa16.53■□□□□ 0.24
CSNK1E-202ENST00000366216 TNS1Q9HBL0 1735 aaKnown RBP16.53■□□□□ 0.24
CSNK1E-202ENST00000366216 ESCO1Q5FWF5 840 aa16.52■□□□□ 0.24
CSNK1E-202ENST00000366216 FMN2Q9NZ56 1722 aa16.51■□□□□ 0.23
CSNK1E-202ENST00000366216 SEPT12Q8IYM1 358 aa16.51■□□□□ 0.23
CSNK1E-202ENST00000366216 FOXO3O43524 673 aa16.5■□□□□ 0.23
CSNK1E-202ENST00000366216 IFT172Q9UG01 1749 aa16.5■□□□□ 0.23
CSNK1E-202ENST00000366216 LRPPRCP42704 1394 aaKnown RBP16.5■□□□□ 0.23
CSNK1E-202ENST00000366216 NRAPQ86VF7 1730 aa16.49■□□□□ 0.23
CSNK1E-202ENST00000366216 RAB3GAP2Q9H2M9 1393 aa16.49■□□□□ 0.23
CSNK1E-202ENST00000366216 BAG6P46379 1132 aa16.48■□□□□ 0.23
CSNK1E-202ENST00000366216 KRT27Q7Z3Y8 459 aa16.48■□□□□ 0.23
CSNK1E-202ENST00000366216 KNDC1Q76NI1 1749 aa16.47■□□□□ 0.23
CSNK1E-202ENST00000366216 CLSPNQ9HAW4 1339 aa16.46■□□□□ 0.23
CSNK1E-202ENST00000366216 ONECUT3O60422 494 aaPredicted RBP16.46■□□□□ 0.23
CSNK1E-202ENST00000366216 VPS72Q15906 364 aa16.46■□□□□ 0.23
CSNK1E-202ENST00000366216 NUTM2FA1L443 756 aa16.45■□□□□ 0.22
CSNK1E-202ENST00000366216 NCBP3Q53F19 620 aaKnown RBP16.45■□□□□ 0.22
CSNK1E-202ENST00000366216 DHX57Q6P158 1386 aaKnown RBP16.45■□□□□ 0.22
CSNK1E-202ENST00000366216 NAIPQ13075 1403 aa16.45■□□□□ 0.22
CSNK1E-202ENST00000366216 SPATA31A3Q5VYP0 1347 aa16.45■□□□□ 0.22
CSNK1E-202ENST00000366216 VGFO15240 615 aaPredicted RBP16.44■□□□□ 0.22
CSNK1E-202ENST00000366216 CCDC144AA2RUR9 1427 aa16.44■□□□□ 0.22
CSNK1E-202ENST00000366216 PLEKHH1Q9ULM0 1364 aa16.43■□□□□ 0.22
CSNK1E-202ENST00000366216 CCDC9Q9Y3X0 531 aaKnown RBP16.43■□□□□ 0.22
CSNK1E-202ENST00000366216 WAPLQ7Z5K2 1190 aa16.42■□□□□ 0.22
CSNK1E-202ENST00000366216 R3HDM1Q15032 1099 aaKnown RBP16.41■□□□□ 0.22
CSNK1E-202ENST00000366216 RREB1Q92766 1687 aa16.4■□□□□ 0.22
CSNK1E-202ENST00000366216 YY1P25490 414 aa16.4■□□□□ 0.22
CSNK1E-202ENST00000366216 HAP1P54257 671 aaPredicted RBP16.4■□□□□ 0.22
CSNK1E-202ENST00000366216 EN1Q05925 392 aaPredicted RBP16.4■□□□□ 0.22
CSNK1E-202ENST00000366216 CABLES1Q8TDN4 633 aa16.4■□□□□ 0.22
CSNK1E-202ENST00000366216 COL14A1Q05707 1796 aaKnown RBP16.39■□□□□ 0.21
CSNK1E-202ENST00000366216 TNS3Q68CZ2 1445 aa16.39■□□□□ 0.21
CSNK1E-202ENST00000366216 NUP188Q5SRE5 1749 aa16.39■□□□□ 0.21
CSNK1E-202ENST00000366216 ADGRB2O60241 1585 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 DISP2A7MBM2 1401 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 THSD7AQ9UPZ6 1657 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 A0A0G2JS52 829 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 MYT1Q01538 1121 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 ADGRF5Q8IZF2 1346 aa16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 ACIN1Q9UKV3 1341 aaKnown RBP16.38■□□□□ 0.21
CSNK1E-202ENST00000366216 RPGRIP1LQ68CZ1 1315 aa16.37■□□□□ 0.21
CSNK1E-202ENST00000366216 TECPR2O15040 1411 aa16.36■□□□□ 0.21
CSNK1E-202ENST00000366216 KRT28Q7Z3Y7 464 aa16.36■□□□□ 0.21
CSNK1E-202ENST00000366216 FAM98CQ17RN3 349 aaKnown RBP16.35■□□□□ 0.21
CSNK1E-202ENST00000366216 STK26Q9P289 416 aa16.35■□□□□ 0.21
CSNK1E-202ENST00000366216 TRPM3Q9HCF6 1732 aaPredicted RBP16.35■□□□□ 0.21
CSNK1E-202ENST00000366216 CRYBG1Q9Y4K1 1723 aa16.34■□□□□ 0.21
CSNK1E-202ENST00000366216 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
CSNK1E-202ENST00000366216 ALS2Q96Q42 1657 aa16.34■□□□□ 0.21
CSNK1E-202ENST00000366216 CHD4Q14839 1912 aa16.33■□□□□ 0.21
CSNK1E-202ENST00000366216 FAM83GA6ND36 823 aa16.33■□□□□ 0.2
CSNK1E-202ENST00000366216 FAM182BQ5T319 152 aa16.33■□□□□ 0.2
CSNK1E-202ENST00000366216 TMEM132EQ6IEE7 984 aa16.33■□□□□ 0.2
CSNK1E-202ENST00000366216 CAMTA1Q9Y6Y1 1673 aa16.33■□□□□ 0.2
CSNK1E-202ENST00000366216 SBNO1A3KN83 1393 aa16.31■□□□□ 0.2
CSNK1E-202ENST00000366216 ARHGEF10O15013 1369 aa16.31■□□□□ 0.2
CSNK1E-202ENST00000366216 ABCC11Q96J66 1382 aa16.31■□□□□ 0.2
CSNK1E-202ENST00000366216 PSME1Q06323 249 aa16.31■□□□□ 0.2
CSNK1E-202ENST00000366216 EZH2Q15910 746 aaKnown RBP16.31■□□□□ 0.2
CSNK1E-202ENST00000366216 NRXN1Q9ULB1 1477 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms