RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLSTN1-201ENST00000361311 NKTRP30414 1462 aaKnown RBP19.46■□□□□ 0.71
CLSTN1-201ENST00000361311 CHMP3Q9Y3E7 222 aa19.46■□□□□ 0.71
CLSTN1-201ENST00000361311 NOB1Q9ULX3 412 aaKnown RBP19.45■□□□□ 0.7
CLSTN1-201ENST00000361311 ATF7IPQ6VMQ6 1270 aa19.45■□□□□ 0.7
CLSTN1-201ENST00000361311 CC2D2AQ9P2K1 1620 aa19.45■□□□□ 0.7
CLSTN1-201ENST00000361311 GCC1Q96CN9 775 aa19.45■□□□□ 0.7
CLSTN1-201ENST00000361311 IFT57Q9NWB7 429 aa19.44■□□□□ 0.7
CLSTN1-201ENST00000361311 NEK4P51957 841 aa19.44■□□□□ 0.7
CLSTN1-201ENST00000361311 CWC22Q9HCG8 908 aaKnown RBP19.44■□□□□ 0.7
CLSTN1-201ENST00000361311 NESP48681 1621 aa19.44■□□□□ 0.7
CLSTN1-201ENST00000361311 CHD1LQ86WJ1 897 aa19.44■□□□□ 0.7
CLSTN1-201ENST00000361311 BECN2A8MW95 431 aa19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 RARSP54136 660 aaKnown RBP19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 C1orf115Q9H7X2 142 aa19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 TPM4P67936 248 aa19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 XPCQ01831 940 aaPredicted RBP19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 PTPRGP23470 1445 aa19.43■□□□□ 0.7
CLSTN1-201ENST00000361311 CT47B1P0C2W7 299 aaPredicted RBP19.4■□□□□ 0.7
CLSTN1-201ENST00000361311 DHX29Q7Z478 1369 aaKnown RBP19.4■□□□□ 0.7
CLSTN1-201ENST00000361311 CFAP70Q5T0N1 1121 aa19.4■□□□□ 0.7
CLSTN1-201ENST00000361311 SMC3Q9UQE7 1217 aa19.4■□□□□ 0.7
CLSTN1-201ENST00000361311 PRDM2Q13029 1718 aa19.4■□□□□ 0.7
CLSTN1-201ENST00000361311 PRDM10Q9NQV6 1147 aa19.39■□□□□ 0.7
CLSTN1-201ENST00000361311 GNAI1P63096 354 aa19.39■□□□□ 0.69
CLSTN1-201ENST00000361311 C9orf84Q5VXU9 1444 aa19.39■□□□□ 0.69
CLSTN1-201ENST00000361311 VPS37CA5D8V6 355 aaPredicted RBP19.39■□□□□ 0.69
CLSTN1-201ENST00000361311 SSFA2P28290 1259 aa19.39■□□□□ 0.69
CLSTN1-201ENST00000361311 TPM3P06753 285 aa19.38■□□□□ 0.69
CLSTN1-201ENST00000361311 HSP90B1P14625 803 aaKnown RBP19.38■□□□□ 0.69
CLSTN1-201ENST00000361311 GPATCH3Q96I76 525 aa19.38■□□□□ 0.69
CLSTN1-201ENST00000361311 ABCC5O15440 1437 aa19.38■□□□□ 0.69
CLSTN1-201ENST00000361311 GGNBP2Q9H3C7 697 aa19.37■□□□□ 0.69
CLSTN1-201ENST00000361311 BCL11BQ9C0K0 894 aaPredicted RBP19.37■□□□□ 0.69
CLSTN1-201ENST00000361311 SYCE3A1L190 88 aa19.37■□□□□ 0.69
CLSTN1-201ENST00000361311 MCM2P49736 904 aa19.37■□□□□ 0.69
CLSTN1-201ENST00000361311 EPRSP07814 1512 aaKnown RBP19.36■□□□□ 0.69
CLSTN1-201ENST00000361311 SASS6Q6UVJ0 657 aa19.36■□□□□ 0.69
CLSTN1-201ENST00000361311 SEC24BO95487 1268 aa19.36■□□□□ 0.69
CLSTN1-201ENST00000361311 SCAPERQ9BY12 1400 aa19.36■□□□□ 0.69
CLSTN1-201ENST00000361311 HECW1Q76N89 1606 aa19.35■□□□□ 0.69
CLSTN1-201ENST00000361311 PRG4Q92954 1404 aaPredicted RBP19.35■□□□□ 0.69
CLSTN1-201ENST00000361311 CDK13Q14004 1512 aaKnown RBP19.35■□□□□ 0.69
CLSTN1-201ENST00000361311 LETM1O95202 739 aaPredicted RBP19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 SLC12A5Q9H2X9 1139 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 KIF3AQ9Y496 699 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 TMEM57Q8N5G2 664 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 GNL2Q13823 731 aaKnown RBP19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 BICD2Q8TD16 824 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 H3BQV1 296 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 IFFO2Q5TF58 517 aa19.34■□□□□ 0.69
CLSTN1-201ENST00000361311 CCDC66A2RUB6 948 aa19.33■□□□□ 0.68
CLSTN1-201ENST00000361311 HMOX1P09601 288 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 PARD3Q8TEW0 1356 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 SPC24Q8NBT2 197 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 TROQ12816 1431 aaPredicted RBP19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 TEX35Q5T0J7 233 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 PCDHB15Q9Y5E8 787 aa19.32■□□□□ 0.68
CLSTN1-201ENST00000361311 FIBPO43427 364 aa19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 SF3A1Q15459 793 aaKnown RBP19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 MINK1Q8N4C8 1332 aaPredicted RBP19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 ZKSCAN1P17029 563 aaPredicted RBP19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 KLHL40Q2TBA0 621 aa19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 CCDC27Q2M243 656 aa19.31■□□□□ 0.68
CLSTN1-201ENST00000361311 GOLGA6L1Q8N7Z2 621 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 TRIM5Q9C035 493 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 KDM2BQ8NHM5 1336 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 CBX1P83916 185 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 A0A0G2JS52 829 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 VGFO15240 615 aaPredicted RBP19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 BAG4O95429 457 aaKnown RBP19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 TPD52L1Q16890 204 aaPredicted RBP19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 FAM184AQ8NB25 1140 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 RUFY2Q8WXA3 655 aa19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 POLA1P09884 1462 aaPredicted RBP19.3■□□□□ 0.68
CLSTN1-201ENST00000361311 PDCL2Q8N4E4 241 aa19.29■□□□□ 0.68
CLSTN1-201ENST00000361311 ZHX1Q9UKY1 873 aaPredicted RBP19.29■□□□□ 0.68
CLSTN1-201ENST00000361311 ERC2O15083 957 aa19.29■□□□□ 0.68
CLSTN1-201ENST00000361311 HDGFP51858 240 aaKnown RBP19.29■□□□□ 0.68
CLSTN1-201ENST00000361311 HOMER1Q86YM7 354 aa19.29■□□□□ 0.68
CLSTN1-201ENST00000361311 CCAR2Q8N163 923 aaKnown RBP19.28■□□□□ 0.68
CLSTN1-201ENST00000361311 SSH1Q8WYL5 1049 aa19.28■□□□□ 0.68
CLSTN1-201ENST00000361311 DYNC1I1O14576 645 aa19.28■□□□□ 0.68
CLSTN1-201ENST00000361311 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.28■□□□□ 0.68
CLSTN1-201ENST00000361311 TMEM132EQ6IEE7 984 aa19.28■□□□□ 0.68
CLSTN1-201ENST00000361311 LMOD2Q6P5Q4 547 aa19.27■□□□□ 0.68
CLSTN1-201ENST00000361311 HDAC5Q9UQL6 1122 aa19.27■□□□□ 0.68
CLSTN1-201ENST00000361311 MCM5P33992 734 aa19.27■□□□□ 0.67
CLSTN1-201ENST00000361311 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 CHMP4AQ9BY43 222 aa19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 CABP2Q9NPB3 220 aa19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 WDR33Q9C0J8 1336 aaKnown RBP19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 DISP3Q9P2K9 1392 aa19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 GPS2Q13227 327 aa19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 PRKAR2BP31323 418 aa19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 TWISTNBQ3B726 338 aaPredicted RBP19.26■□□□□ 0.67
CLSTN1-201ENST00000361311 BICRAQ9NZM4 1560 aa19.25■□□□□ 0.67
CLSTN1-201ENST00000361311 ARGLU1Q9NWB6 273 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms