RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 PLB1Q6P1J6 1458 aa13.44□□□□□ -0.26
CLCN6-202ENST00000346436 IQGAP2Q13576 1575 aa13.44□□□□□ -0.26
CLCN6-202ENST00000346436 KIAA2012Q0VF49 1180 aa13.44□□□□□ -0.26
CLCN6-202ENST00000346436 TOM1O60784 492 aa13.44□□□□□ -0.26
CLCN6-202ENST00000346436 NLRP6P59044 892 aa13.44□□□□□ -0.26
CLCN6-202ENST00000346436 ZKSCAN2Q63HK3 967 aa13.43□□□□□ -0.26
CLCN6-202ENST00000346436 ROCK1Q13464 1354 aa13.43□□□□□ -0.26
CLCN6-202ENST00000346436 GOLGA6L3A6NEY3 463 aa13.43□□□□□ -0.26
CLCN6-202ENST00000346436 PRM3Q9NNZ6 103 aa13.43□□□□□ -0.26
CLCN6-202ENST00000346436 CAMSAP2Q08AD1 1489 aa13.43□□□□□ -0.26
CLCN6-202ENST00000346436 RASSF8Q8NHQ8 419 aa13.42□□□□□ -0.26
CLCN6-202ENST00000346436 ARHGEF11O15085 1522 aa13.42□□□□□ -0.26
CLCN6-202ENST00000346436 DNTTIP2Q5QJE6 756 aaKnown RBP13.42□□□□□ -0.26
CLCN6-202ENST00000346436 RPRD2Q5VT52 1461 aaKnown RBP13.42□□□□□ -0.26
CLCN6-202ENST00000346436 THOC2Q8NI27 1593 aaKnown RBP13.42□□□□□ -0.26
CLCN6-202ENST00000346436 SLC52A1Q9NWF4 448 aa13.42□□□□□ -0.26
CLCN6-202ENST00000346436 ANKRD45Q5TZF3 282 aa13.41□□□□□ -0.26
CLCN6-202ENST00000346436 NOL8Q76FK4 1167 aaKnown RBP13.41□□□□□ -0.26
CLCN6-202ENST00000346436 PRDM11Q9NQV5 511 aa13.41□□□□□ -0.26
CLCN6-202ENST00000346436 CABP2Q9NPB3 220 aa13.41□□□□□ -0.26
CLCN6-202ENST00000346436 BRPF3Q9ULD4 1205 aa13.41□□□□□ -0.26
CLCN6-202ENST00000346436 GGNBP2Q9H3C7 697 aa13.41□□□□□ -0.26
CLCN6-202ENST00000346436 TATP17735 454 aaPredicted RBP13.4□□□□□ -0.26
CLCN6-202ENST00000346436 KIF3AQ9Y496 699 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 FOXD4L5Q5VV16 416 aaPredicted RBP13.4□□□□□ -0.26
CLCN6-202ENST00000346436 TOM1L2Q6ZVM7 507 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 ABTB2Q8N961 1025 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 FOXD4L4Q8WXT5 416 aaPredicted RBP13.4□□□□□ -0.26
CLCN6-202ENST00000346436 MTHFSP49914 203 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 RUNDC1Q96C34 613 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 ERBINQ96RT1 1412 aa13.4□□□□□ -0.26
CLCN6-202ENST00000346436 RAD21O60216 631 aa13.39□□□□□ -0.27
CLCN6-202ENST00000346436 TCP11L2Q8N4U5 519 aa13.39□□□□□ -0.27
CLCN6-202ENST00000346436 NGEFQ8N5V2 710 aa13.39□□□□□ -0.27
CLCN6-202ENST00000346436 DZIP1LQ8IYY4 767 aaKnown RBP13.39□□□□□ -0.27
CLCN6-202ENST00000346436 GBP4Q96PP9 640 aa13.39□□□□□ -0.27
CLCN6-202ENST00000346436 SLC12A5Q9H2X9 1139 aa13.39□□□□□ -0.27
CLCN6-202ENST00000346436 RIPK4P57078 832 aa13.38□□□□□ -0.27
CLCN6-202ENST00000346436 AKAP17AQ02040 695 aaKnown RBP13.38□□□□□ -0.27
CLCN6-202ENST00000346436 C9orf78Q9NZ63 289 aaPredicted RBP13.38□□□□□ -0.27
CLCN6-202ENST00000346436 SYNE3Q6ZMZ3 975 aa13.38□□□□□ -0.27
CLCN6-202ENST00000346436 PLEKHO1Q53GL0 409 aaPredicted RBP13.37□□□□□ -0.27
CLCN6-202ENST00000346436 KIF6Q6ZMV9 814 aa13.37□□□□□ -0.27
CLCN6-202ENST00000346436 ARID3AQ99856 593 aa13.37□□□□□ -0.27
CLCN6-202ENST00000346436 LNPKQ9C0E8 428 aa13.36□□□□□ -0.27
CLCN6-202ENST00000346436 KIAA0586Q9BVV6 1533 aa13.36□□□□□ -0.27
CLCN6-202ENST00000346436 TSR2Q969E8 191 aaKnown RBP13.36□□□□□ -0.27
CLCN6-202ENST00000346436 HMOX1P09601 288 aa13.36□□□□□ -0.27
CLCN6-202ENST00000346436 NGLY1Q96IV0 654 aa13.36□□□□□ -0.27
CLCN6-202ENST00000346436 RBM42Q9BTD8 480 aaKnown RBP13.36□□□□□ -0.27
CLCN6-202ENST00000346436 PPP6R1Q9UPN7 881 aa13.36□□□□□ -0.27
CLCN6-202ENST00000346436 DIAPH1O60610 1272 aaKnown RBP13.35□□□□□ -0.27
CLCN6-202ENST00000346436 UGGT2Q9NYU1 1516 aa13.35□□□□□ -0.27
CLCN6-202ENST00000346436 UBAP1LF5GYI3 381 aa13.35□□□□□ -0.27
CLCN6-202ENST00000346436 EIF2S2P20042 333 aaKnown RBP13.35□□□□□ -0.27
CLCN6-202ENST00000346436 ZNF608Q9ULD9 1512 aaPredicted RBP13.35□□□□□ -0.27
CLCN6-202ENST00000346436 CFAP43Q8NDM7 1665 aa13.34□□□□□ -0.27
CLCN6-202ENST00000346436 TRIM6-TRIM34B2RNG4 842 aa13.34□□□□□ -0.27
CLCN6-202ENST00000346436 MSNP26038 577 aaKnown RBP13.34□□□□□ -0.27
CLCN6-202ENST00000346436 CCDC43Q96MW1 224 aaKnown RBP13.34□□□□□ -0.27
CLCN6-202ENST00000346436 PDZRN3Q9UPQ7 1066 aa13.33□□□□□ -0.28
CLCN6-202ENST00000346436 DHX16O60231 1041 aaKnown RBP13.33□□□□□ -0.28
CLCN6-202ENST00000346436 SPG7Q9UQ90 795 aa13.33□□□□□ -0.28
CLCN6-202ENST00000346436 CPLX2Q6PUV4 134 aaKnown RBP13.33□□□□□ -0.28
CLCN6-202ENST00000346436 FOXD4L6Q3SYB3 417 aaPredicted RBP13.32□□□□□ -0.28
CLCN6-202ENST00000346436 FOXD4L3Q6VB84 417 aaPredicted RBP13.32□□□□□ -0.28
CLCN6-202ENST00000346436 CEP89Q96ST8 783 aa13.32□□□□□ -0.28
CLCN6-202ENST00000346436 LRPPRCP42704 1394 aaKnown RBP13.32□□□□□ -0.28
CLCN6-202ENST00000346436 DISP3Q9P2K9 1392 aa13.32□□□□□ -0.28
CLCN6-202ENST00000346436 DDX19BQ9UMR2 479 aa13.32□□□□□ -0.28
CLCN6-202ENST00000346436 EXOSC9Q06265 439 aaKnown RBP13.31□□□□□ -0.28
CLCN6-202ENST00000346436 C22orf23Q9BZE7 217 aa13.31□□□□□ -0.28
CLCN6-202ENST00000346436 ZNF692Q9BU19 519 aaPredicted RBP13.31□□□□□ -0.28
CLCN6-202ENST00000346436 NUTM2GQ5VZR2 741 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
CLCN6-202ENST00000346436 RAPGEF3O95398 923 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 CD109Q6YHK3 1445 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 SCAPERQ9BY12 1400 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 SLFN5Q08AF3 891 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 C1orf115Q9H7X2 142 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 LAMC3Q9Y6N6 1575 aa13.3□□□□□ -0.28
CLCN6-202ENST00000346436 RIC3Q7Z5B4 369 aa13.29□□□□□ -0.28
CLCN6-202ENST00000346436 NECTIN2Q92692 538 aa13.29□□□□□ -0.28
CLCN6-202ENST00000346436 GAS2L2Q8NHY3 880 aa13.29□□□□□ -0.28
CLCN6-202ENST00000346436 CTTNBP2Q8WZ74 1663 aa13.28□□□□□ -0.28
CLCN6-202ENST00000346436 TPM4P67936 248 aa13.28□□□□□ -0.28
CLCN6-202ENST00000346436 PAXIP1Q6ZW49 1069 aaPredicted RBP13.28□□□□□ -0.28
CLCN6-202ENST00000346436 R3HCC1Q9Y3T6 440 aaKnown RBP13.27□□□□□ -0.28
CLCN6-202ENST00000346436 G3BP1Q13283 466 aaKnown RBP eCLIP13.27□□□□□ -0.28
CLCN6-202ENST00000346436 WWC2Q6AWC2 1192 aa13.27□□□□□ -0.28
CLCN6-202ENST00000346436 GRIN2AQ12879 1464 aa13.27□□□□□ -0.29
CLCN6-202ENST00000346436 CABP4P57796 275 aa13.27□□□□□ -0.29
CLCN6-202ENST00000346436 GNL3LQ9NVN8 582 aaKnown RBP13.27□□□□□ -0.29
CLCN6-202ENST00000346436 DDX49Q9Y6V7 483 aaKnown RBP13.26□□□□□ -0.29
CLCN6-202ENST00000346436 GPATCH8Q9UKJ3 1502 aaKnown RBP13.26□□□□□ -0.29
CLCN6-202ENST00000346436 HSP90AB4PQ58FF6 505 aa13.26□□□□□ -0.29
CLCN6-202ENST00000346436 DDX11L8A8MPP1 907 aa13.26□□□□□ -0.29
CLCN6-202ENST00000346436 TEX14Q8IWB6 1497 aa13.26□□□□□ -0.29
CLCN6-202ENST00000346436 DDX54Q8TDD1 881 aaKnown RBP13.26□□□□□ -0.29
CLCN6-202ENST00000346436 ERICH2A1L162 156 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms