RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 STK26Q9P289 416 aa25.45■■□□□ 1.66
COL9A3-201ENST00000343916 FBXO31Q5XUX0 539 aaPredicted RBP25.44■■□□□ 1.66
COL9A3-201ENST00000343916 ARHGEF28Q8N1W1 1705 aaKnown RBP25.44■■□□□ 1.66
COL9A3-201ENST00000343916 CABP2Q9NPB3 220 aa25.43■■□□□ 1.66
COL9A3-201ENST00000343916 EVC2Q86UK5 1308 aa25.43■■□□□ 1.66
COL9A3-201ENST00000343916 MYO5BQ9ULV0 1848 aa25.42■■□□□ 1.66
COL9A3-201ENST00000343916 TULP4Q9NRJ4 1543 aa25.42■■□□□ 1.66
COL9A3-201ENST00000343916 POLR3AO14802 1390 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-201ENST00000343916 DMRT2Q9Y5R5 561 aa25.42■■□□□ 1.66
COL9A3-201ENST00000343916 TRMT2AQ8IZ69 625 aaKnown RBP25.39■■□□□ 1.65
COL9A3-201ENST00000343916 PREX1Q8TCU6 1659 aa25.39■■□□□ 1.65
COL9A3-201ENST00000343916 CGNL1Q0VF96 1302 aa25.39■■□□□ 1.65
COL9A3-201ENST00000343916 SKAP1Q86WV1 359 aa25.37■■□□□ 1.65
COL9A3-201ENST00000343916 MTHFSP49914 203 aa25.36■■□□□ 1.65
COL9A3-201ENST00000343916 TMEM131LA2VDJ0 1609 aa25.36■■□□□ 1.65
COL9A3-201ENST00000343916 ZFYVE9O95405 1425 aa25.35■■□□□ 1.65
COL9A3-201ENST00000343916 NEUROD2Q15784 382 aa25.35■■□□□ 1.65
COL9A3-201ENST00000343916 ANKRD36BQ8N2N9 1353 aa25.34■■□□□ 1.65
COL9A3-201ENST00000343916 SHPRHQ149N8 1683 aa25.34■■□□□ 1.65
COL9A3-201ENST00000343916 NKTRP30414 1462 aaKnown RBP25.33■■□□□ 1.65
COL9A3-201ENST00000343916 E9PSI1 815 aa25.32■■□□□ 1.64
COL9A3-201ENST00000343916 SRPK2P78362 688 aaKnown RBP25.32■■□□□ 1.64
COL9A3-201ENST00000343916 RRP7AQ9Y3A4 280 aaKnown RBP25.32■■□□□ 1.64
COL9A3-201ENST00000343916 TCERG1O14776 1098 aaKnown RBP25.32■■□□□ 1.64
COL9A3-201ENST00000343916 BCAR3O75815 825 aa25.31■■□□□ 1.64
COL9A3-201ENST00000343916 WWC1Q8IX03 1113 aa25.31■■□□□ 1.64
COL9A3-201ENST00000343916 PUS7Q96PZ0 661 aaKnown RBP25.31■■□□□ 1.64
COL9A3-201ENST00000343916 MINK1Q8N4C8 1332 aaPredicted RBP25.31■■□□□ 1.64
COL9A3-201ENST00000343916 USP32Q8NFA0 1604 aa25.3■■□□□ 1.64
COL9A3-201ENST00000343916 PRAM1Q96QH2 718 aa25.3■■□□□ 1.64
COL9A3-201ENST00000343916 STAG3Q9UJ98 1225 aa25.3■■□□□ 1.64
COL9A3-201ENST00000343916 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.29■■□□□ 1.64
COL9A3-201ENST00000343916 A0A1W2PP64 1363 aa25.28■■□□□ 1.64
COL9A3-201ENST00000343916 PTPRMP28827 1452 aa25.27■■□□□ 1.64
COL9A3-201ENST00000343916 ANP32AP39687 249 aaKnown RBP25.27■■□□□ 1.64
COL9A3-201ENST00000343916 MLECQ14165 292 aa25.26■■□□□ 1.63
COL9A3-201ENST00000343916 TCP11L2Q8N4U5 519 aa25.26■■□□□ 1.63
COL9A3-201ENST00000343916 RUNDC1Q96C34 613 aa25.26■■□□□ 1.63
COL9A3-201ENST00000343916 POGKQ9P215 609 aa25.26■■□□□ 1.63
COL9A3-201ENST00000343916 NGEFQ8N5V2 710 aa25.26■■□□□ 1.63
COL9A3-201ENST00000343916 YTHDC2Q9H6S0 1430 aaKnown RBP25.25■■□□□ 1.63
COL9A3-201ENST00000343916 PDE4AP27815 886 aa25.25■■□□□ 1.63
COL9A3-201ENST00000343916 CFAP53Q96M91 514 aa25.24■■□□□ 1.63
COL9A3-201ENST00000343916 PAK3O75914 559 aaPredicted RBP25.24■■□□□ 1.63
COL9A3-201ENST00000343916 GGNBP2Q9H3C7 697 aa25.24■■□□□ 1.63
COL9A3-201ENST00000343916 NOP58Q9Y2X3 529 aaKnown RBP25.23■■□□□ 1.63
COL9A3-201ENST00000343916 KDM2BQ8NHM5 1336 aa25.23■■□□□ 1.63
COL9A3-201ENST00000343916 NSD2O96028 1365 aa25.22■■□□□ 1.63
COL9A3-201ENST00000343916 NPM2Q86SE8 214 aaKnown RBP25.21■■□□□ 1.63
COL9A3-201ENST00000343916 REREQ9P2R6 1566 aa25.21■■□□□ 1.63
COL9A3-201ENST00000343916 ABCC11Q96J66 1382 aa25.2■■□□□ 1.63
COL9A3-201ENST00000343916 ALKQ9UM73 1620 aa25.2■■□□□ 1.62
COL9A3-201ENST00000343916 MS4A1P11836 297 aa25.2■■□□□ 1.62
COL9A3-201ENST00000343916 IPO9Q96P70 1041 aaKnown RBP25.2■■□□□ 1.62
COL9A3-201ENST00000343916 BACH2Q9BYV9 841 aa25.2■■□□□ 1.62
COL9A3-201ENST00000343916 IQSEC2Q5JU85 1478 aa25.2■■□□□ 1.62
COL9A3-201ENST00000343916 U2AF1L5P0DN76 240 aaPredicted RBP25.2■■□□□ 1.62
COL9A3-201ENST00000343916 U2AF1Q01081 240 aaKnown RBP eCLIP25.2■■□□□ 1.62
COL9A3-201ENST00000343916 CLTCQ00610 1675 aaKnown RBP25.19■■□□□ 1.62
COL9A3-201ENST00000343916 ATAD2Q6PL18 1390 aa25.17■■□□□ 1.62
COL9A3-201ENST00000343916 NINLQ9Y2I6 1382 aa25.17■■□□□ 1.62
COL9A3-201ENST00000343916 AGLP35573 1532 aa25.17■■□□□ 1.62
COL9A3-201ENST00000343916 CENPQQ7L2Z9 268 aaPredicted RBP25.17■■□□□ 1.62
COL9A3-201ENST00000343916 CDK19Q9BWU1 502 aa25.16■■□□□ 1.62
COL9A3-201ENST00000343916 FYB1O15117 783 aa25.15■■□□□ 1.62
COL9A3-201ENST00000343916 PHF23Q9BUL5 403 aaPredicted RBP25.15■■□□□ 1.62
COL9A3-201ENST00000343916 CD163L1Q9NR16 1453 aa25.15■■□□□ 1.62
COL9A3-201ENST00000343916 TERF2IPQ9NYB0 399 aa25.15■■□□□ 1.62
COL9A3-201ENST00000343916 ARHGEF40Q8TER5 1519 aa25.14■■□□□ 1.62
COL9A3-201ENST00000343916 WAPLQ7Z5K2 1190 aa25.14■■□□□ 1.61
COL9A3-201ENST00000343916 A2ML1A8K2U0 1454 aa25.13■■□□□ 1.61
COL9A3-201ENST00000343916 CABP1Q9NZU7 370 aa25.13■■□□□ 1.61
COL9A3-201ENST00000343916 U2SURPO15042 1029 aaKnown RBP25.12■■□□□ 1.61
COL9A3-201ENST00000343916 PPP6R1Q9UPN7 881 aa25.12■■□□□ 1.61
COL9A3-201ENST00000343916 CANXP27824 592 aaKnown RBP25.11■■□□□ 1.61
COL9A3-201ENST00000343916 FRAT1Q92837 279 aaPredicted RBP25.11■■□□□ 1.61
COL9A3-201ENST00000343916 WDR63Q8IWG1 891 aa25.1■■□□□ 1.61
COL9A3-201ENST00000343916 PANK1Q8TE04 598 aa25.1■■□□□ 1.61
COL9A3-201ENST00000343916 NBR1Q14596 966 aa25.1■■□□□ 1.61
COL9A3-201ENST00000343916 RIMS2Q9UQ26 1411 aa25.09■■□□□ 1.61
COL9A3-201ENST00000343916 ZBTB47Q9UFB7 747 aaPredicted RBP25.09■■□□□ 1.61
COL9A3-201ENST00000343916 SPATA31D1Q6ZQQ2 1576 aa25.08■■□□□ 1.61
COL9A3-201ENST00000343916 BCL2L13Q9BXK5 485 aa25.08■■□□□ 1.61
COL9A3-201ENST00000343916 COG6Q9Y2V7 657 aa25.08■■□□□ 1.61
COL9A3-201ENST00000343916 NLRP1Q9C000 1473 aa25.08■■□□□ 1.61
COL9A3-201ENST00000343916 DEKP35659 375 aaKnown RBP25.08■■□□□ 1.61
COL9A3-201ENST00000343916 RARSP54136 660 aaKnown RBP25.08■■□□□ 1.61
COL9A3-201ENST00000343916 CCDC27Q2M243 656 aa25.08■■□□□ 1.61
COL9A3-201ENST00000343916 HDGFL2Q7Z4V5 671 aaPredicted RBP25.08■■□□□ 1.61
COL9A3-201ENST00000343916 PDE3AQ14432 1141 aa25.06■■□□□ 1.6
COL9A3-201ENST00000343916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.05■■□□□ 1.6
COL9A3-201ENST00000343916 FBLN1P23142 703 aa25.04■■□□□ 1.6
COL9A3-201ENST00000343916 RGS3P49796 1198 aa25.04■■□□□ 1.6
COL9A3-201ENST00000343916 PLEKHF1Q96S99 279 aa25.04■■□□□ 1.6
COL9A3-201ENST00000343916 TNNQ9UQP3 1299 aa25.04■■□□□ 1.6
COL9A3-201ENST00000343916 COL3A1P02461 1466 aaPredicted RBP25.03■■□□□ 1.6
COL9A3-201ENST00000343916 IGHDP01880 384 aa25.03■■□□□ 1.6
COL9A3-201ENST00000343916 ADGRB2O60241 1585 aa25.01■■□□□ 1.59
COL9A3-201ENST00000343916 TRHP20396 242 aaPredicted RBP25.01■■□□□ 1.59
COL9A3-201ENST00000343916 TSR2Q969E8 191 aaKnown RBP25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms