RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 EIF3AQ14152 1382 aaKnown RBP16.81■□□□□ 0.28
SPTLC1-202ENST00000337841 PLEKHH1Q9ULM0 1364 aa16.81■□□□□ 0.28
SPTLC1-202ENST00000337841 CENPJQ9HC77 1338 aaPredicted RBP16.81■□□□□ 0.28
SPTLC1-202ENST00000337841 POTEDQ86YR6 584 aa16.81■□□□□ 0.28
SPTLC1-202ENST00000337841 XRN1Q8IZH2 1706 aaKnown RBP16.81■□□□□ 0.28
SPTLC1-202ENST00000337841 DLC1Q96QB1 1528 aa16.8■□□□□ 0.28
SPTLC1-202ENST00000337841 MINK1Q8N4C8 1332 aaPredicted RBP16.79■□□□□ 0.28
SPTLC1-202ENST00000337841 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
SPTLC1-202ENST00000337841 SLAIN2Q9P270 581 aa16.79■□□□□ 0.28
SPTLC1-202ENST00000337841 TRPM1Q7Z4N2 1603 aa16.78■□□□□ 0.28
SPTLC1-202ENST00000337841 ADGRL3Q9HAR2 1447 aa16.78■□□□□ 0.28
SPTLC1-202ENST00000337841 HIRIP3Q9BW71 556 aaPredicted RBP16.77■□□□□ 0.28
SPTLC1-202ENST00000337841 ST20-MTHFSA0A0A6YYL1 179 aa16.75■□□□□ 0.27
SPTLC1-202ENST00000337841 WASLO00401 505 aaPredicted RBP16.75■□□□□ 0.27
SPTLC1-202ENST00000337841 EIF4G2P78344 907 aaKnown RBP eCLIP16.75■□□□□ 0.27
SPTLC1-202ENST00000337841 PIP4K2BP78356 416 aa16.75■□□□□ 0.27
SPTLC1-202ENST00000337841 FBXO41Q8TF61 875 aa16.75■□□□□ 0.27
SPTLC1-202ENST00000337841 SCAF1Q9H7N4 1312 aaKnown RBP16.74■□□□□ 0.27
SPTLC1-202ENST00000337841 DCCP43146 1447 aa16.74■□□□□ 0.27
SPTLC1-202ENST00000337841 CDK19Q9BWU1 502 aa16.73■□□□□ 0.27
SPTLC1-202ENST00000337841 KNDC1Q76NI1 1749 aa16.73■□□□□ 0.27
SPTLC1-202ENST00000337841 NUTM2FA1L443 756 aa16.72■□□□□ 0.27
SPTLC1-202ENST00000337841 USP47Q96K76 1375 aa16.72■□□□□ 0.27
SPTLC1-202ENST00000337841 EVC2Q86UK5 1308 aa16.71■□□□□ 0.27
SPTLC1-202ENST00000337841 SRPK2P78362 688 aaKnown RBP16.7■□□□□ 0.26
SPTLC1-202ENST00000337841 ESCO1Q5FWF5 840 aa16.69■□□□□ 0.26
SPTLC1-202ENST00000337841 HSPA5P11021 654 aaKnown RBP16.68■□□□□ 0.26
SPTLC1-202ENST00000337841 NUDT16Q96DE0 195 aaKnown RBP16.68■□□□□ 0.26
SPTLC1-202ENST00000337841 TMF1P82094 1093 aa16.67■□□□□ 0.26
SPTLC1-202ENST00000337841 TESK2Q96S53 571 aa16.67■□□□□ 0.26
SPTLC1-202ENST00000337841 CABP2Q9NPB3 220 aa16.67■□□□□ 0.26
SPTLC1-202ENST00000337841 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.67■□□□□ 0.26
SPTLC1-202ENST00000337841 SBNO2Q9Y2G9 1366 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 XIRP1Q702N8 1843 aaKnown RBP16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 MST1RQ04912 1400 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 CDCA8Q53HL2 280 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 ORAI2Q96SN7 254 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 CCDC61Q9Y6R9 512 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 C1orf167Q5SNV9 1468 aa16.66■□□□□ 0.26
SPTLC1-202ENST00000337841 BRINP3Q76B58 766 aa16.65■□□□□ 0.26
SPTLC1-202ENST00000337841 PUS7Q96PZ0 661 aaKnown RBP16.65■□□□□ 0.26
SPTLC1-202ENST00000337841 ARHGEF28Q8N1W1 1705 aaKnown RBP16.65■□□□□ 0.26
SPTLC1-202ENST00000337841 PHF8Q9UPP1 1060 aa16.64■□□□□ 0.25
SPTLC1-202ENST00000337841 CDC42BPGQ6DT37 1551 aa16.64■□□□□ 0.25
SPTLC1-202ENST00000337841 ANKARQ7Z5J8 1434 aa16.63■□□□□ 0.25
SPTLC1-202ENST00000337841 NALCNQ8IZF0 1738 aa16.62■□□□□ 0.25
SPTLC1-202ENST00000337841 PRR36Q9H6K5 1346 aa16.62■□□□□ 0.25
SPTLC1-202ENST00000337841 NGDNQ8NEJ9 315 aaKnown RBP16.61■□□□□ 0.25
SPTLC1-202ENST00000337841 PMFBP1Q8TBY8 1022 aa16.61■□□□□ 0.25
SPTLC1-202ENST00000337841 ADGRB2O60241 1585 aa16.6■□□□□ 0.25
SPTLC1-202ENST00000337841 PLEKHG3A1L390 1219 aa16.6■□□□□ 0.25
SPTLC1-202ENST00000337841 FOXO3O43524 673 aa16.6■□□□□ 0.25
SPTLC1-202ENST00000337841 PSME1Q06323 249 aa16.6■□□□□ 0.25
SPTLC1-202ENST00000337841 CABP1Q9NZU7 370 aa16.59■□□□□ 0.25
SPTLC1-202ENST00000337841 NPHP3Q7Z494 1330 aa16.59■□□□□ 0.25
SPTLC1-202ENST00000337841 ATAD2Q6PL18 1390 aa16.59■□□□□ 0.25
SPTLC1-202ENST00000337841 HSPA1LP34931 641 aa16.58■□□□□ 0.24
SPTLC1-202ENST00000337841 TMC1Q8TDI8 760 aa16.58■□□□□ 0.24
SPTLC1-202ENST00000337841 TULP4Q9NRJ4 1543 aa16.58■□□□□ 0.24
SPTLC1-202ENST00000337841 QRICH2Q9H0J4 1663 aa16.57■□□□□ 0.24
SPTLC1-202ENST00000337841 KRT28Q7Z3Y7 464 aa16.57■□□□□ 0.24
SPTLC1-202ENST00000337841 ILDR1Q86SU0 546 aaPredicted RBP16.57■□□□□ 0.24
SPTLC1-202ENST00000337841 DDX17Q92841 729 aaKnown RBP16.56■□□□□ 0.24
SPTLC1-202ENST00000337841 LRRC59Q96AG4 307 aaKnown RBP16.56■□□□□ 0.24
SPTLC1-202ENST00000337841 POLR3GLQ9BT43 218 aa16.56■□□□□ 0.24
SPTLC1-202ENST00000337841 ZNF692Q9BU19 519 aaPredicted RBP16.56■□□□□ 0.24
SPTLC1-202ENST00000337841 ACEP12821 1306 aa16.55■□□□□ 0.24
SPTLC1-202ENST00000337841 PPP4R3CPQ6ZMV5 832 aa16.55■□□□□ 0.24
SPTLC1-202ENST00000337841 FMN2Q9NZ56 1722 aa16.55■□□□□ 0.24
SPTLC1-202ENST00000337841 DISP3Q9P2K9 1392 aa16.54■□□□□ 0.24
SPTLC1-202ENST00000337841 SLC12A5Q9H2X9 1139 aa16.54■□□□□ 0.24
SPTLC1-202ENST00000337841 PPIP5K1Q6PFW1 1433 aa16.53■□□□□ 0.24
SPTLC1-202ENST00000337841 HDGFL2Q7Z4V5 671 aaPredicted RBP16.53■□□□□ 0.24
SPTLC1-202ENST00000337841 TERF2IPQ9NYB0 399 aa16.53■□□□□ 0.24
SPTLC1-202ENST00000337841 ATP7BP35670 1465 aa16.53■□□□□ 0.24
SPTLC1-202ENST00000337841 SOS2Q07890 1332 aaPredicted RBP16.52■□□□□ 0.24
SPTLC1-202ENST00000337841 XPCQ01831 940 aaPredicted RBP16.52■□□□□ 0.24
SPTLC1-202ENST00000337841 ROBO1Q9Y6N7 1651 aa16.51■□□□□ 0.23
SPTLC1-202ENST00000337841 C11orf95C9JLR9 678 aaPredicted RBP16.5■□□□□ 0.23
SPTLC1-202ENST00000337841 PAK3O75914 559 aaPredicted RBP16.5■□□□□ 0.23
SPTLC1-202ENST00000337841 NINLQ9Y2I6 1382 aa16.5■□□□□ 0.23
SPTLC1-202ENST00000337841 LMOD2Q6P5Q4 547 aa16.49■□□□□ 0.23
SPTLC1-202ENST00000337841 POLR3AO14802 1390 aaPredicted RBP16.49■□□□□ 0.23
SPTLC1-202ENST00000337841 USP32Q8NFA0 1604 aa16.47■□□□□ 0.23
SPTLC1-202ENST00000337841 SBNO1A3KN83 1393 aa16.47■□□□□ 0.23
SPTLC1-202ENST00000337841 BRD4O60885 1362 aaPredicted RBP16.47■□□□□ 0.23
SPTLC1-202ENST00000337841 SPATA31A3Q5VYP0 1347 aa16.46■□□□□ 0.23
SPTLC1-202ENST00000337841 KIF7Q2M1P5 1343 aa16.45■□□□□ 0.22
SPTLC1-202ENST00000337841 AHDC1Q5TGY3 1603 aaPredicted RBP16.45■□□□□ 0.22
SPTLC1-202ENST00000337841 KTN1Q86UP2 1357 aaKnown RBP16.45■□□□□ 0.22
SPTLC1-202ENST00000337841 JCADQ9P266 1359 aa16.45■□□□□ 0.22
SPTLC1-202ENST00000337841 KIF1AQ12756 1690 aa16.45■□□□□ 0.22
SPTLC1-202ENST00000337841 ABTB2Q8N961 1025 aa16.43■□□□□ 0.22
SPTLC1-202ENST00000337841 RGPD8O14715 1765 aaPredicted RBP16.43■□□□□ 0.22
SPTLC1-202ENST00000337841 CPSF1Q10570 1443 aaKnown RBP16.43■□□□□ 0.22
SPTLC1-202ENST00000337841 TTC21BQ7Z4L5 1316 aa16.43■□□□□ 0.22
SPTLC1-202ENST00000337841 PXDNQ92626 1479 aa16.42■□□□□ 0.22
SPTLC1-202ENST00000337841 ARHGEF10O15013 1369 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 ANKRD36BQ8N2N9 1353 aa16.41■□□□□ 0.22
SPTLC1-202ENST00000337841 CCDC7Q96M83 1385 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms