RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 TCP11L2Q8N4U5 519 aa22.43■■□□□ 1.18
PTP4A3-201ENST00000329397 MYOM2P54296 1465 aa22.43■■□□□ 1.18
PTP4A3-201ENST00000329397 SAFB2Q14151 953 aaKnown RBP eCLIP22.43■■□□□ 1.18
PTP4A3-201ENST00000329397 RLBP1P12271 317 aa22.42■■□□□ 1.18
PTP4A3-201ENST00000329397 ABCA9Q8IUA7 1624 aa22.42■■□□□ 1.18
PTP4A3-201ENST00000329397 FRAT2O75474 233 aaPredicted RBP22.41■■□□□ 1.18
PTP4A3-201ENST00000329397 MTHFSP49914 203 aa22.41■■□□□ 1.18
PTP4A3-201ENST00000329397 EFCAB6Q5THR3 1501 aa22.41■■□□□ 1.18
PTP4A3-201ENST00000329397 POLR3AO14802 1390 aaPredicted RBP22.4■■□□□ 1.18
PTP4A3-201ENST00000329397 BRPF3Q9ULD4 1205 aa22.39■■□□□ 1.18
PTP4A3-201ENST00000329397 ARAP3Q8WWN8 1544 aa22.39■■□□□ 1.18
PTP4A3-201ENST00000329397 IFT172Q9UG01 1749 aa22.39■■□□□ 1.17
PTP4A3-201ENST00000329397 CGNL1Q0VF96 1302 aa22.38■■□□□ 1.17
PTP4A3-201ENST00000329397 SHPRHQ149N8 1683 aa22.38■■□□□ 1.17
PTP4A3-201ENST00000329397 USP19O94966 1318 aa22.38■■□□□ 1.17
PTP4A3-201ENST00000329397 GSE1Q14687 1217 aa22.38■■□□□ 1.17
PTP4A3-201ENST00000329397 RARSP54136 660 aaKnown RBP22.37■■□□□ 1.17
PTP4A3-201ENST00000329397 PDE3AQ14432 1141 aa22.37■■□□□ 1.17
PTP4A3-201ENST00000329397 PCDHB15Q9Y5E8 787 aa22.37■■□□□ 1.17
PTP4A3-201ENST00000329397 KIDINS220Q9ULH0 1771 aa22.36■■□□□ 1.17
PTP4A3-201ENST00000329397 RUNDC1Q96C34 613 aa22.36■■□□□ 1.17
PTP4A3-201ENST00000329397 ASXL2Q76L83 1435 aa22.34■■□□□ 1.17
PTP4A3-201ENST00000329397 QRICH2Q9H0J4 1663 aa22.33■■□□□ 1.17
PTP4A3-201ENST00000329397 NPATQ14207 1427 aa22.33■■□□□ 1.17
PTP4A3-201ENST00000329397 CABP2Q9NPB3 220 aa22.33■■□□□ 1.16
PTP4A3-201ENST00000329397 U2AF1L5P0DN76 240 aaPredicted RBP22.32■■□□□ 1.16
PTP4A3-201ENST00000329397 U2AF1Q01081 240 aaKnown RBP eCLIP22.32■■□□□ 1.16
PTP4A3-201ENST00000329397 NRXN1Q9ULB1 1477 aa22.32■■□□□ 1.16
PTP4A3-201ENST00000329397 SLKQ9H2G2 1235 aaPredicted RBP22.32■■□□□ 1.16
PTP4A3-201ENST00000329397 C14orf93Q9H972 538 aaKnown RBP22.32■■□□□ 1.16
PTP4A3-201ENST00000329397 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.31■■□□□ 1.16
PTP4A3-201ENST00000329397 MYO3AQ8NEV4 1616 aa22.31■■□□□ 1.16
PTP4A3-201ENST00000329397 SBNO2Q9Y2G9 1366 aa22.31■■□□□ 1.16
PTP4A3-201ENST00000329397 ADGRB3O60242 1522 aa22.31■■□□□ 1.16
PTP4A3-201ENST00000329397 TSR2Q969E8 191 aaKnown RBP22.31■■□□□ 1.16
PTP4A3-201ENST00000329397 STK26Q9P289 416 aa22.28■■□□□ 1.16
PTP4A3-201ENST00000329397 IQSEC2Q5JU85 1478 aa22.28■■□□□ 1.16
PTP4A3-201ENST00000329397 NEURL4Q96JN8 1562 aa22.28■■□□□ 1.16
PTP4A3-201ENST00000329397 VIRMAQ69YN4 1812 aaKnown RBP22.27■■□□□ 1.16
PTP4A3-201ENST00000329397 PDZRN3Q9UPQ7 1066 aa22.27■■□□□ 1.16
PTP4A3-201ENST00000329397 ZNF518AQ6AHZ1 1483 aa22.27■■□□□ 1.16
PTP4A3-201ENST00000329397 NGEFQ8N5V2 710 aa22.27■■□□□ 1.15
PTP4A3-201ENST00000329397 ADGRB1O14514 1584 aa22.26■■□□□ 1.15
PTP4A3-201ENST00000329397 MAPK8IP3Q9UPT6 1336 aa22.26■■□□□ 1.15
PTP4A3-201ENST00000329397 U2SURPO15042 1029 aaKnown RBP22.26■■□□□ 1.15
PTP4A3-201ENST00000329397 PPLO60437 1756 aa22.25■■□□□ 1.15
PTP4A3-201ENST00000329397 ZC3H13Q5T200 1668 aaKnown RBP22.25■■□□□ 1.15
PTP4A3-201ENST00000329397 CFAP53Q96M91 514 aa22.25■■□□□ 1.15
PTP4A3-201ENST00000329397 PHF23Q9BUL5 403 aaPredicted RBP22.25■■□□□ 1.15
PTP4A3-201ENST00000329397 GGNBP2Q9H3C7 697 aa22.24■■□□□ 1.15
PTP4A3-201ENST00000329397 SETBP1Q9Y6X0 1596 aa22.23■■□□□ 1.15
PTP4A3-201ENST00000329397 SPRYD3Q8NCJ5 442 aa22.22■■□□□ 1.15
PTP4A3-201ENST00000329397 NINLQ9Y2I6 1382 aa22.22■■□□□ 1.15
PTP4A3-201ENST00000329397 RAPGEF3O95398 923 aa22.21■■□□□ 1.15
PTP4A3-201ENST00000329397 WDR63Q8IWG1 891 aa22.21■■□□□ 1.15
PTP4A3-201ENST00000329397 NLRP1Q9C000 1473 aa22.21■■□□□ 1.15
PTP4A3-201ENST00000329397 PMFBP1Q8TBY8 1022 aa22.21■■□□□ 1.15
PTP4A3-201ENST00000329397 FRMPD1Q5SYB0 1578 aa22.2■■□□□ 1.14
PTP4A3-201ENST00000329397 TULP4Q9NRJ4 1543 aa22.2■■□□□ 1.14
PTP4A3-201ENST00000329397 FTSJ3Q8IY81 847 aaKnown RBP22.2■■□□□ 1.14
PTP4A3-201ENST00000329397 EVC2Q86UK5 1308 aa22.19■■□□□ 1.14
PTP4A3-201ENST00000329397 SRPK2P78362 688 aaKnown RBP22.19■■□□□ 1.14
PTP4A3-201ENST00000329397 GLI2P10070 1586 aa22.19■■□□□ 1.14
PTP4A3-201ENST00000329397 LMTK2Q8IWU2 1503 aa22.18■■□□□ 1.14
PTP4A3-201ENST00000329397 EXOSC9Q06265 439 aaKnown RBP22.18■■□□□ 1.14
PTP4A3-201ENST00000329397 POGKQ9P215 609 aa22.18■■□□□ 1.14
PTP4A3-201ENST00000329397 MYH16Q9H6N6 1097 aa22.17■■□□□ 1.14
PTP4A3-201ENST00000329397 SMC4Q9NTJ3 1288 aa22.17■■□□□ 1.14
PTP4A3-201ENST00000329397 MVPQ14764 893 aaKnown RBP22.16■■□□□ 1.14
PTP4A3-201ENST00000329397 MINK1Q8N4C8 1332 aaPredicted RBP22.16■■□□□ 1.14
PTP4A3-201ENST00000329397 SIGLEC1Q9BZZ2 1709 aa22.16■■□□□ 1.14
PTP4A3-201ENST00000329397 ANKRD36BQ8N2N9 1353 aa22.16■■□□□ 1.14
PTP4A3-201ENST00000329397 A0A1W2PP64 1363 aa22.15■■□□□ 1.14
PTP4A3-201ENST00000329397 FBLN1P23142 703 aa22.15■■□□□ 1.14
PTP4A3-201ENST00000329397 ZKSCAN2Q63HK3 967 aa22.14■■□□□ 1.14
PTP4A3-201ENST00000329397 DZIP1LQ8IYY4 767 aaKnown RBP22.14■■□□□ 1.14
PTP4A3-201ENST00000329397 CD109Q6YHK3 1445 aa22.14■■□□□ 1.13
PTP4A3-201ENST00000329397 ARXQ96QS3 562 aa22.14■■□□□ 1.13
PTP4A3-201ENST00000329397 RWDD1Q9H446 243 aaPredicted RBP22.14■■□□□ 1.13
PTP4A3-201ENST00000329397 POGZQ7Z3K3 1410 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 NPM1P06748 294 aaKnown RBP eCLIP22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 CCDC27Q2M243 656 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 ITPRIPQ8IWB1 547 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 ARHGEF28Q8N1W1 1705 aaKnown RBP22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 TRIM27P14373 513 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 IDI1Q13907 227 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 BECN1Q14457 450 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 SSH1Q8WYL5 1049 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 ABCC3O15438 1527 aa22.13■■□□□ 1.13
PTP4A3-201ENST00000329397 CAMSAP1Q5T5Y3 1602 aa22.12■■□□□ 1.13
PTP4A3-201ENST00000329397 TBC1D2Q9BYX2 928 aa22.12■■□□□ 1.13
PTP4A3-201ENST00000329397 TMPOP42166 694 aaKnown RBP22.11■■□□□ 1.13
PTP4A3-201ENST00000329397 TBC1D32Q96NH3 1257 aa22.11■■□□□ 1.13
PTP4A3-201ENST00000329397 UPF2Q9HAU5 1272 aaKnown RBP22.11■■□□□ 1.13
PTP4A3-201ENST00000329397 TRIM35Q9UPQ4 493 aa22.11■■□□□ 1.13
PTP4A3-201ENST00000329397 VGFO15240 615 aaPredicted RBP22.1■■□□□ 1.13
PTP4A3-201ENST00000329397 MFAP1P55081 439 aaKnown RBP22.1■■□□□ 1.13
PTP4A3-201ENST00000329397 HECW2Q9P2P5 1572 aa22.1■■□□□ 1.13
PTP4A3-201ENST00000329397 PLEKHF1Q96S99 279 aa22.09■■□□□ 1.13
PTP4A3-201ENST00000329397 USP32Q8NFA0 1604 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms