RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 ARHGEF28Q8N1W1 1705 aaKnown RBP16.46■□□□□ 0.23
RNF4-201ENST00000314289 APAF1O14727 1248 aa16.46■□□□□ 0.23
RNF4-201ENST00000314289 TULP4Q9NRJ4 1543 aa16.46■□□□□ 0.22
RNF4-201ENST00000314289 CEBPAP49715 358 aaPredicted RBP16.44■□□□□ 0.22
RNF4-201ENST00000314289 RNF123Q5XPI4 1314 aa16.44■□□□□ 0.22
RNF4-201ENST00000314289 ZMYM3Q14202 1370 aa16.44■□□□□ 0.22
RNF4-201ENST00000314289 NPC1L1Q9UHC9 1359 aa16.44■□□□□ 0.22
RNF4-201ENST00000314289 FANCIQ9NVI1 1328 aa16.44■□□□□ 0.22
RNF4-201ENST00000314289 RRP1P56182 461 aaKnown RBP16.43■□□□□ 0.22
RNF4-201ENST00000314289 NEUROD2Q15784 382 aa16.43■□□□□ 0.22
RNF4-201ENST00000314289 ERICH6BQ5W0A0 696 aa16.43■□□□□ 0.22
RNF4-201ENST00000314289 YTHDC2Q9H6S0 1430 aaKnown RBP16.43■□□□□ 0.22
RNF4-201ENST00000314289 PDE3BQ13370 1112 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 CCDC136Q96JN2 1154 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 AGLP35573 1532 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 EXOC6Q8TAG9 804 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 GGNBP2Q9H3C7 697 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 ZFYVE9O95405 1425 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 MTHFSP49914 203 aa16.42■□□□□ 0.22
RNF4-201ENST00000314289 A2ML1A8K2U0 1454 aa16.41■□□□□ 0.22
RNF4-201ENST00000314289 CGNL1Q0VF96 1302 aa16.41■□□□□ 0.22
RNF4-201ENST00000314289 RIMS2Q9UQ26 1411 aa16.41■□□□□ 0.22
RNF4-201ENST00000314289 TRHP20396 242 aaPredicted RBP16.4■□□□□ 0.22
RNF4-201ENST00000314289 CDK19Q9BWU1 502 aa16.4■□□□□ 0.22
RNF4-201ENST00000314289 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
RNF4-201ENST00000314289 SPINK5Q9NQ38 1064 aaPredicted RBP16.4■□□□□ 0.22
RNF4-201ENST00000314289 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
RNF4-201ENST00000314289 PTPRMP28827 1452 aa16.4■□□□□ 0.22
RNF4-201ENST00000314289 ARHGEF40Q8TER5 1519 aa16.4■□□□□ 0.22
RNF4-201ENST00000314289 ALKQ9UM73 1620 aa16.4■□□□□ 0.22
RNF4-201ENST00000314289 DMRT2Q9Y5R5 561 aa16.39■□□□□ 0.21
RNF4-201ENST00000314289 A0A1W2PP64 1363 aa16.39■□□□□ 0.21
RNF4-201ENST00000314289 TXNDC2Q86VQ3 553 aa16.39■□□□□ 0.21
RNF4-201ENST00000314289 CABP1Q9NZU7 370 aa16.38■□□□□ 0.21
RNF4-201ENST00000314289 REREQ9P2R6 1566 aa16.38■□□□□ 0.21
RNF4-201ENST00000314289 ANKRD36BQ8N2N9 1353 aa16.37■□□□□ 0.21
RNF4-201ENST00000314289 FBLN1P23142 703 aa16.37■□□□□ 0.21
RNF4-201ENST00000314289 GOLGA2Q08379 1002 aa16.37■□□□□ 0.21
RNF4-201ENST00000314289 DUSP27Q5VZP5 1158 aa16.36■□□□□ 0.21
RNF4-201ENST00000314289 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.36■□□□□ 0.21
RNF4-201ENST00000314289 SPATA31D1Q6ZQQ2 1576 aa16.36■□□□□ 0.21
RNF4-201ENST00000314289 NCKAP5LQ9HCH0 1330 aa16.35■□□□□ 0.21
RNF4-201ENST00000314289 METP08581 1390 aa16.35■□□□□ 0.21
RNF4-201ENST00000314289 C20orf194Q5TEA3 1177 aa16.35■□□□□ 0.21
RNF4-201ENST00000314289 ZNF521Q96K83 1311 aa16.33■□□□□ 0.21
RNF4-201ENST00000314289 INSRP06213 1382 aa16.33■□□□□ 0.2
RNF4-201ENST00000314289 NUTM2FA1L443 756 aa16.32■□□□□ 0.2
RNF4-201ENST00000314289 TNRQ92752 1358 aa16.32■□□□□ 0.2
RNF4-201ENST00000314289 FYB1O15117 783 aa16.32■□□□□ 0.2
RNF4-201ENST00000314289 POLR3AO14802 1390 aaPredicted RBP16.32■□□□□ 0.2
RNF4-201ENST00000314289 TERF2IPQ9NYB0 399 aa16.32■□□□□ 0.2
RNF4-201ENST00000314289 PPM1GO15355 546 aaPredicted RBP16.31■□□□□ 0.2
RNF4-201ENST00000314289 U2AF1L5P0DN76 240 aaPredicted RBP16.31■□□□□ 0.2
RNF4-201ENST00000314289 U2AF1Q01081 240 aaKnown RBP eCLIP16.31■□□□□ 0.2
RNF4-201ENST00000314289 U2SURPO15042 1029 aaKnown RBP16.3■□□□□ 0.2
RNF4-201ENST00000314289 SLFN5Q08AF3 891 aa16.3■□□□□ 0.2
RNF4-201ENST00000314289 CRBNQ96SW2 442 aa16.3■□□□□ 0.2
RNF4-201ENST00000314289 SLC26A8Q96RN1 970 aa16.3■□□□□ 0.2
RNF4-201ENST00000314289 PUS7Q96PZ0 661 aaKnown RBP16.3■□□□□ 0.2
RNF4-201ENST00000314289 TCP11L2Q8N4U5 519 aa16.29■□□□□ 0.2
RNF4-201ENST00000314289 CFAP53Q96M91 514 aa16.29■□□□□ 0.2
RNF4-201ENST00000314289 ATAD2Q6PL18 1390 aa16.29■□□□□ 0.2
RNF4-201ENST00000314289 LTKP29376 864 aa16.29■□□□□ 0.2
RNF4-201ENST00000314289 HDGFL2Q7Z4V5 671 aaPredicted RBP16.29■□□□□ 0.2
RNF4-201ENST00000314289 CD163L1Q9NR16 1453 aa16.28■□□□□ 0.2
RNF4-201ENST00000314289 SKAP1Q86WV1 359 aa16.28■□□□□ 0.2
RNF4-201ENST00000314289 ABCC11Q96J66 1382 aa16.28■□□□□ 0.2
RNF4-201ENST00000314289 WWC1Q8IX03 1113 aa16.27■□□□□ 0.2
RNF4-201ENST00000314289 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.27■□□□□ 0.2
RNF4-201ENST00000314289 BCAR3O75815 825 aa16.27■□□□□ 0.19
RNF4-201ENST00000314289 ZRANB1Q9UGI0 708 aa16.26■□□□□ 0.19
RNF4-201ENST00000314289 RUNDC1Q96C34 613 aa16.25■□□□□ 0.19
RNF4-201ENST00000314289 SHPRHQ149N8 1683 aa16.25■□□□□ 0.19
RNF4-201ENST00000314289 NBR1Q14596 966 aa16.25■□□□□ 0.19
RNF4-201ENST00000314289 TMEM2Q9UHN6 1383 aa16.24■□□□□ 0.19
RNF4-201ENST00000314289 NRXN3Q9Y4C0 1643 aa16.24■□□□□ 0.19
RNF4-201ENST00000314289 WASLO00401 505 aaPredicted RBP16.24■□□□□ 0.19
RNF4-201ENST00000314289 DEKP35659 375 aaKnown RBP16.24■□□□□ 0.19
RNF4-201ENST00000314289 HDGFP51858 240 aaKnown RBP16.22■□□□□ 0.19
RNF4-201ENST00000314289 NME9Q86XW9 330 aa16.22■□□□□ 0.19
RNF4-201ENST00000314289 SETD1AO15047 1707 aaKnown RBP16.22■□□□□ 0.19
RNF4-201ENST00000314289 E9PSI1 815 aa16.22■□□□□ 0.19
RNF4-201ENST00000314289 NUDT16Q96DE0 195 aaKnown RBP16.22■□□□□ 0.19
RNF4-201ENST00000314289 TRMT2AQ8IZ69 625 aaKnown RBP16.22■□□□□ 0.19
RNF4-201ENST00000314289 USP32Q8NFA0 1604 aa16.21■□□□□ 0.19
RNF4-201ENST00000314289 NSD2O96028 1365 aa16.21■□□□□ 0.19
RNF4-201ENST00000314289 NINLQ9Y2I6 1382 aa16.21■□□□□ 0.19
RNF4-201ENST00000314289 BCL2L13Q9BXK5 485 aa16.2■□□□□ 0.18
RNF4-201ENST00000314289 ROBO2Q9HCK4 1378 aa16.2■□□□□ 0.18
RNF4-201ENST00000314289 PPIP5K1Q6PFW1 1433 aa16.2■□□□□ 0.18
RNF4-201ENST00000314289 NOP58Q9Y2X3 529 aaKnown RBP16.19■□□□□ 0.18
RNF4-201ENST00000314289 NLRP1Q9C000 1473 aa16.19■□□□□ 0.18
RNF4-201ENST00000314289 NKTRP30414 1462 aaKnown RBP16.19■□□□□ 0.18
RNF4-201ENST00000314289 UBR1Q8IWV7 1749 aa16.18■□□□□ 0.18
RNF4-201ENST00000314289 PAK3O75914 559 aaPredicted RBP16.18■□□□□ 0.18
RNF4-201ENST00000314289 EMILIN1Q9Y6C2 1016 aa16.18■□□□□ 0.18
RNF4-201ENST00000314289 PRR36Q9H6K5 1346 aa16.18■□□□□ 0.18
RNF4-201ENST00000314289 FRAT1Q92837 279 aaPredicted RBP16.17■□□□□ 0.18
RNF4-201ENST00000314289 SOX12O15370 315 aa16.17■□□□□ 0.18
RNF4-201ENST00000314289 ADAMTS13Q76LX8 1427 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms