RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 RAB3GAP2Q9H2M9 1393 aa9.77□□□□□ -0.84
DEPDC4-201ENST00000299185 ANKRD50Q9ULJ7 1429 aa9.77□□□□□ -0.85
DEPDC4-201ENST00000299185 C2orf72A6NCS6 295 aa9.77□□□□□ -0.85
DEPDC4-201ENST00000299185 BCL11BQ9C0K0 894 aaPredicted RBP9.77□□□□□ -0.85
DEPDC4-201ENST00000299185 LHX6Q9UPM6 363 aa9.77□□□□□ -0.85
DEPDC4-201ENST00000299185 UNC13BO14795 1591 aa9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 REREQ9P2R6 1566 aa9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 RNF17Q9BXT8 1623 aaKnown RBP9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 MLECQ14165 292 aa9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 AXIN2Q9Y2T1 843 aa9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 PCDHGA4Q9Y5G9 962 aa9.76□□□□□ -0.85
DEPDC4-201ENST00000299185 EIF2AK4Q9P2K8 1649 aaKnown RBP9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 ERBINQ96RT1 1412 aa9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 SETD5Q9C0A6 1442 aa9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 POTEEQ6S8J3 1075 aa9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 CEP152O94986 1710 aa9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 DHX29Q7Z478 1369 aaKnown RBP9.75□□□□□ -0.85
DEPDC4-201ENST00000299185 ARHGAP33O14559 1287 aa9.74□□□□□ -0.85
DEPDC4-201ENST00000299185 RSPH4AQ5TD94 716 aa9.74□□□□□ -0.85
DEPDC4-201ENST00000299185 DEPDC5O75140 1603 aa9.74□□□□□ -0.85
DEPDC4-201ENST00000299185 AGLP35573 1532 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 PRDM15P57071 1507 aaPredicted RBP9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 KIF3BO15066 747 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 ADGRD1Q6QNK2 874 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 TMC2Q8TDI7 906 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 MFRPQ9BY79 579 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 STK24Q9Y6E0 443 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 MADDQ8WXG6 1647 aa9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 ARID4BQ4LE39 1312 aaPredicted RBP9.73□□□□□ -0.85
DEPDC4-201ENST00000299185 PZPP20742 1482 aa9.72□□□□□ -0.85
DEPDC4-201ENST00000299185 BCORL1Q5H9F3 1711 aa9.72□□□□□ -0.85
DEPDC4-201ENST00000299185 ABCC3O15438 1527 aa9.72□□□□□ -0.85
DEPDC4-201ENST00000299185 TK2O00142 265 aa9.71□□□□□ -0.86
DEPDC4-201ENST00000299185 VWDEQ8N2E2 1590 aa9.71□□□□□ -0.86
DEPDC4-201ENST00000299185 CLTCQ00610 1675 aaKnown RBP9.71□□□□□ -0.86
DEPDC4-201ENST00000299185 RIMS1Q86UR5 1692 aaKnown RBP9.71□□□□□ -0.86
DEPDC4-201ENST00000299185 GGT6Q6P531 493 aa9.7□□□□□ -0.86
DEPDC4-201ENST00000299185 KDM5DQ9BY66 1539 aa9.7□□□□□ -0.86
DEPDC4-201ENST00000299185 FAM135AQ9P2D6 1515 aa9.7□□□□□ -0.86
DEPDC4-201ENST00000299185 IQGAP3Q86VI3 1631 aa9.7□□□□□ -0.86
DEPDC4-201ENST00000299185 FER1L4A9Z1Z3 1794 aa9.7□□□□□ -0.86
DEPDC4-201ENST00000299185 CAMSAP1Q5T5Y3 1602 aa9.69□□□□□ -0.86
DEPDC4-201ENST00000299185 TRIM52Q96A61 297 aa9.69□□□□□ -0.86
DEPDC4-201ENST00000299185 ADAMTSL3P82987 1691 aa9.68□□□□□ -0.86
DEPDC4-201ENST00000299185 NUP155O75694 1391 aa9.68□□□□□ -0.86
DEPDC4-201ENST00000299185 EFCAB6Q5THR3 1501 aa9.67□□□□□ -0.86
DEPDC4-201ENST00000299185 STK25O00506 426 aa9.66□□□□□ -0.86
DEPDC4-201ENST00000299185 E9PCH4 1651 aa9.66□□□□□ -0.86
DEPDC4-201ENST00000299185 TET3O43151 1660 aa9.66□□□□□ -0.86
DEPDC4-201ENST00000299185 UGGT1Q9NYU2 1555 aa9.66□□□□□ -0.86
DEPDC4-201ENST00000299185 DHX57Q6P158 1386 aaKnown RBP9.65□□□□□ -0.86
DEPDC4-201ENST00000299185 ZC3H13Q5T200 1668 aaKnown RBP9.65□□□□□ -0.86
DEPDC4-201ENST00000299185 STAC3Q96MF2 364 aa9.65□□□□□ -0.86
DEPDC4-201ENST00000299185 LMTK2Q8IWU2 1503 aa9.64□□□□□ -0.87
DEPDC4-201ENST00000299185 NPATQ14207 1427 aa9.64□□□□□ -0.87
DEPDC4-201ENST00000299185 HRO43593 1189 aa9.63□□□□□ -0.87
DEPDC4-201ENST00000299185 CEBPAP49715 358 aaPredicted RBP9.63□□□□□ -0.87
DEPDC4-201ENST00000299185 C3P01024 1663 aa9.63□□□□□ -0.87
DEPDC4-201ENST00000299185 KANK1Q14678 1352 aa9.63□□□□□ -0.87
DEPDC4-201ENST00000299185 PTCD2Q8WV60 388 aaKnown RBP9.62□□□□□ -0.87
DEPDC4-201ENST00000299185 SYNMO15061 1565 aa9.62□□□□□ -0.87
DEPDC4-201ENST00000299185 PREX1Q8TCU6 1659 aa9.61□□□□□ -0.87
DEPDC4-201ENST00000299185 ERVK-7P63135 1459 aa9.61□□□□□ -0.87
DEPDC4-201ENST00000299185 PKD2Q13563 968 aa9.61□□□□□ -0.87
DEPDC4-201ENST00000299185 PLA2R1Q13018 1463 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 WASHC2CQ9Y4E1 1318 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 FBXO31Q5XUX0 539 aaPredicted RBP9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 MPHOSPH9Q99550 1183 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 MROH2AA6NES4 1674 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 CLTCL1P53675 1640 aa9.6□□□□□ -0.87
DEPDC4-201ENST00000299185 PTPRMP28827 1452 aa9.59□□□□□ -0.87
DEPDC4-201ENST00000299185 SPHKAPQ2M3C7 1700 aa9.59□□□□□ -0.87
DEPDC4-201ENST00000299185 RGS20O76081 388 aa9.59□□□□□ -0.87
DEPDC4-201ENST00000299185 KCTD12Q96CX2 325 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-201ENST00000299185 SPATA31D1Q6ZQQ2 1576 aa9.58□□□□□ -0.88
DEPDC4-201ENST00000299185 CFAP65Q6ZU64 1925 aaKnown RBP9.58□□□□□ -0.88
DEPDC4-201ENST00000299185 TBC1D12O60347 775 aa9.58□□□□□ -0.88
DEPDC4-201ENST00000299185 DMRTA1Q5VZB9 504 aa9.58□□□□□ -0.88
DEPDC4-201ENST00000299185 CNTLNQ9NXG0 1405 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 TRPM2O94759 1503 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 MYO3AQ8NEV4 1616 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 PPP1R37O75864 691 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 PSEN2P49810 448 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 ZMYM3Q14202 1370 aa9.57□□□□□ -0.88
DEPDC4-201ENST00000299185 NOS1P29475 1434 aa9.56□□□□□ -0.88
DEPDC4-201ENST00000299185 CERKQ8TCT0 537 aa9.56□□□□□ -0.88
DEPDC4-201ENST00000299185 ESF1Q9H501 851 aaKnown RBP9.56□□□□□ -0.88
DEPDC4-201ENST00000299185 ARHGAP31Q2M1Z3 1444 aa9.56□□□□□ -0.88
DEPDC4-201ENST00000299185 TNRQ92752 1358 aa9.55□□□□□ -0.88
DEPDC4-201ENST00000299185 ECM2O94769 699 aaPredicted RBP9.55□□□□□ -0.88
DEPDC4-201ENST00000299185 SIN3AQ96ST3 1273 aa9.55□□□□□ -0.88
DEPDC4-201ENST00000299185 PIK3C2BO00750 1634 aa9.55□□□□□ -0.88
DEPDC4-201ENST00000299185 ANKRD30BQ9BXX2 1392 aa9.54□□□□□ -0.88
DEPDC4-201ENST00000299185 CCER1Q8TC90 406 aaPredicted RBP9.54□□□□□ -0.88
DEPDC4-201ENST00000299185 PTPRTO14522 1441 aa9.54□□□□□ -0.88
DEPDC4-201ENST00000299185 RPRD2Q5VT52 1461 aaKnown RBP9.53□□□□□ -0.88
DEPDC4-201ENST00000299185 HRCP23327 699 aa9.53□□□□□ -0.88
DEPDC4-201ENST00000299185 FOXK1P85037 733 aa9.53□□□□□ -0.88
DEPDC4-201ENST00000299185 IFFO2Q5TF58 517 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms