RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 KCNA6P17658 529 aa26.27■■□□□ 1.8
PDLIM3-202ENST00000284770 DDX10Q13206 875 aaKnown RBP26.27■■□□□ 1.8
PDLIM3-202ENST00000284770 POLR3GLQ9BT43 218 aa26.25■■□□□ 1.79
PDLIM3-202ENST00000284770 MINK1Q8N4C8 1332 aaPredicted RBP26.25■■□□□ 1.79
PDLIM3-202ENST00000284770 EVC2Q86UK5 1308 aa26.24■■□□□ 1.79
PDLIM3-202ENST00000284770 TULP4Q9NRJ4 1543 aa26.2■■□□□ 1.79
PDLIM3-202ENST00000284770 NWD1Q149M9 1564 aa26.2■■□□□ 1.79
PDLIM3-202ENST00000284770 PUS7Q96PZ0 661 aaKnown RBP26.2■■□□□ 1.78
PDLIM3-202ENST00000284770 DMRT2Q9Y5R5 561 aa26.2■■□□□ 1.78
PDLIM3-202ENST00000284770 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.15■■□□□ 1.78
PDLIM3-202ENST00000284770 CDK19Q9BWU1 502 aa26.15■■□□□ 1.78
PDLIM3-202ENST00000284770 WASLO00401 505 aaPredicted RBP26.14■■□□□ 1.78
PDLIM3-202ENST00000284770 NKTRP30414 1462 aaKnown RBP26.13■■□□□ 1.77
PDLIM3-202ENST00000284770 SRPK2P78362 688 aaKnown RBP26.13■■□□□ 1.77
PDLIM3-202ENST00000284770 CABP2Q9NPB3 220 aa26.13■■□□□ 1.77
PDLIM3-202ENST00000284770 ADGRB2O60241 1585 aa26.12■■□□□ 1.77
PDLIM3-202ENST00000284770 AEBP2Q6ZN18 517 aaPredicted RBP26.12■■□□□ 1.77
PDLIM3-202ENST00000284770 PROSER2Q86WR7 435 aaPredicted RBP26.09■■□□□ 1.77
PDLIM3-202ENST00000284770 ATAD2Q6PL18 1390 aa26.08■■□□□ 1.77
PDLIM3-202ENST00000284770 MIER1Q8N108 512 aa26.07■■□□□ 1.76
PDLIM3-202ENST00000284770 STRCP1A6NGW2 1772 aa26.07■■□□□ 1.76
PDLIM3-202ENST00000284770 RBM33Q96EV2 1170 aaKnown RBP26.06■■□□□ 1.76
PDLIM3-202ENST00000284770 MYOM1P52179 1685 aa26.05■■□□□ 1.76
PDLIM3-202ENST00000284770 TMC1Q8TDI8 760 aa26.04■■□□□ 1.76
PDLIM3-202ENST00000284770 PANK3Q9H999 370 aa26.04■■□□□ 1.76
PDLIM3-202ENST00000284770 ZNF335Q9H4Z2 1342 aaPredicted RBP26.04■■□□□ 1.76
PDLIM3-202ENST00000284770 ADGRL3Q9HAR2 1447 aa26.04■■□□□ 1.76
PDLIM3-202ENST00000284770 NINLQ9Y2I6 1382 aa26.03■■□□□ 1.76
PDLIM3-202ENST00000284770 SLC12A5Q9H2X9 1139 aa26.02■■□□□ 1.76
PDLIM3-202ENST00000284770 NCOA3Q9Y6Q9 1424 aa26.02■■□□□ 1.76
PDLIM3-202ENST00000284770 NALCNQ8IZF0 1738 aa26.02■■□□□ 1.76
PDLIM3-202ENST00000284770 NUDT16Q96DE0 195 aaKnown RBP26.01■■□□□ 1.75
PDLIM3-202ENST00000284770 TMEM94Q12767 1356 aa26■■□□□ 1.75
PDLIM3-202ENST00000284770 C14orf37Q86TY3 774 aa26■■□□□ 1.75
PDLIM3-202ENST00000284770 CCDC61Q9Y6R9 512 aa25.99■■□□□ 1.75
PDLIM3-202ENST00000284770 CDC42BPGQ6DT37 1551 aa25.99■■□□□ 1.75
PDLIM3-202ENST00000284770 PER1O15534 1290 aaPredicted RBP25.98■■□□□ 1.75
PDLIM3-202ENST00000284770 ATP7BP35670 1465 aa25.98■■□□□ 1.75
PDLIM3-202ENST00000284770 PRR36Q9H6K5 1346 aa25.98■■□□□ 1.75
PDLIM3-202ENST00000284770 CABP1Q9NZU7 370 aa25.97■■□□□ 1.75
PDLIM3-202ENST00000284770 C19orf44Q9H6X5 657 aa25.97■■□□□ 1.75
PDLIM3-202ENST00000284770 NUTM2FA1L443 756 aa25.95■■□□□ 1.74
PDLIM3-202ENST00000284770 LRRC7Q96NW7 1537 aa25.94■■□□□ 1.74
PDLIM3-202ENST00000284770 PPIP5K1Q6PFW1 1433 aa25.94■■□□□ 1.74
PDLIM3-202ENST00000284770 ANKRD36BQ8N2N9 1353 aa25.94■■□□□ 1.74
PDLIM3-202ENST00000284770 ANKARQ7Z5J8 1434 aa25.93■■□□□ 1.74
PDLIM3-202ENST00000284770 FMN2Q9NZ56 1722 aa25.93■■□□□ 1.74
PDLIM3-202ENST00000284770 TERF2IPQ9NYB0 399 aa25.92■■□□□ 1.74
PDLIM3-202ENST00000284770 ANP32CO43423 234 aa25.92■■□□□ 1.74
PDLIM3-202ENST00000284770 CARD14Q9BXL6 1004 aa25.92■■□□□ 1.74
PDLIM3-202ENST00000284770 USP32Q8NFA0 1604 aa25.91■■□□□ 1.74
PDLIM3-202ENST00000284770 KNSTRNQ9Y448 316 aa25.91■■□□□ 1.74
PDLIM3-202ENST00000284770 CD163L1Q9NR16 1453 aa25.9■■□□□ 1.74
PDLIM3-202ENST00000284770 A0A1W2PP64 1363 aa25.9■■□□□ 1.74
PDLIM3-202ENST00000284770 TOPAZ1Q8N9V7 1692 aa25.89■■□□□ 1.74
PDLIM3-202ENST00000284770 PLEKHG3A1L390 1219 aa25.89■■□□□ 1.73
PDLIM3-202ENST00000284770 DCCP43146 1447 aa25.89■■□□□ 1.73
PDLIM3-202ENST00000284770 HDGFL2Q7Z4V5 671 aaPredicted RBP25.89■■□□□ 1.73
PDLIM3-202ENST00000284770 MSH6P52701 1360 aa25.87■■□□□ 1.73
PDLIM3-202ENST00000284770 XIRP1Q702N8 1843 aaKnown RBP25.87■■□□□ 1.73
PDLIM3-202ENST00000284770 CPSF1Q10570 1443 aaKnown RBP25.86■■□□□ 1.73
PDLIM3-202ENST00000284770 ATF3P18847 181 aa25.86■■□□□ 1.73
PDLIM3-202ENST00000284770 ITSN1Q15811 1721 aa25.85■■□□□ 1.73
PDLIM3-202ENST00000284770 NSD3Q9BZ95 1437 aa25.85■■□□□ 1.73
PDLIM3-202ENST00000284770 CADPS2Q86UW7 1296 aa25.84■■□□□ 1.73
PDLIM3-202ENST00000284770 AMER1Q5JTC6 1135 aaPredicted RBP25.84■■□□□ 1.73
PDLIM3-202ENST00000284770 PRKRIP1Q9H875 184 aaPredicted RBP25.84■■□□□ 1.73
PDLIM3-202ENST00000284770 ZNF692Q9BU19 519 aaPredicted RBP25.83■■□□□ 1.73
PDLIM3-202ENST00000284770 RGPD8O14715 1765 aaPredicted RBP25.82■■□□□ 1.72
PDLIM3-202ENST00000284770 LTBP4Q8N2S1 1624 aa25.82■■□□□ 1.72
PDLIM3-202ENST00000284770 ACEP12821 1306 aa25.82■■□□□ 1.72
PDLIM3-202ENST00000284770 KTN1Q86UP2 1357 aaKnown RBP25.81■■□□□ 1.72
PDLIM3-202ENST00000284770 NPC1L1Q9UHC9 1359 aa25.81■■□□□ 1.72
PDLIM3-202ENST00000284770 PMFBP1Q8TBY8 1022 aa25.81■■□□□ 1.72
PDLIM3-202ENST00000284770 POLR3AO14802 1390 aaPredicted RBP25.8■■□□□ 1.72
PDLIM3-202ENST00000284770 CNGB1Q14028 1251 aaPredicted RBP25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 CGNL1Q0VF96 1302 aa25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 ESCO1Q5FWF5 840 aa25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 CC2D1BQ5T0F9 858 aaKnown RBP25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 C1orf167Q5SNV9 1468 aa25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 MST1RQ04912 1400 aa25.79■■□□□ 1.72
PDLIM3-202ENST00000284770 PHF8Q9UPP1 1060 aa25.78■■□□□ 1.72
PDLIM3-202ENST00000284770 NGDNQ8NEJ9 315 aaKnown RBP25.77■■□□□ 1.72
PDLIM3-202ENST00000284770 AKAP12Q02952 1782 aa25.77■■□□□ 1.72
PDLIM3-202ENST00000284770 RALBP1Q15311 655 aa25.77■■□□□ 1.72
PDLIM3-202ENST00000284770 EDC4Q6P2E9 1401 aaKnown RBP25.76■■□□□ 1.71
PDLIM3-202ENST00000284770 ORAI2Q96SN7 254 aa25.75■■□□□ 1.71
PDLIM3-202ENST00000284770 PARD3Q8TEW0 1356 aa25.74■■□□□ 1.71
PDLIM3-202ENST00000284770 MON2Q7Z3U7 1717 aa25.74■■□□□ 1.71
PDLIM3-202ENST00000284770 USP6P35125 1406 aa25.73■■□□□ 1.71
PDLIM3-202ENST00000284770 NSD2O96028 1365 aa25.72■■□□□ 1.71
PDLIM3-202ENST00000284770 CCER2I3L3R5 266 aa25.72■■□□□ 1.71
PDLIM3-202ENST00000284770 FYB1O15117 783 aa25.71■■□□□ 1.71
PDLIM3-202ENST00000284770 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.7■■□□□ 1.7
PDLIM3-202ENST00000284770 SLAIN2Q9P270 581 aa25.69■■□□□ 1.7
PDLIM3-202ENST00000284770 SSH2Q76I76 1423 aa25.69■■□□□ 1.7
PDLIM3-202ENST00000284770 TTC21BQ7Z4L5 1316 aa25.68■■□□□ 1.7
PDLIM3-202ENST00000284770 NRKQ7Z2Y5 1582 aa25.67■■□□□ 1.7
PDLIM3-202ENST00000284770 KIF1AQ12756 1690 aa25.67■■□□□ 1.7
PDLIM3-202ENST00000284770 FOXO3O43524 673 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms