RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 BCAR3O75815 825 aa19.91■□□□□ 0.78
SH3RF1-201ENST00000284637 CEP89Q96ST8 783 aa19.91■□□□□ 0.78
SH3RF1-201ENST00000284637 LRRC9Q6ZRR7 1453 aa19.91■□□□□ 0.78
SH3RF1-201ENST00000284637 TRIM29Q14134 588 aa19.91■□□□□ 0.78
SH3RF1-201ENST00000284637 VPS53Q5VIR6 699 aa19.91■□□□□ 0.78
SH3RF1-201ENST00000284637 PPP2R1AP30153 589 aa19.9■□□□□ 0.78
SH3RF1-201ENST00000284637 G3BP1Q13283 466 aaKnown RBP eCLIP19.9■□□□□ 0.78
SH3RF1-201ENST00000284637 TSPYL4Q9UJ04 414 aa19.9■□□□□ 0.78
SH3RF1-201ENST00000284637 PRPF40AO75400 957 aaKnown RBP19.89■□□□□ 0.77
SH3RF1-201ENST00000284637 UQCRHLA0A096LP55 91 aa19.89■□□□□ 0.77
SH3RF1-201ENST00000284637 UQCRHP07919 91 aa19.89■□□□□ 0.77
SH3RF1-201ENST00000284637 TAF3Q5VWG9 929 aa19.89■□□□□ 0.77
SH3RF1-201ENST00000284637 MIA2Q96PC5 1412 aa19.88■□□□□ 0.77
SH3RF1-201ENST00000284637 CCDC73Q6ZRK6 1079 aa19.88■□□□□ 0.77
SH3RF1-201ENST00000284637 NEK4P51957 841 aa19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 PNISRQ8TF01 805 aaKnown RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 PTPRGP23470 1445 aa19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 EXOSC9Q06265 439 aaKnown RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 LRRFIP1Q32MZ4 808 aaKnown RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 IPO7O95373 1038 aaKnown RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 CCDC70Q6NSX1 233 aa19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 PCMTD1Q96MG8 357 aaPredicted RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 ARGLU1Q9NWB6 273 aaPredicted RBP19.87■□□□□ 0.77
SH3RF1-201ENST00000284637 CCDC27Q2M243 656 aa19.86■□□□□ 0.77
SH3RF1-201ENST00000284637 CABP2Q9NPB3 220 aa19.86■□□□□ 0.77
SH3RF1-201ENST00000284637 C1orf115Q9H7X2 142 aa19.86■□□□□ 0.77
SH3RF1-201ENST00000284637 TMEM132EQ6IEE7 984 aa19.86■□□□□ 0.77
SH3RF1-201ENST00000284637 NBPF8Q3BBV2 869 aa19.86■□□□□ 0.77
SH3RF1-201ENST00000284637 TTC5Q8N0Z6 440 aa19.85■□□□□ 0.77
SH3RF1-201ENST00000284637 MCM4P33991 863 aa19.85■□□□□ 0.77
SH3RF1-201ENST00000284637 MNS1Q8NEH6 495 aa19.85■□□□□ 0.77
SH3RF1-201ENST00000284637 ANKRD50Q9ULJ7 1429 aa19.85■□□□□ 0.77
SH3RF1-201ENST00000284637 ERC2O15083 957 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 PDE3AQ14432 1141 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 ZSCAN30Q86W11 494 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 TMX4Q9H1E5 349 aaPredicted RBP19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 SMARCA4P51532 1647 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 NBPF1Q3BBV0 1214 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 CWC15Q9P013 229 aaKnown RBP19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 TRDNQ13061 729 aa19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 SMG6Q86US8 1419 aaKnown RBP19.84■□□□□ 0.77
SH3RF1-201ENST00000284637 HSP90AB4PQ58FF6 505 aa19.83■□□□□ 0.76
SH3RF1-201ENST00000284637 DDX58O95786 925 aaKnown RBP19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 ANKRD20A12PQ8NF67 263 aa19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 MBD3O95983 291 aa19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 TSR2Q969E8 191 aaKnown RBP19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 G3V3G9 751 aa19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 DCAF8Q5TAQ9 597 aa19.82■□□□□ 0.76
SH3RF1-201ENST00000284637 UBTFL1P0CB47 393 aaPredicted RBP19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 FANCD2Q9BXW9 1451 aa19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 NFXL1Q6ZNB6 911 aa19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 SDF4Q9BRK5 362 aa19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 TRIM5Q9C035 493 aa19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 C11orf95C9JLR9 678 aaPredicted RBP19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 MPNDQ8N594 471 aa19.81■□□□□ 0.76
SH3RF1-201ENST00000284637 CFAP70Q5T0N1 1121 aa19.8■□□□□ 0.76
SH3RF1-201ENST00000284637 HOOK1Q9UJC3 728 aaKnown RBP19.8■□□□□ 0.76
SH3RF1-201ENST00000284637 NCOA2Q15596 1464 aa19.8■□□□□ 0.76
SH3RF1-201ENST00000284637 RABEP1Q15276 862 aa19.8■□□□□ 0.76
SH3RF1-201ENST00000284637 PATL2C9JE40 543 aaKnown RBP19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 TSPY26PQ9H489 355 aa19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 CUX1P39880 1505 aa19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 FIBPO43427 364 aa19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 NOB1Q9ULX3 412 aaKnown RBP19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 RRBP1Q9P2E9 1410 aaKnown RBP19.79■□□□□ 0.76
SH3RF1-201ENST00000284637 AIMP1Q12904 312 aaKnown RBP19.78■□□□□ 0.76
SH3RF1-201ENST00000284637 NEUROD6Q96NK8 337 aa19.78■□□□□ 0.76
SH3RF1-201ENST00000284637 SURF6O75683 361 aaKnown RBP19.78■□□□□ 0.76
SH3RF1-201ENST00000284637 STAC3Q96MF2 364 aa19.77■□□□□ 0.76
SH3RF1-201ENST00000284637 PRKAR2BP31323 418 aa19.77■□□□□ 0.75
SH3RF1-201ENST00000284637 ARAP1Q96P48 1450 aa19.77■□□□□ 0.75
SH3RF1-201ENST00000284637 FGD5Q6ZNL6 1462 aa19.76■□□□□ 0.75
SH3RF1-201ENST00000284637 PDILTQ8N807 584 aa19.75■□□□□ 0.75
SH3RF1-201ENST00000284637 CNTROBQ8N137 903 aa19.75■□□□□ 0.75
SH3RF1-201ENST00000284637 RALYLQ86SE5 291 aaKnown RBP19.75■□□□□ 0.75
SH3RF1-201ENST00000284637 SPC24Q8NBT2 197 aa19.75■□□□□ 0.75
SH3RF1-201ENST00000284637 GCC1Q96CN9 775 aa19.75■□□□□ 0.75
SH3RF1-201ENST00000284637 RAD54L2Q9Y4B4 1467 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 TWISTNBQ3B726 338 aaPredicted RBP19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 WWC1Q8IX03 1113 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 CALRP27797 417 aaKnown RBP19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 CCDC47Q96A33 483 aaKnown RBP19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 FMNL2Q96PY5 1086 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 FSD1Q9BTV5 496 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 NAT10Q9H0A0 1025 aaKnown RBP19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 WASHC4Q2M389 1173 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 RAD21O60216 631 aa19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 CLASRPQ8N2M8 674 aaKnown RBP19.74■□□□□ 0.75
SH3RF1-201ENST00000284637 SAFBQ15424 915 aaKnown RBP eCLIP19.73■□□□□ 0.75
SH3RF1-201ENST00000284637 RIC3Q7Z5B4 369 aa19.73■□□□□ 0.75
SH3RF1-201ENST00000284637 KDM4AO75164 1064 aa19.73■□□□□ 0.75
SH3RF1-201ENST00000284637 GNAI3P08754 354 aa19.73■□□□□ 0.75
SH3RF1-201ENST00000284637 PSMA5P28066 241 aa19.73■□□□□ 0.75
SH3RF1-201ENST00000284637 CLCN1P35523 988 aa19.72■□□□□ 0.75
SH3RF1-201ENST00000284637 MCM2P49736 904 aa19.72■□□□□ 0.75
SH3RF1-201ENST00000284637 LETM1O95202 739 aaPredicted RBP19.72■□□□□ 0.75
SH3RF1-201ENST00000284637 HSP90B2PQ58FF3 399 aa19.72■□□□□ 0.75
SH3RF1-201ENST00000284637 SKAP1Q86WV1 359 aa19.72■□□□□ 0.75
SH3RF1-201ENST00000284637 K7ELQ4 463 aaPredicted RBP19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms