RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 JCADQ9P266 1359 aa13.73□□□□□ -0.21
TPM3-201ENST00000271850 HDGFP51858 240 aaKnown RBP13.73□□□□□ -0.21
TPM3-201ENST00000271850 MKRN4PQ13434 485 aaPredicted RBP13.73□□□□□ -0.21
TPM3-201ENST00000271850 SETD1AO15047 1707 aaKnown RBP13.72□□□□□ -0.21
TPM3-201ENST00000271850 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.21
TPM3-201ENST00000271850 BRINP3Q76B58 766 aa13.7□□□□□ -0.22
TPM3-201ENST00000271850 MST1RQ04912 1400 aa13.7□□□□□ -0.22
TPM3-201ENST00000271850 SHPRHQ149N8 1683 aa13.69□□□□□ -0.22
TPM3-201ENST00000271850 CADPS2Q86UW7 1296 aa13.69□□□□□ -0.22
TPM3-201ENST00000271850 DCCP43146 1447 aa13.69□□□□□ -0.22
TPM3-201ENST00000271850 ASXL1Q8IXJ9 1541 aa13.69□□□□□ -0.22
TPM3-201ENST00000271850 NALCNQ8IZF0 1738 aa13.68□□□□□ -0.22
TPM3-201ENST00000271850 C14orf37Q86TY3 774 aa13.67□□□□□ -0.22
TPM3-201ENST00000271850 NHSL1Q5SYE7 1610 aa13.67□□□□□ -0.22
TPM3-201ENST00000271850 HFM1A2PYH4 1435 aa13.66□□□□□ -0.22
TPM3-201ENST00000271850 ADGRL3Q9HAR2 1447 aa13.65□□□□□ -0.22
TPM3-201ENST00000271850 GABBR2O75899 941 aa13.65□□□□□ -0.22
TPM3-201ENST00000271850 ATF3P18847 181 aa13.65□□□□□ -0.22
TPM3-201ENST00000271850 ZNF326Q5BKZ1 582 aaKnown RBP13.65□□□□□ -0.22
TPM3-201ENST00000271850 SPATA31A6Q5VVP1 1343 aa13.64□□□□□ -0.23
TPM3-201ENST00000271850 DDX17Q92841 729 aaKnown RBP13.64□□□□□ -0.23
TPM3-201ENST00000271850 KIF1BO60333 1816 aa13.64□□□□□ -0.23
TPM3-201ENST00000271850 SETD5Q9C0A6 1442 aa13.64□□□□□ -0.23
TPM3-201ENST00000271850 PRR29P0C7W0 189 aa13.63□□□□□ -0.23
TPM3-201ENST00000271850 PRAG1Q86YV5 1406 aa13.63□□□□□ -0.23
TPM3-201ENST00000271850 ROBO2Q9HCK4 1378 aa13.62□□□□□ -0.23
TPM3-201ENST00000271850 PTCH1Q13635 1447 aa13.62□□□□□ -0.23
TPM3-201ENST00000271850 PPLO60437 1756 aa13.6□□□□□ -0.23
TPM3-201ENST00000271850 CHADLQ6NUI6 762 aa13.6□□□□□ -0.23
TPM3-201ENST00000271850 LAMC1P11047 1609 aa13.6□□□□□ -0.23
TPM3-201ENST00000271850 C1orf167Q5SNV9 1468 aa13.6□□□□□ -0.23
TPM3-201ENST00000271850 PNPLA6Q8IY17 1366 aa13.58□□□□□ -0.23
TPM3-201ENST00000271850 NUTM2BA6NNL0 878 aaPredicted RBP13.56□□□□□ -0.24
TPM3-201ENST00000271850 NUTM2EB1AL46 878 aaPredicted RBP13.56□□□□□ -0.24
TPM3-201ENST00000271850 LHX8Q68G74 356 aa13.56□□□□□ -0.24
TPM3-201ENST00000271850 NUTM2AQ8IVF1 878 aaPredicted RBP13.56□□□□□ -0.24
TPM3-201ENST00000271850 TRIM52Q96A61 297 aa13.56□□□□□ -0.24
TPM3-201ENST00000271850 SPATA31E1Q6ZUB1 1445 aa13.56□□□□□ -0.24
TPM3-201ENST00000271850 MEX3CQ5U5Q3 659 aaKnown RBP13.55□□□□□ -0.24
TPM3-201ENST00000271850 ORAI2Q96SN7 254 aa13.55□□□□□ -0.24
TPM3-201ENST00000271850 ADGRF5Q8IZF2 1346 aa13.55□□□□□ -0.24
TPM3-201ENST00000271850 IFT172Q9UG01 1749 aa13.54□□□□□ -0.24
TPM3-201ENST00000271850 ZNF772Q68DY9 489 aaPredicted RBP13.54□□□□□ -0.24
TPM3-201ENST00000271850 AFF2P51816 1311 aa13.54□□□□□ -0.24
TPM3-201ENST00000271850 RPGRIP1LQ68CZ1 1315 aa13.54□□□□□ -0.24
TPM3-201ENST00000271850 VGFO15240 615 aaPredicted RBP13.53□□□□□ -0.24
TPM3-201ENST00000271850 UPF1Q92900 1129 aaKnown RBP eCLIP13.53□□□□□ -0.244e-9■■■■■ 41.9
TPM3-201ENST00000271850 SOS2Q07890 1332 aaPredicted RBP13.53□□□□□ -0.24
TPM3-201ENST00000271850 LRRC59Q96AG4 307 aaKnown RBP13.52□□□□□ -0.25
TPM3-201ENST00000271850 RGS12O14924 1447 aa13.52□□□□□ -0.25
TPM3-201ENST00000271850 CDK12Q9NYV4 1490 aaPredicted RBP13.52□□□□□ -0.25
TPM3-201ENST00000271850 CDC42BPGQ6DT37 1551 aa13.51□□□□□ -0.25
TPM3-201ENST00000271850 TECPR2O15040 1411 aa13.51□□□□□ -0.25
TPM3-201ENST00000271850 PLEKHH1Q9ULM0 1364 aa13.5□□□□□ -0.25
TPM3-201ENST00000271850 COL22A1Q8NFW1 1626 aaPredicted RBP13.5□□□□□ -0.25
TPM3-201ENST00000271850 PXDNQ92626 1479 aa13.49□□□□□ -0.25
TPM3-201ENST00000271850 PIK3C2GO75747 1445 aa13.49□□□□□ -0.25
TPM3-201ENST00000271850 RXRBP28702 533 aa13.49□□□□□ -0.25
TPM3-201ENST00000271850 C8orf37Q96NL8 207 aa13.49□□□□□ -0.25
TPM3-201ENST00000271850 CCDC144AA2RUR9 1427 aa13.48□□□□□ -0.25
TPM3-201ENST00000271850 MPHOSPH9Q99550 1183 aa13.48□□□□□ -0.25
TPM3-201ENST00000271850 MYOM2P54296 1465 aa13.48□□□□□ -0.25
TPM3-201ENST00000271850 KNDC1Q76NI1 1749 aa13.47□□□□□ -0.25
TPM3-201ENST00000271850 WAPLQ7Z5K2 1190 aa13.47□□□□□ -0.25
TPM3-201ENST00000271850 LRPPRCP42704 1394 aaKnown RBP13.46□□□□□ -0.25
TPM3-201ENST00000271850 ADAMTS2O95450 1211 aa13.46□□□□□ -0.25
TPM3-201ENST00000271850 RGL3Q3MIN7 710 aa13.46□□□□□ -0.25
TPM3-201ENST00000271850 TMEM132EQ6IEE7 984 aa13.46□□□□□ -0.25
TPM3-201ENST00000271850 NRXN1Q9ULB1 1477 aa13.46□□□□□ -0.25
TPM3-201ENST00000271850 QTRT2Q9H974 415 aaKnown RBP13.45□□□□□ -0.26
TPM3-201ENST00000271850 ABCC11Q96J66 1382 aa13.45□□□□□ -0.26
TPM3-201ENST00000271850 SRCAPQ6ZRS2 3230 aa13.44□□□□□ -0.26
TPM3-201ENST00000271850 CD44P16070 742 aaKnown RBP13.44□□□□□ -0.26
TPM3-201ENST00000271850 FMN2Q9NZ56 1722 aa13.44□□□□□ -0.26
TPM3-201ENST00000271850 EP400Q96L91 3159 aa13.44□□□□□ -0.26
TPM3-201ENST00000271850 ANKRD30BQ9BXX2 1392 aa13.44□□□□□ -0.26
TPM3-201ENST00000271850 ATRNO75882 1429 aa13.43□□□□□ -0.26
TPM3-201ENST00000271850 XPCQ01831 940 aaPredicted RBP13.43□□□□□ -0.26
TPM3-201ENST00000271850 YTHDC2Q9H6S0 1430 aaKnown RBP13.43□□□□□ -0.26
TPM3-201ENST00000271850 STK26Q9P289 416 aa13.43□□□□□ -0.26
TPM3-201ENST00000271850 CLCN6P51797 869 aa13.42□□□□□ -0.26
TPM3-201ENST00000271850 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
TPM3-201ENST00000271850 FNBP4Q8N3X1 1017 aaPredicted RBP13.42□□□□□ -0.26
TPM3-201ENST00000271850 BCL9LQ86UU0 1499 aa13.42□□□□□ -0.26
TPM3-201ENST00000271850 NUTM2FA1L443 756 aa13.41□□□□□ -0.26
TPM3-201ENST00000271850 FOXO3O43524 673 aa13.41□□□□□ -0.26
TPM3-201ENST00000271850 ESCO1Q5FWF5 840 aa13.41□□□□□ -0.26
TPM3-201ENST00000271850 FARP1Q9Y4F1 1045 aaPredicted RBP13.41□□□□□ -0.26
TPM3-201ENST00000271850 MARF1Q9Y4F3 1742 aaKnown RBP13.4□□□□□ -0.26
TPM3-201ENST00000271850 NGLY1Q96IV0 654 aa13.4□□□□□ -0.26
TPM3-201ENST00000271850 NPHP3Q7Z494 1330 aa13.39□□□□□ -0.27
TPM3-201ENST00000271850 USP21Q9UK80 565 aa13.39□□□□□ -0.27
TPM3-201ENST00000271850 RGPD8O14715 1765 aaPredicted RBP13.38□□□□□ -0.27
TPM3-201ENST00000271850 ADGRB1O14514 1584 aa13.38□□□□□ -0.27
TPM3-201ENST00000271850 CFAP70Q5T0N1 1121 aa13.38□□□□□ -0.27
TPM3-201ENST00000271850 C14orf93Q9H972 538 aaKnown RBP13.38□□□□□ -0.27
TPM3-201ENST00000271850 USP32Q8NFA0 1604 aa13.38□□□□□ -0.27
TPM3-201ENST00000271850 RAB3GAP2Q9H2M9 1393 aa13.37□□□□□ -0.27
TPM3-201ENST00000271850 SLIT2O94813 1529 aa13.36□□□□□ -0.27
TPM3-201ENST00000271850 KIF1AQ12756 1690 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms