RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 LNPKQ9C0E8 428 aa20.63■□□□□ 0.89
PHRF1-201ENST00000264555 BCAR3O75815 825 aa20.63■□□□□ 0.89
PHRF1-201ENST00000264555 GNL2Q13823 731 aaKnown RBP20.63■□□□□ 0.89
PHRF1-201ENST00000264555 TCOF1Q13428 1488 aaKnown RBP20.62■□□□□ 0.89
PHRF1-201ENST00000264555 NEXNQ0ZGT2 675 aa20.62■□□□□ 0.89
PHRF1-201ENST00000264555 CFAP43Q8NDM7 1665 aa20.62■□□□□ 0.89
PHRF1-201ENST00000264555 CSPP1Q1MSJ5 1256 aa20.62■□□□□ 0.89
PHRF1-201ENST00000264555 C9orf78Q9NZ63 289 aaPredicted RBP20.62■□□□□ 0.89
PHRF1-201ENST00000264555 ATP10BO94823 1461 aa20.62■□□□□ 0.89
PHRF1-201ENST00000264555 NECTIN2Q92692 538 aa20.61■□□□□ 0.89
PHRF1-201ENST00000264555 TTC5Q8N0Z6 440 aa20.61■□□□□ 0.89
PHRF1-201ENST00000264555 RTEL1-TNFRSF6BF6WH68 1400 aa20.6■□□□□ 0.89
PHRF1-201ENST00000264555 NSD3Q9BZ95 1437 aa20.6■□□□□ 0.89
PHRF1-201ENST00000264555 GSE1Q14687 1217 aa20.6■□□□□ 0.89
PHRF1-201ENST00000264555 HSP90B1P14625 803 aaKnown RBP20.59■□□□□ 0.89
PHRF1-201ENST00000264555 DRC7Q8IY82 874 aa20.59■□□□□ 0.89
PHRF1-201ENST00000264555 DDX58O95786 925 aaKnown RBP20.58■□□□□ 0.89
PHRF1-201ENST00000264555 ADAMTS12P58397 1594 aa20.58■□□□□ 0.89
PHRF1-201ENST00000264555 GAS2L2Q8NHY3 880 aa20.58■□□□□ 0.89
PHRF1-201ENST00000264555 SLFN5Q08AF3 891 aa20.58■□□□□ 0.88
PHRF1-201ENST00000264555 CHAF1AQ13111 956 aaPredicted RBP20.58■□□□□ 0.88
PHRF1-201ENST00000264555 TSR2Q969E8 191 aaKnown RBP20.58■□□□□ 0.88
PHRF1-201ENST00000264555 C22orf23Q9BZE7 217 aa20.58■□□□□ 0.88
PHRF1-201ENST00000264555 SKOR2Q2VWA4 1001 aaPredicted RBP20.58■□□□□ 0.88
PHRF1-201ENST00000264555 ITSN2Q9NZM3 1697 aa20.57■□□□□ 0.88
PHRF1-201ENST00000264555 INTS3Q68E01 1043 aaKnown RBP20.57■□□□□ 0.88
PHRF1-201ENST00000264555 TWISTNBQ3B726 338 aaPredicted RBP20.56■□□□□ 0.88
PHRF1-201ENST00000264555 CHMP5Q9NZZ3 219 aa20.56■□□□□ 0.88
PHRF1-201ENST00000264555 THEMISQ8N1K5 641 aaPredicted RBP20.56■□□□□ 0.88
PHRF1-201ENST00000264555 DIAPH3Q9NSV4 1193 aa20.56■□□□□ 0.88
PHRF1-201ENST00000264555 RUFY2Q8WXA3 655 aa20.56■□□□□ 0.88
PHRF1-201ENST00000264555 FAM135AQ9P2D6 1515 aa20.56■□□□□ 0.88
PHRF1-201ENST00000264555 FANCAO15360 1455 aa20.55■□□□□ 0.88
PHRF1-201ENST00000264555 NUTM2GQ5VZR2 741 aa20.55■□□□□ 0.88
PHRF1-201ENST00000264555 SCAF11Q99590 1463 aaKnown RBP20.55■□□□□ 0.88
PHRF1-201ENST00000264555 ADGRF5Q8IZF2 1346 aa20.55■□□□□ 0.88
PHRF1-201ENST00000264555 CCDC9Q9Y3X0 531 aaKnown RBP20.55■□□□□ 0.88
PHRF1-201ENST00000264555 KIAA0556O60303 1618 aa20.55■□□□□ 0.88
PHRF1-201ENST00000264555 WWC1Q8IX03 1113 aa20.55■□□□□ 0.88
PHRF1-201ENST00000264555 NOB1Q9ULX3 412 aaKnown RBP20.55■□□□□ 0.88
PHRF1-201ENST00000264555 PDZRN3Q9UPQ7 1066 aa20.54■□□□□ 0.88
PHRF1-201ENST00000264555 WDR62O43379 1518 aa20.54■□□□□ 0.88
PHRF1-201ENST00000264555 HSP90AB4PQ58FF6 505 aa20.54■□□□□ 0.88
PHRF1-201ENST00000264555 ABTB2Q8N961 1025 aa20.54■□□□□ 0.88
PHRF1-201ENST00000264555 DHX29Q7Z478 1369 aaKnown RBP20.53■□□□□ 0.88
PHRF1-201ENST00000264555 EVA1CP58658 441 aa20.53■□□□□ 0.88
PHRF1-201ENST00000264555 PHF14O94880 888 aa20.53■□□□□ 0.88
PHRF1-201ENST00000264555 FCHSD2O94868 740 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 KIAA2012Q0VF49 1180 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 RAPGEF4Q8WZA2 1011 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 GPRASP1Q5JY77 1395 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 IFIT2P09913 472 aaKnown RBP20.52■□□□□ 0.88
PHRF1-201ENST00000264555 KIF3AQ9Y496 699 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 BACH2Q9BYV9 841 aa20.52■□□□□ 0.88
PHRF1-201ENST00000264555 DDX49Q9Y6V7 483 aaKnown RBP20.52■□□□□ 0.88
PHRF1-201ENST00000264555 PLCH2O75038 1416 aa20.52■□□□□ 0.87
PHRF1-201ENST00000264555 CDC45O75419 566 aa20.51■□□□□ 0.87
PHRF1-201ENST00000264555 CCDC30Q5VVM6 783 aa20.51■□□□□ 0.87
PHRF1-201ENST00000264555 SULT6B1Q6IMI4 303 aa20.51■□□□□ 0.87
PHRF1-201ENST00000264555 ATF3P18847 181 aa20.5■□□□□ 0.87
PHRF1-201ENST00000264555 FOXD4L5Q5VV16 416 aaPredicted RBP20.5■□□□□ 0.87
PHRF1-201ENST00000264555 FOXD4L4Q8WXT5 416 aaPredicted RBP20.5■□□□□ 0.87
PHRF1-201ENST00000264555 ATF7IPQ6VMQ6 1270 aa20.5■□□□□ 0.87
PHRF1-201ENST00000264555 RALGAPBQ86X10 1494 aa20.5■□□□□ 0.87
PHRF1-201ENST00000264555 GCC1Q96CN9 775 aa20.5■□□□□ 0.87
PHRF1-201ENST00000264555 ATP6V1DQ9Y5K8 247 aa20.5■□□□□ 0.87
PHRF1-201ENST00000264555 MVPQ14764 893 aaKnown RBP20.49■□□□□ 0.87
PHRF1-201ENST00000264555 GNAI3P08754 354 aa20.49■□□□□ 0.87
PHRF1-201ENST00000264555 UBTFL1P0CB47 393 aaPredicted RBP20.49■□□□□ 0.87
PHRF1-201ENST00000264555 G3BP1Q13283 466 aaKnown RBP eCLIP20.49■□□□□ 0.877e-7■■■■□ 25.3
PHRF1-201ENST00000264555 ZKSCAN1P17029 563 aaPredicted RBP20.48■□□□□ 0.87
PHRF1-201ENST00000264555 ANO2Q9NQ90 1003 aa20.48■□□□□ 0.87
PHRF1-201ENST00000264555 DISP3Q9P2K9 1392 aa20.48■□□□□ 0.87
PHRF1-201ENST00000264555 DUOX2Q9NRD8 1548 aa20.47■□□□□ 0.87
PHRF1-201ENST00000264555 ZNF428Q96B54 188 aa20.47■□□□□ 0.87
PHRF1-201ENST00000264555 CHMP4CQ96CF2 233 aa20.47■□□□□ 0.87
PHRF1-201ENST00000264555 CCDC61Q9Y6R9 512 aa20.47■□□□□ 0.87
PHRF1-201ENST00000264555 TMPOP42166 694 aaKnown RBP20.46■□□□□ 0.87
PHRF1-201ENST00000264555 LRRFIP1Q32MZ4 808 aaKnown RBP20.46■□□□□ 0.87
PHRF1-201ENST00000264555 ESCO1Q5FWF5 840 aa20.46■□□□□ 0.87
PHRF1-201ENST00000264555 C14orf93Q9H972 538 aaKnown RBP20.45■□□□□ 0.86
PHRF1-201ENST00000264555 NUDT16Q96DE0 195 aaKnown RBP20.45■□□□□ 0.86
PHRF1-201ENST00000264555 NLRP2Q9NX02 1062 aa20.45■□□□□ 0.86
PHRF1-201ENST00000264555 ERC2O15083 957 aa20.45■□□□□ 0.86
PHRF1-201ENST00000264555 IDI1Q13907 227 aa20.45■□□□□ 0.86
PHRF1-201ENST00000264555 NOS1P29475 1434 aa20.45■□□□□ 0.86
PHRF1-201ENST00000264555 PLEKHO1Q53GL0 409 aaPredicted RBP20.44■□□□□ 0.86
PHRF1-201ENST00000264555 NFKBIBQ15653 356 aa20.44■□□□□ 0.86
PHRF1-201ENST00000264555 POGZQ7Z3K3 1410 aa20.44■□□□□ 0.86
PHRF1-201ENST00000264555 SLC26A8Q96RN1 970 aa20.43■□□□□ 0.86
PHRF1-201ENST00000264555 DENND4BO75064 1496 aaPredicted RBP20.43■□□□□ 0.86
PHRF1-201ENST00000264555 SYCP2Q9BX26 1530 aa20.43■□□□□ 0.86
PHRF1-201ENST00000264555 NFE2L2Q16236 605 aa20.43■□□□□ 0.86
PHRF1-201ENST00000264555 NUCB2P80303 420 aa20.42■□□□□ 0.86
PHRF1-201ENST00000264555 NUP160Q12769 1436 aa20.42■□□□□ 0.86
PHRF1-201ENST00000264555 KDM5BQ9UGL1 1544 aa20.42■□□□□ 0.86
PHRF1-201ENST00000264555 SLC4A2P04920 1241 aa20.42■□□□□ 0.86
PHRF1-201ENST00000264555 RRS1Q15050 365 aaKnown RBP20.42■□□□□ 0.86
PHRF1-201ENST00000264555 RIC3Q7Z5B4 369 aa20.42■□□□□ 0.86
PHRF1-201ENST00000264555 GTF2E1P29083 439 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms