RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 SHPRHQ149N8 1683 aa19.78■□□□□ 0.76
DDX56-201ENST00000258772 CD109Q6YHK3 1445 aa19.77■□□□□ 0.76
DDX56-201ENST00000258772 PPM1GO15355 546 aaPredicted RBP19.76■□□□□ 0.75
DDX56-201ENST00000258772 TNNT2P45379 298 aaPredicted RBP19.76■□□□□ 0.75
DDX56-201ENST00000258772 PDE3AQ14432 1141 aa19.76■□□□□ 0.75
DDX56-201ENST00000258772 USP35Q9P2H5 1018 aa19.76■□□□□ 0.75
DDX56-201ENST00000258772 CFAP74Q9C0B2 1584 aa19.76■□□□□ 0.75
DDX56-201ENST00000258772 RUNDC1Q96C34 613 aa19.75■□□□□ 0.75
DDX56-201ENST00000258772 RGS3P49796 1198 aa19.75■□□□□ 0.75
DDX56-201ENST00000258772 CGNL1Q0VF96 1302 aa19.75■□□□□ 0.75
DDX56-201ENST00000258772 NEFMP07197 916 aa19.74■□□□□ 0.75
DDX56-201ENST00000258772 HECW2Q9P2P5 1572 aa19.74■□□□□ 0.75
DDX56-201ENST00000258772 ABCC3O15438 1527 aa19.73■□□□□ 0.75
DDX56-201ENST00000258772 USP32Q8NFA0 1604 aa19.73■□□□□ 0.75
DDX56-201ENST00000258772 NINLQ9Y2I6 1382 aa19.72■□□□□ 0.75
DDX56-201ENST00000258772 IGHDP01880 384 aa19.72■□□□□ 0.75
DDX56-201ENST00000258772 NEUROD2Q15784 382 aa19.72■□□□□ 0.75
DDX56-201ENST00000258772 TCP11L2Q8N4U5 519 aa19.72■□□□□ 0.75
DDX56-201ENST00000258772 MTHFSP49914 203 aa19.71■□□□□ 0.75
DDX56-201ENST00000258772 PUS7Q96PZ0 661 aaKnown RBP19.71■□□□□ 0.75
DDX56-201ENST00000258772 PHF23Q9BUL5 403 aaPredicted RBP19.71■□□□□ 0.75
DDX56-201ENST00000258772 RRP7AQ9Y3A4 280 aaKnown RBP19.71■□□□□ 0.75
DDX56-201ENST00000258772 IQSEC2Q5JU85 1478 aa19.7■□□□□ 0.74
DDX56-201ENST00000258772 EVC2Q86UK5 1308 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 VGFO15240 615 aaPredicted RBP19.69■□□□□ 0.74
DDX56-201ENST00000258772 CANXP27824 592 aaKnown RBP19.69■□□□□ 0.74
DDX56-201ENST00000258772 WDR63Q8IWG1 891 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 PANK1Q8TE04 598 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 CLUAP1Q96AJ1 413 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 SIGLEC1Q9BZZ2 1709 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 GLI2P10070 1586 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 COG6Q9Y2V7 657 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 CAMSAP1Q5T5Y3 1602 aa19.69■□□□□ 0.74
DDX56-201ENST00000258772 CFAP53Q96M91 514 aa19.68■□□□□ 0.74
DDX56-201ENST00000258772 RARSP54136 660 aaKnown RBP19.68■□□□□ 0.74
DDX56-201ENST00000258772 NUTM2DQ5VT03 806 aaPredicted RBP19.68■□□□□ 0.74
DDX56-201ENST00000258772 ARHGEF28Q8N1W1 1705 aaKnown RBP19.67■□□□□ 0.74
DDX56-201ENST00000258772 SLC4A3P48751 1232 aa19.67■□□□□ 0.74
DDX56-201ENST00000258772 CCDC27Q2M243 656 aa19.67■□□□□ 0.74
DDX56-201ENST00000258772 ANKRD36BQ8N2N9 1353 aa19.66■□□□□ 0.74
DDX56-201ENST00000258772 PIK3C2BO00750 1634 aa19.66■□□□□ 0.74
DDX56-201ENST00000258772 FRAT1Q92837 279 aaPredicted RBP19.65■□□□□ 0.74
DDX56-201ENST00000258772 NEXMIFQ5QGS0 1516 aa19.65■□□□□ 0.74
DDX56-201ENST00000258772 TULP4Q9NRJ4 1543 aa19.65■□□□□ 0.74
DDX56-201ENST00000258772 NSD2O96028 1365 aa19.64■□□□□ 0.74
DDX56-201ENST00000258772 RAPGEF3O95398 923 aa19.64■□□□□ 0.74
DDX56-201ENST00000258772 NCBP3Q53F19 620 aaKnown RBP19.63■□□□□ 0.73
DDX56-201ENST00000258772 OSCARQ8IYS5 282 aa19.63■□□□□ 0.73
DDX56-201ENST00000258772 AAMPQ13685 434 aa19.62■□□□□ 0.73
DDX56-201ENST00000258772 CABP2Q9NPB3 220 aa19.62■□□□□ 0.73
DDX56-201ENST00000258772 VIRMAQ69YN4 1812 aaKnown RBP19.62■□□□□ 0.73
DDX56-201ENST00000258772 IDI1Q13907 227 aa19.61■□□□□ 0.73
DDX56-201ENST00000258772 NEO1Q92859 1461 aa19.61■□□□□ 0.73
DDX56-201ENST00000258772 MAPK8IP3Q9UPT6 1336 aa19.6■□□□□ 0.73
DDX56-201ENST00000258772 U2AF1L5P0DN76 240 aaPredicted RBP19.6■□□□□ 0.73
DDX56-201ENST00000258772 U2AF1Q01081 240 aaKnown RBP eCLIP19.6■□□□□ 0.73
DDX56-201ENST00000258772 ARHGAP31Q2M1Z3 1444 aa19.6■□□□□ 0.73
DDX56-201ENST00000258772 RLBP1P12271 317 aa19.59■□□□□ 0.73
DDX56-201ENST00000258772 NFKBIBQ15653 356 aa19.59■□□□□ 0.73
DDX56-201ENST00000258772 DIP2CQ9Y2E4 1556 aa19.59■□□□□ 0.73
DDX56-201ENST00000258772 SAFB2Q14151 953 aaKnown RBP eCLIP19.58■□□□□ 0.73
DDX56-201ENST00000258772 PMFBP1Q8TBY8 1022 aa19.58■□□□□ 0.73
DDX56-201ENST00000258772 MYH16Q9H6N6 1097 aa19.58■□□□□ 0.73
DDX56-201ENST00000258772 ZFYVE9O95405 1425 aa19.58■□□□□ 0.72
DDX56-201ENST00000258772 BCL2L13Q9BXK5 485 aa19.57■□□□□ 0.72
DDX56-201ENST00000258772 TNNQ9UQP3 1299 aa19.57■□□□□ 0.72
DDX56-201ENST00000258772 PCDHB15Q9Y5E8 787 aa19.57■□□□□ 0.72
DDX56-201ENST00000258772 SLC52A1Q9NWF4 448 aa19.57■□□□□ 0.72
DDX56-201ENST00000258772 USP19O94966 1318 aa19.56■□□□□ 0.72
DDX56-201ENST00000258772 ADGRB2O60241 1585 aa19.56■□□□□ 0.72
DDX56-201ENST00000258772 A0A1W2PP64 1363 aa19.55■□□□□ 0.72
DDX56-201ENST00000258772 ABCC11Q96J66 1382 aa19.55■□□□□ 0.72
DDX56-201ENST00000258772 STK26Q9P289 416 aa19.55■□□□□ 0.72
DDX56-201ENST00000258772 SRPK2P78362 688 aaKnown RBP19.54■□□□□ 0.72
DDX56-201ENST00000258772 MYO5BQ9ULV0 1848 aa19.54■□□□□ 0.72
DDX56-201ENST00000258772 SEC24BO95487 1268 aa19.52■□□□□ 0.72
DDX56-201ENST00000258772 PLEKHF1Q96S99 279 aa19.52■□□□□ 0.72
DDX56-201ENST00000258772 GGNBP2Q9H3C7 697 aa19.52■□□□□ 0.71
DDX56-201ENST00000258772 RICTORQ6R327 1708 aa19.51■□□□□ 0.71
DDX56-201ENST00000258772 CT47B1P0C2W7 299 aaPredicted RBP19.51■□□□□ 0.71
DDX56-201ENST00000258772 RWDD1Q9H446 243 aaPredicted RBP19.51■□□□□ 0.71
DDX56-201ENST00000258772 SENP3Q9H4L4 574 aaPredicted RBP19.51■□□□□ 0.71
DDX56-201ENST00000258772 U2SURPO15042 1029 aaKnown RBP19.5■□□□□ 0.71
DDX56-201ENST00000258772 MVPQ14764 893 aaKnown RBP19.5■□□□□ 0.71
DDX56-201ENST00000258772 ZKSCAN2Q63HK3 967 aa19.5■□□□□ 0.71
DDX56-201ENST00000258772 PTPRMP28827 1452 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 ATAD2Q6PL18 1390 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 FYB1O15117 783 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 TMPOP42166 694 aaKnown RBP19.49■□□□□ 0.71
DDX56-201ENST00000258772 TERF2IPQ9NYB0 399 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 PDZRN3Q9UPQ7 1066 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 TMEM131LA2VDJ0 1609 aa19.49■□□□□ 0.71
DDX56-201ENST00000258772 YEATS2Q9ULM3 1422 aa19.48■□□□□ 0.71
DDX56-201ENST00000258772 GSE1Q14687 1217 aa19.48■□□□□ 0.71
DDX56-201ENST00000258772 TSR2Q969E8 191 aaKnown RBP19.48■□□□□ 0.71
DDX56-201ENST00000258772 TRIM35Q9UPQ4 493 aa19.48■□□□□ 0.71
DDX56-201ENST00000258772 COL3A1P02461 1466 aaPredicted RBP19.48■□□□□ 0.71
DDX56-201ENST00000258772 MINK1Q8N4C8 1332 aaPredicted RBP19.48■□□□□ 0.71
DDX56-201ENST00000258772 ZMYM3Q14202 1370 aa19.48■□□□□ 0.71
DDX56-201ENST00000258772 DZIP1LQ8IYY4 767 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 266.7 ms