RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 IFIT2P09913 472 aaKnown RBP9.1□□□□□ -0.95
RIF1-201ENST00000243326 IGSF3O75054 1194 aa9.1□□□□□ -0.95
RIF1-201ENST00000243326 PPFIA3O75145 1194 aa9.1□□□□□ -0.95
RIF1-201ENST00000243326 CAGE1Q8TC20 777 aa9.1□□□□□ -0.95
RIF1-201ENST00000243326 CHMP4AQ9BY43 222 aa9.1□□□□□ -0.95
RIF1-201ENST00000243326 TEX35Q5T0J7 233 aa9.1□□□□□ -0.95
RIF1-201ENST00000243326 C9orf78Q9NZ63 289 aaPredicted RBP9.1□□□□□ -0.95
RIF1-201ENST00000243326 SYCE3A1L190 88 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 ZMYND15Q9H091 742 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 DDX19BQ9UMR2 479 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 FKBP5Q13451 457 aaPredicted RBP9.09□□□□□ -0.95
RIF1-201ENST00000243326 PRDM2Q13029 1718 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 PHLDB1Q86UU1 1377 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 CCDC173Q0VFZ6 552 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 NFXL1Q6ZNB6 911 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 TERF2IPQ9NYB0 399 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 ZNF830Q96NB3 372 aaPredicted RBP9.09□□□□□ -0.95
RIF1-201ENST00000243326 NBPF1Q3BBV0 1214 aa9.09□□□□□ -0.95
RIF1-201ENST00000243326 CAMK4Q16566 473 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 REC8O95072 547 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 DNAJC2Q99543 621 aaKnown RBP9.08□□□□□ -0.96
RIF1-201ENST00000243326 CDC45O75419 566 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 MCM4P33991 863 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 EIF3AQ14152 1382 aaKnown RBP9.08□□□□□ -0.96
RIF1-201ENST00000243326 SSFA2P28290 1259 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 NEUROD6Q96NK8 337 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 NBPF8Q3BBV2 869 aa9.08□□□□□ -0.96
RIF1-201ENST00000243326 RUNDC1Q96C34 613 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 DIAPH1O60610 1272 aaKnown RBP9.07□□□□□ -0.96
RIF1-201ENST00000243326 AXDND1Q5T1B0 1012 aaPredicted RBP9.07□□□□□ -0.96
RIF1-201ENST00000243326 TRIM34Q9BYJ4 488 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 CGNQ9P2M7 1197 aaKnown RBP9.07□□□□□ -0.96
RIF1-201ENST00000243326 MEX3CQ5U5Q3 659 aaKnown RBP9.07□□□□□ -0.96
RIF1-201ENST00000243326 INTS3Q68E01 1043 aaKnown RBP9.07□□□□□ -0.96
RIF1-201ENST00000243326 GPS2Q13227 327 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 CCDC144AA2RUR9 1427 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 ESPNB1AK53 854 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 GDPD2Q9HCC8 539 aa9.07□□□□□ -0.96
RIF1-201ENST00000243326 TNNT1P13805 278 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 SPINK5Q9NQ38 1064 aaPredicted RBP9.06□□□□□ -0.96
RIF1-201ENST00000243326 TPM1P09493 284 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 CEP89Q96ST8 783 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 POLR3GO15318 223 aaPredicted RBP9.06□□□□□ -0.96
RIF1-201ENST00000243326 SIL1Q9H173 461 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 ATP6V1DQ9Y5K8 247 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 TSPYL1Q9H0U9 437 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 TSPYL4Q9UJ04 414 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 FILIP1Q7Z7B0 1213 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 SDF4Q9BRK5 362 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 PANK2Q9BZ23 570 aa9.06□□□□□ -0.96
RIF1-201ENST00000243326 NUCB2P80303 420 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 CPLX1O14810 134 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 PIBF1Q8WXW3 757 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 TCP11L2Q8N4U5 519 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 TRIM29Q14134 588 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 RUFY1Q96T51 708 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 CENPHQ9H3R5 247 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 PPP2R1AP30153 589 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 FERMT3Q86UX7 667 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 H0YHG0 523 aa9.05□□□□□ -0.96
RIF1-201ENST00000243326 AKAP17AQ02040 695 aaKnown RBP9.05□□□□□ -0.96
RIF1-201ENST00000243326 CCDC73Q6ZRK6 1079 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 DHX16O60231 1041 aaKnown RBP9.04□□□□□ -0.96
RIF1-201ENST00000243326 WASHC4Q2M389 1173 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 RRP12Q5JTH9 1297 aaKnown RBP9.04□□□□□ -0.96
RIF1-201ENST00000243326 MAP7D2Q96T17 732 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 ZNF526Q8TF50 670 aaPredicted RBP9.04□□□□□ -0.96
RIF1-201ENST00000243326 GPATCH11Q8N954 259 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 THUMPD2Q9BTF0 503 aaKnown RBP9.04□□□□□ -0.96
RIF1-201ENST00000243326 DTNBO60941 627 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 MIS18AQ9NYP9 233 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 MTHFSP49914 203 aa9.04□□□□□ -0.96
RIF1-201ENST00000243326 WASHC2CQ9Y4E1 1318 aa9.03□□□□□ -0.96
RIF1-201ENST00000243326 K7ELQ4 463 aaPredicted RBP9.03□□□□□ -0.96
RIF1-201ENST00000243326 TRHP20396 242 aaPredicted RBP9.03□□□□□ -0.96
RIF1-201ENST00000243326 ZKSCAN1P17029 563 aaPredicted RBP9.03□□□□□ -0.96
RIF1-201ENST00000243326 KIF21BO75037 1637 aa9.03□□□□□ -0.96
RIF1-201ENST00000243326 CCDC70Q6NSX1 233 aa9.03□□□□□ -0.96
RIF1-201ENST00000243326 PDCL2Q8N4E4 241 aa9.02□□□□□ -0.96
RIF1-201ENST00000243326 DDX11Q96FC9 970 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 FSD1Q9BTV5 496 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 TRMT1Q9NXH9 659 aaKnown RBP9.02□□□□□ -0.97
RIF1-201ENST00000243326 COG3Q96JB2 828 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 UACAQ9BZF9 1416 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 TSHZ3Q63HK5 1081 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 PLCD3Q8N3E9 789 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 GTF2E1P29083 439 aaPredicted RBP9.02□□□□□ -0.97
RIF1-201ENST00000243326 TNMDQ9H2S6 317 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 ISM2Q6H9L7 571 aa9.02□□□□□ -0.97
RIF1-201ENST00000243326 G3BP1Q13283 466 aaKnown RBP eCLIP9.02□□□□□ -0.978e-6■■■■□ 20.2
RIF1-201ENST00000243326 ARGLU1Q9NWB6 273 aaPredicted RBP9.02□□□□□ -0.97
RIF1-201ENST00000243326 CALRP27797 417 aaKnown RBP9.01□□□□□ -0.97
RIF1-201ENST00000243326 OLFM4Q6UX06 510 aa9.01□□□□□ -0.97
RIF1-201ENST00000243326 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.01□□□□□ -0.97
RIF1-201ENST00000243326 V9GYY5 206 aaPredicted RBP9.01□□□□□ -0.97
RIF1-201ENST00000243326 SYNE3Q6ZMZ3 975 aa9.01□□□□□ -0.97
RIF1-201ENST00000243326 SYTL4Q96C24 671 aaPredicted RBP9.01□□□□□ -0.97
RIF1-201ENST00000243326 TEFQ10587 303 aa9.01□□□□□ -0.97
RIF1-201ENST00000243326 G3V3G9 751 aa9.01□□□□□ -0.97
RIF1-201ENST00000243326 DCAF8Q5TAQ9 597 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms