RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 FAM193AP78312 1265 aa15.48■□□□□ 0.07
VAMP4-201ENST00000236192 KIF2AO00139 706 aaPredicted RBP15.48■□□□□ 0.07
VAMP4-201ENST00000236192 CREBRFQ8IUR6 639 aa15.48■□□□□ 0.07
VAMP4-201ENST00000236192 BAG4O95429 457 aaKnown RBP15.48■□□□□ 0.07
VAMP4-201ENST00000236192 CCDC192P0DO97 292 aa15.48■□□□□ 0.07
VAMP4-201ENST00000236192 EIF3JO75822 258 aaKnown RBP15.47■□□□□ 0.07
VAMP4-201ENST00000236192 LNPKQ9C0E8 428 aa15.47■□□□□ 0.07
VAMP4-201ENST00000236192 ERICH3Q5RHP9 1530 aa15.47■□□□□ 0.07
VAMP4-201ENST00000236192 FAM107BQ9H098 131 aa15.47■□□□□ 0.07
VAMP4-201ENST00000236192 GORABQ5T7V8 394 aa15.47■□□□□ 0.07
VAMP4-201ENST00000236192 MYCBPQ99417 103 aaPredicted RBP15.47■□□□□ 0.07
VAMP4-201ENST00000236192 PLEKHH2Q8IVE3 1493 aa15.47■□□□□ 0.07
VAMP4-201ENST00000236192 U2AF2P26368 475 aaKnown RBP eCLIP15.46■□□□□ 0.07
VAMP4-201ENST00000236192 MCM2P49736 904 aa15.46■□□□□ 0.07
VAMP4-201ENST00000236192 POLR3GO15318 223 aaPredicted RBP15.46■□□□□ 0.07
VAMP4-201ENST00000236192 TTC31Q49AM3 519 aaPredicted RBP15.46■□□□□ 0.06
VAMP4-201ENST00000236192 FILIP1Q7Z7B0 1213 aa15.46■□□□□ 0.06
VAMP4-201ENST00000236192 ADAMTS8Q9UP79 889 aa15.46■□□□□ 0.06
VAMP4-201ENST00000236192 BANK1Q8NDB2 785 aa15.45■□□□□ 0.06
VAMP4-201ENST00000236192 ZFP91Q96JP5 570 aaPredicted RBP15.45■□□□□ 0.06
VAMP4-201ENST00000236192 BCAR3O75815 825 aa15.45■□□□□ 0.06
VAMP4-201ENST00000236192 GTF2E1P29083 439 aaPredicted RBP15.45■□□□□ 0.06
VAMP4-201ENST00000236192 USP25Q9UHP3 1055 aa15.45■□□□□ 0.06
VAMP4-201ENST00000236192 ADCY5O95622 1261 aa15.44■□□□□ 0.06
VAMP4-201ENST00000236192 HSP90B1P14625 803 aaKnown RBP15.44■□□□□ 0.06
VAMP4-201ENST00000236192 PTPN14Q15678 1187 aa15.44■□□□□ 0.06
VAMP4-201ENST00000236192 TEX2Q8IWB9 1127 aa15.44■□□□□ 0.06
VAMP4-201ENST00000236192 ZNF397Q8NF99 534 aaPredicted RBP15.44■□□□□ 0.06
VAMP4-201ENST00000236192 UBXN4Q92575 508 aa15.44■□□□□ 0.06
VAMP4-201ENST00000236192 DHX8Q14562 1220 aaKnown RBP15.44■□□□□ 0.06
VAMP4-201ENST00000236192 RTF1Q92541 710 aaKnown RBP15.44■□□□□ 0.06
VAMP4-201ENST00000236192 TOMM22Q9NS69 142 aa15.44■□□□□ 0.06
VAMP4-201ENST00000236192 WIZO95785 1651 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 SSR1P43307 286 aaKnown RBP15.43■□□□□ 0.06
VAMP4-201ENST00000236192 SRPK2P78362 688 aaKnown RBP15.43■□□□□ 0.06
VAMP4-201ENST00000236192 CCDC70Q6NSX1 233 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 PRDM4Q9UKN5 801 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 NCOA1Q15788 1441 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 A0A1B0GUL7 405 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 IVLP07476 585 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 CT47A1Q5JQC4 288 aaPredicted RBP15.43■□□□□ 0.06
VAMP4-201ENST00000236192 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
VAMP4-201ENST00000236192 KIF18AQ8NI77 898 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 CDR1P51861 262 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 RAB3GAP1Q15042 981 aa15.43■□□□□ 0.06
VAMP4-201ENST00000236192 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.43■□□□□ 0.06
VAMP4-201ENST00000236192 MAP3K1Q13233 1512 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 KIAA0754O94854 1291 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 CERS3Q8IU89 383 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 C10orf67Q8IYJ2 551 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 KLHL34Q8N239 644 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 DNAAF4Q8WXU2 420 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 C16orf45Q96MC5 204 aaPredicted RBP15.42■□□□□ 0.06
VAMP4-201ENST00000236192 MAPKBP1O60336 1514 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 CUX2O14529 1486 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 DDX11Q96FC9 970 aa15.42■□□□□ 0.06
VAMP4-201ENST00000236192 HMMRO75330 724 aa15.41■□□□□ 0.06
VAMP4-201ENST00000236192 CHMP3Q9Y3E7 222 aa15.41■□□□□ 0.06
VAMP4-201ENST00000236192 CCDC191Q8NCU4 936 aa15.41■□□□□ 0.06
VAMP4-201ENST00000236192 RBM28Q9NW13 759 aaKnown RBP15.41■□□□□ 0.06
VAMP4-201ENST00000236192 ERLIN1O75477 346 aa15.41■□□□□ 0.06
VAMP4-201ENST00000236192 RIPK4P57078 832 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 EFCC1Q9HA90 598 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 PRIM1P49642 420 aaKnown RBP15.4■□□□□ 0.06
VAMP4-201ENST00000236192 ZNF830Q96NB3 372 aaPredicted RBP15.4■□□□□ 0.06
VAMP4-201ENST00000236192 BCCIPQ9P287 314 aaKnown RBP eCLIP15.4■□□□□ 0.06
VAMP4-201ENST00000236192 MIA2Q96PC5 1412 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 MNAT1P51948 309 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 CCDC183Q5T5S1 534 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 SNX21Q969T3 373 aa15.4■□□□□ 0.06
VAMP4-201ENST00000236192 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
VAMP4-201ENST00000236192 U2AF1L5P0DN76 240 aaPredicted RBP15.39■□□□□ 0.05
VAMP4-201ENST00000236192 U2AF1Q01081 240 aaKnown RBP eCLIP15.39■□□□□ 0.05
VAMP4-201ENST00000236192 RSPH14Q9UHP6 348 aa15.39■□□□□ 0.05
VAMP4-201ENST00000236192 SMC3Q9UQE7 1217 aa15.39■□□□□ 0.05
VAMP4-201ENST00000236192 LRRC9Q6ZRR7 1453 aa15.39■□□□□ 0.05
VAMP4-201ENST00000236192 WDR33Q9C0J8 1336 aaKnown RBP15.39■□□□□ 0.05
VAMP4-201ENST00000236192 FAM177BA6PVY3 158 aa15.39■□□□□ 0.05
VAMP4-201ENST00000236192 BICD2Q8TD16 824 aa15.39■□□□□ 0.05
VAMP4-201ENST00000236192 CFDP1Q9UEE9 299 aaPredicted RBP15.39■□□□□ 0.05
VAMP4-201ENST00000236192 RBM27Q9P2N5 1060 aaKnown RBP15.39■□□□□ 0.05
VAMP4-201ENST00000236192 PIBF1Q8WXW3 757 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 SMTNL1A8MU46 457 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 SMC5Q8IY18 1101 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 RRP7AQ9Y3A4 280 aaKnown RBP15.38■□□□□ 0.05
VAMP4-201ENST00000236192 NAT10Q9H0A0 1025 aaKnown RBP15.38■□□□□ 0.05
VAMP4-201ENST00000236192 BCL2L12Q9HB09 334 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 LMAN1P49257 510 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 HOMEZQ8IX15 550 aa15.38■□□□□ 0.05
VAMP4-201ENST00000236192 CEP135Q66GS9 1140 aa15.37■□□□□ 0.05
VAMP4-201ENST00000236192 DHX37Q8IY37 1157 aaKnown RBP15.37■□□□□ 0.05
VAMP4-201ENST00000236192 CARMIL1Q5VZK9 1371 aa15.37■□□□□ 0.05
VAMP4-201ENST00000236192 TTLL5Q6EMB2 1281 aa15.37■□□□□ 0.05
VAMP4-201ENST00000236192 RUFY1Q96T51 708 aa15.37■□□□□ 0.05
VAMP4-201ENST00000236192 ZNF445P59923 1031 aa15.36■□□□□ 0.05
VAMP4-201ENST00000236192 RSPH4AQ5TD94 716 aa15.36■□□□□ 0.05
VAMP4-201ENST00000236192 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.36■□□□□ 0.05
VAMP4-201ENST00000236192 SKIDA1Q1XH10 827 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 RBSNQ9H1K0 784 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 LRRFIP2Q9Y608 721 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms