RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	YEL014C	P39999	101 aa		4.11	□□□□□ -1.75
SUB2	YDL084W	YFL067W	P43537	175 aa		4.11	□□□□□ -1.75
SUB2	YDL084W	TOS6	P48560	102 aa		4.11	□□□□□ -1.75
SUB2	YDL084W	YMR254C	Q04838	102 aa		4.11	□□□□□ -1.75
SUB2	YDL084W	ECM19	Q06011	112 aa		4.11	□□□□□ -1.75
SUB2	YDL084W	YBR219C	P38317	127 aa		4.1	□□□□□ -1.75
SUB2	YDL084W	ATP17	Q06405	101 aa		4.1	□□□□□ -1.75
SUB2	YDL084W	YOR034C-A	Q3E735	80 aa		4.1	□□□□□ -1.75
SUB2	YDL084W	YKR032W	P36127	104 aa		4.09	□□□□□ -1.75
SUB2	YDL084W	CMC4	Q3E7A9	73 aa		4.08	□□□□□ -1.76
SUB2	YDL084W	YJR107C-A	P0CT86	78 aa		4.07	□□□□□ -1.76
SUB2	YDL084W	YNL190W	P53872	204 aa		4.06	□□□□□ -1.76
SUB2	YDL084W	MRPS12	P53732	153 aa		4.05	□□□□□ -1.76
SUB2	YDL084W	YPR195C	Q06594	109 aa		4.05	□□□□□ -1.76
SUB2	YDL084W	YPR108W-A	Q3E7B3	70 aa		4.05	□□□□□ -1.76
SUB2	YDL084W	HUG1	Q6Q5K6	68 aa		4.05	□□□□□ -1.76
SUB2	YDL084W	BRR2	P32639	2163 aa	Known RBP	4.05	□□□□□ -1.76
SUB2	YDL084W	YSF3	P0C074	85 aa	Predicted RBP	4.04	□□□□□ -1.76
SUB2	YDL084W	FPR1	P20081	114 aa	Known RBP	4.04	□□□□□ -1.76
SUB2	YDL084W	RPL33B	P41056	107 aa	Known RBP	4.04	□□□□□ -1.76
SUB2	YDL084W	DAD4	P69851	72 aa		4.04	□□□□□ -1.76
SUB2	YDL084W	CCW12	Q12127	133 aa		4.04	□□□□□ -1.76
SUB2	YDL084W	COX8	P04039	78 aa		4.02	□□□□□ -1.77
SUB2	YDL084W	TOM7	P53507	60 aa		4.02	□□□□□ -1.77
SUB2	YDL084W	FAS1	P07149	2051 aa	Known RBP	4.02	□□□□□ -1.77
SUB2	YDL084W	RPL38	P49167	78 aa	Known RBP	4.01	□□□□□ -1.77
SUB2	YDL084W	YNL122C	P53921	115 aa	Predicted RBP	4.01	□□□□□ -1.77
SUB2	YDL084W	ATP18	P81450	59 aa		4.01	□□□□□ -1.77
SUB2	YDL084W	YAL067W-A	Q8TGK6	75 aa		4.01	□□□□□ -1.77
SUB2	YDL084W	HUA1	P40325	198 aa		4	□□□□□ -1.77
SUB2	YDL084W	YGL014C-A	P0C5N1	53 aa		3.99	□□□□□ -1.77
SUB2	YDL084W	AQY2	P0CD90	149 aa		3.99	□□□□□ -1.77
SUB2	YDL084W	YDR210W	Q03482	75 aa		3.99	□□□□□ -1.77
SUB2	YDL084W	YOR008C-A	Q3E7B9	74 aa		3.99	□□□□□ -1.77
SUB2	YDL084W	YMR001C-A	Q8TGS9	76 aa		3.99	□□□□□ -1.77
SUB2	YDL084W	SDH6	Q3E785	79 aa		3.98	□□□□□ -1.77
SUB2	YDL084W	YLR157W-D	P0CE99	70 aa		3.97	□□□□□ -1.77
SUB2	YDL084W	SGF11	Q03067	99 aa		3.96	□□□□□ -1.77
SUB2	YDL084W	YIL102C	P40488	101 aa		3.95	□□□□□ -1.78
SUB2	YDL084W	YJL027C	P47063	138 aa	Predicted RBP	3.95	□□□□□ -1.78
SUB2	YDL084W	LCL2	Q08045	131 aa		3.95	□□□□□ -1.78
SUB2	YDL084W	YGL258W-A	Q3E740	77 aa		3.94	□□□□□ -1.78
SUB2	YDL084W	YGL041C-B	Q3E750	60 aa		3.94	□□□□□ -1.78
SUB2	YDL084W	YLR342W-A	Q3E810	57 aa		3.93	□□□□□ -1.78
SUB2	YDL084W	YMR122W-A	Q3E842	84 aa		3.93	□□□□□ -1.78
SUB2	YDL084W	YPR010C-A	A5Z2X5	72 aa		3.92	□□□□□ -1.78
SUB2	YDL084W	YFR009W-A	P0C5M9	85 aa		3.92	□□□□□ -1.78
SUB2	YDL084W	YOL097W-A	Q3E7Y9	61 aa		3.92	□□□□□ -1.78
SUB2	YDL084W	YOL013W-A	P0C272	63 aa	Predicted RBP	3.9	□□□□□ -1.79
SUB2	YDL084W	RPL33A	P05744	107 aa	Known RBP	3.89	□□□□□ -1.79
SUB2	YDL084W	YMR141C	P40211	102 aa		3.89	□□□□□ -1.79
SUB2	YDL084W	YOL085C	Q99345	113 aa		3.88	□□□□□ -1.79
SUB2	YDL084W	YER084W	P40057	128 aa		3.85	□□□□□ -1.79
SUB2	YDL084W	YJR146W	P47174	117 aa		3.85	□□□□□ -1.79
SUB2	YDL084W	YEL008W	P40001	126 aa		3.84	□□□□□ -1.79
SUB2	YDL084W	YHR007C-A	Q07074	71 aa		3.84	□□□□□ -1.79
SUB2	YDL084W	YBR201C-A	Q2V2Q3	67 aa		3.84	□□□□□ -1.79
SUB2	YDL084W	YBL039W-B	P0C268	59 aa		3.83	□□□□□ -1.8
SUB2	YDL084W	YDR114C	Q04597	100 aa		3.83	□□□□□ -1.8
SUB2	YDL084W	VAM10	Q08474	114 aa		3.83	□□□□□ -1.8
SUB2	YDL084W	BLM10	P43583	2143 aa		3.82	□□□□□ -1.8
SUB2	YDL084W	YJL144W	P47009	104 aa		3.81	□□□□□ -1.8
SUB2	YDL084W	YDL012C	Q12489	107 aa		3.81	□□□□□ -1.8
SUB2	YDL084W	YGR240C-A	Q3E786	66 aa		3.81	□□□□□ -1.8
SUB2	YDL084W	BEM2	P39960	2167 aa	Known RBP	3.81	□□□□□ -1.8
SUB2	YDL084W	YLR255C	O13574	117 aa		3.8	□□□□□ -1.8
SUB2	YDL084W	Q0032	Q9ZZX7	96 aa		3.8	□□□□□ -1.8
SUB2	YDL084W	SEN1	Q00416	2231 aa	Known RBP	3.8	□□□□□ -1.8
SUB2	YDL084W	YGR025W	P53216	100 aa		3.79	□□□□□ -1.8
SUB2	YDL084W	YOR011W-A	Q3E807	68 aa		3.78	□□□□□ -1.8
SUB2	YDL084W	MVB12	P42939	101 aa		3.76	□□□□□ -1.81
SUB2	YDL084W	SEC16	P48415	2195 aa	Known RBP	3.76	□□□□□ -1.81
SUB2	YDL084W	YBR200W-A	Q3E755	54 aa		3.75	□□□□□ -1.81
SUB2	YDL084W	TAR1	Q8TGM6	124 aa		3.75	□□□□□ -1.81
SUB2	YDL084W	YLL006W-A	Q3E814	58 aa		3.74	□□□□□ -1.81
SUB2	YDL084W	ACC1	Q00955	2233 aa	Known RBP	3.74	□□□□□ -1.81
SUB2	YDL084W	YIL086C	P40503	102 aa		3.73	□□□□□ -1.81
SUB2	YDL084W	YHR213W-B	Q8TGK1	99 aa		3.72	□□□□□ -1.81
SUB2	YDL084W	AUA1	P32450	94 aa		3.71	□□□□□ -1.81
SUB2	YDL084W	FAB1	P34756	2278 aa		3.7	□□□□□ -1.82
SUB2	YDL084W	COX7	P10174	60 aa		3.7	□□□□□ -1.82
SUB2	YDL084W	YJL133C-A	Q3E7A3	74 aa		3.7	□□□□□ -1.82
SUB2	YDL084W	YLR307C-A	Q3E825	87 aa		3.7	□□□□□ -1.82
SUB2	YDL084W	YOR072W	Q08486	104 aa		3.69	□□□□□ -1.82
SUB2	YDL084W	YBR230W-A	Q3E762	66 aa		3.69	□□□□□ -1.82
SUB2	YDL084W	YCL042W	P25572	119 aa		3.68	□□□□□ -1.82
SUB2	YDL084W	RPL29	P05747	59 aa	Predicted RBP	3.66	□□□□□ -1.82
SUB2	YDL084W	SIP18	P50263	79 aa		3.66	□□□□□ -1.82
SUB2	YDL084W	YJL009W	P47078	108 aa		3.65	□□□□□ -1.83
SUB2	YDL084W	NCE101	Q02820	53 aa		3.65	□□□□□ -1.83
SUB2	YDL084W	YOR394C-A	Q8TGJ0	55 aa		3.65	□□□□□ -1.83
SUB2	YDL084W	YAR064W	P39563	99 aa		3.62	□□□□□ -1.83
SUB2	YDL084W	RDS3	Q06835	107 aa	Predicted RBP	3.62	□□□□□ -1.83
SUB2	YDL084W	LCL1	Q02786	101 aa		3.61	□□□□□ -1.83
SUB2	YDL084W	YJR128W	P47162	119 aa		3.6	□□□□□ -1.83
SUB2	YDL084W	DDR2	P89113	61 aa		3.59	□□□□□ -1.83
SUB2	YDL084W	OLI1	P61829	76 aa		3.56	□□□□□ -1.84
SUB2	YDL084W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
SUB2	YDL084W	YNL162W-A	Q3E7A8	72 aa		3.54	□□□□□ -1.84
SUB2	YDL084W	YJL127C-B	Q3E828	52 aa		3.53	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 49.1 ms