RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 SOX5P35711 763 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 SCNN1AP37088 669 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 FANCCQ00597 558 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 HSP90AA4PQ58FG1 418 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 PIGZQ86VD9 579 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 C12orf29Q8N999 325 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 ZMIZ2Q8NF64 920 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 TCEAL4Q96EI5 215 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 LSM7Q9UK45 103 aaKnown RBP11.27□□□□□ -0.61
UBR4-208ENST00000459947 NUMBLQ9Y6R0 609 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 GREB1Q4ZG55 1949 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 DENND4CQ5VZ89 1909 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 TCF20Q9UGU0 1960 aaKnown RBP11.27□□□□□ -0.61
UBR4-208ENST00000459947 ZNF263O14978 683 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 OLFM2O95897 454 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 GLI1P08151 1106 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 USP4Q13107 963 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 NR1H3Q13133 447 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 PKDCCQ504Y2 493 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 FAM78AQ5JUQ0 283 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 CCDC26Q8TAB7 109 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 ZNF606Q8WXB4 792 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 NACA2Q9H009 215 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 TDP1Q9NUW8 608 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 FHOD1Q9Y613 1164 aa11.27□□□□□ -0.61
UBR4-208ENST00000459947 HHLA1C9JL84 531 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 MAN2B1O00754 1011 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 CKMP06732 381 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 UBASH3AP57075 661 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 PDE4CQ08493 712 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 BMP8AQ7Z5Y6 402 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 CSGALNACT1Q8TDX6 532 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 NELL2Q99435 816 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 F8VZ95 297 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 ZBED1O96006 694 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 HDCP19113 662 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 BRD2P25440 801 aaKnown RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 CCR2P41597 374 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 RPL34P49207 117 aaKnown RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 POLR2FP61218 127 aaKnown RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 CYP4F8P98187 520 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 ORC1Q13415 861 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 E2F5Q15329 346 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 SDHAF4Q5VUM1 108 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 PM20D1Q6GTS8 502 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 KAT5Q92993 513 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 IER2Q9BTL4 223 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 TRPC7Q9HCX4 862 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 RRN3Q9NYV6 651 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 ITIH6Q6UXX5 1313 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 NOTCH4Q99466 2003 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 A0A1W2PQJ5 194 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 DLL1O00548 723 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 LRRN2O75325 713 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 IFNAR2P48551 515 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 TOGARAM2Q6ZUX3 1019 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 APTXQ7Z2E3 356 aaKnown RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 TTC30AQ86WT1 665 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 ARID3BQ8IVW6 561 aaPredicted RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 SLC44A3Q8N4M1 653 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 C1orf131Q8NDD1 294 aaKnown RBP11.26□□□□□ -0.61
UBR4-208ENST00000459947 FBXL21Q9UKT6 434 aa11.26□□□□□ -0.61
UBR4-208ENST00000459947 HEPACAM2A8MVW5 462 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 OAS1P00973 400 aaKnown RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 TKTL1P51854 596 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 FCHO2Q0JRZ9 810 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 PREPLQ4J6C6 727 aaPredicted RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 BTBD8Q5XKL5 378 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 CPA6Q8N4T0 437 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 SLC35F5Q8WV83 523 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 HSD3B7Q9H2F3 369 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 BRD9Q9H8M2 597 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 ABCC13Q9NSE7 274 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 DNMT3LQ9UJW3 386 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 BZW2Q9Y6E2 419 aaKnown RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 OBSL1O75147 1896 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 MYH10P35580 1976 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 DOCK8Q8NF50 2099 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 MBL2P11226 248 aaPredicted RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 CDH5P33151 784 aaPredicted RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 ATP5C1P36542 298 aaKnown RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 JAM2P57087 298 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 COG7P83436 770 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 MAB21L3Q8N8X9 362 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 RNF139Q8WU17 664 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 SECISBP2LQ93073 1101 aaKnown RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 KCNK16Q96T55 309 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 FAM207AQ9NSI2 230 aaPredicted RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 GMIPQ9P107 970 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 E2F8A0AVK6 867 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 TADA3O75528 432 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 NFATC1O95644 943 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 LATS1O95835 1130 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 NR1I3Q14994 352 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 EFHC1Q5JVL4 640 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 TRIM67Q6ZTA4 783 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 LUZP1Q86V48 1076 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 SYN2Q92777 582 aaPredicted RBP11.25□□□□□ -0.61
UBR4-208ENST00000459947 ELMO3Q96BJ8 720 aa11.25□□□□□ -0.61
UBR4-208ENST00000459947 PRRX2Q99811 253 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms