RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTF4	YPR135W	PAU24	P38155	120 aa		0.98	□□□□□ -2.25
CTF4	YPR135W	YEL008W	P40001	126 aa		0.98	□□□□□ -2.25
CTF4	YPR135W	YIL014C-A	Q02598	104 aa		0.98	□□□□□ -2.25
CTF4	YPR135W	RPS25B	P0C0T4	108 aa	Known RBP	0.98	□□□□□ -2.25
CTF4	YPR135W	RPB7	P34087	171 aa		0.98	□□□□□ -2.25
CTF4	YPR135W	YEL014C	P39999	101 aa		0.98	□□□□□ -2.25
CTF4	YPR135W	RPS25A	Q3E792	108 aa	Predicted RBP	0.98	□□□□□ -2.25
CTF4	YPR135W	YGL041W-A	P0C5N3	154 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	YDR010C	Q12426	110 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	RRT15	Q3E811	62 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	KSH1	Q8TGJ3	72 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	DSE2	P38844	325 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	HSP10	P38910	106 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	YER187W	P40102	141 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	YGR164W	P53291	111 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	GPI11	Q06636	219 aa		0.97	□□□□□ -2.25
CTF4	YPR135W	UBC4	P15731	148 aa		0.96	□□□□□ -2.25
CTF4	YPR135W	SMX2	P40204	77 aa	Known RBP	0.96	□□□□□ -2.25
CTF4	YPR135W	GTT1	P40582	234 aa		0.96	□□□□□ -2.25
CTF4	YPR135W	SEN15	Q04675	128 aa		0.96	□□□□□ -2.25
CTF4	YPR135W	MRPL44	P19956	98 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	GRX5	Q02784	150 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	YMR090W	Q04304	227 aa	Known RBP	0.96	□□□□□ -2.26
CTF4	YPR135W	YLR194C	Q05777	254 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	NAT5	Q08689	176 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	YPL261C	Q08976	102 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	YCR001W	P25347	104 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	RSM19	P53733	91 aa	Predicted RBP	0.96	□□□□□ -2.26
CTF4	YPR135W	YHR086W-A	Q3E746	53 aa		0.96	□□□□□ -2.26
CTF4	YPR135W	PRE1	P22141	198 aa	Known RBP	0.95	□□□□□ -2.26
CTF4	YPR135W	YGL010W	P25338	174 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	AIM4	P38305	123 aa	Predicted RBP	0.95	□□□□□ -2.26
CTF4	YPR135W	YBR242W	P38331	238 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	COX23	P38824	151 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	SNU13	P39990	126 aa	Known RBP	0.95	□□□□□ -2.26
CTF4	YPR135W	YLR162W	Q06235	118 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	PCC1	Q3E833	88 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	QCR8	P08525	94 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	YGL014C-A	P0C5N1	53 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	PAU19	P0CE85	124 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	PAU3	P25610	124 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	ATG8	P38182	117 aa	RIP-Chip data	0.95	□□□□□ -2.26	not detected
CTF4	YPR135W	FIT1	Q04433	528 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	YDR029W	Q12111	104 aa		0.95	□□□□□ -2.26
CTF4	YPR135W	LCL1	Q02786	101 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	YLR296W	Q05898	108 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	YHR007C-A	Q07074	71 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	YLR307C-A	Q3E825	87 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	OST5	Q92316	86 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	RPS11A	P0CX47	156 aa	Known RBP	0.94	□□□□□ -2.26
CTF4	YPR135W	RPS11B	P0CX48	156 aa	Known RBP	0.94	□□□□□ -2.26
CTF4	YPR135W	YBR032W	P38223	100 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	YBR219C	P38317	127 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	DAD1	Q12248	94 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	YOS1	Q3E834	85 aa		0.94	□□□□□ -2.26
CTF4	YPR135W	HMRA1	P0CY11	126 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	MRPL11	P36521	249 aa	Predicted RBP	0.93	□□□□□ -2.26
CTF4	YPR135W	EMC5	P40540	141 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	HUR1	P45820	110 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	SNN1	P48232	102 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	YOR192C-C	Q3E736	78 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	YLL066W-B	Q8TGJ7	56 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	YDR034C-A	P0C289	58 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	MSL1	P40567	111 aa	Predicted RBP	0.93	□□□□□ -2.26
CTF4	YPR135W	SPC1	P46965	94 aa		0.93	□□□□□ -2.26
CTF4	YPR135W	YHR213W	P0CI67	198 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	HMRA2	P0CY13	119 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	PAU16	P35994	123 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	RPL13B	P40212	199 aa	Known RBP	0.92	□□□□□ -2.26
CTF4	YPR135W	PAU15	P40585	124 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	RGM1	Q00453	211 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	YOL118C	Q08259	102 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	YLR285C-A	Q3E771	56 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	COA3	Q3E7B2	85 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	COA6	Q3E846	104 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	YBR027C	P38220	110 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	LST8	P41318	303 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	PAU5	P43575	122 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	YMR082C	Q04276	118 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	HPA2	Q06592	156 aa		0.92	□□□□□ -2.26
CTF4	YPR135W	RPL36B	O14455	100 aa	Known RBP	0.91	□□□□□ -2.26
CTF4	YPR135W	RPL36A	P05745	100 aa	Predicted RBP	0.91	□□□□□ -2.26
CTF4	YPR135W	TOM7	P53507	60 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	YNL146C-A	Q3E7Z1	64 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	YOR011W-A	Q3E807	68 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	RPL33A	P05744	107 aa	Known RBP	0.91	□□□□□ -2.26
CTF4	YPR135W	RPS22A	P0C0W1	130 aa	Known RBP	0.91	□□□□□ -2.26
CTF4	YPR135W	POR2	P40478	281 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	AQY2	P0CD90	149 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	CYB5	P40312	120 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	YMR122C	Q03879	124 aa		0.91	□□□□□ -2.26
CTF4	YPR135W	YIL163C	P40448	117 aa		0.9	□□□□□ -2.27
CTF4	YPR135W	VMA21	P41806	77 aa		0.9	□□□□□ -2.27
CTF4	YPR135W	YFL065C	P43539	102 aa		0.9	□□□□□ -2.27
CTF4	YPR135W	COA4	Q05809	96 aa		0.9	□□□□□ -2.27
CTF4	YPR135W	YDR042C	Q03205	200 aa		0.9	□□□□□ -2.27
CTF4	YPR135W	ECM12	O13529	151 aa		0.89	□□□□□ -2.27
CTF4	YPR135W	GCV3	P39726	170 aa	Predicted RBP	0.89	□□□□□ -2.27
CTF4	YPR135W	YPR203W	Q08994	102 aa		0.89	□□□□□ -2.27
CTF4	YPR135W	CCW12	Q12127	133 aa		0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 49.5 ms