RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AFG2	YLR397C	OST1	P41543	476 aa	Known RBP	5.82	□□□□□ -1.48
AFG2	YLR397C	VEL1	P53058	206 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	ATP23	P53722	227 aa		5.82	□□□□□ -1.48
AFG2	YLR397C	YSY6	P38374	65 aa		5.81	□□□□□ -1.48
AFG2	YLR397C	NCA3	P46955	337 aa		5.81	□□□□□ -1.48
AFG2	YLR397C	BPH1	P25356	2167 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	PFY1	P07274	126 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	RPC11	Q04307	110 aa	Predicted RBP	5.8	□□□□□ -1.48
AFG2	YLR397C	ICY1	Q04329	127 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	YOR343C	Q12484	108 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	YDR246W-A	Q3E763	66 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	PIR5	P46999	287 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	YOL029C	Q08187	201 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	YLR111W	Q12528	110 aa		5.8	□□□□□ -1.48
AFG2	YLR397C	YHR213W	P0CI67	198 aa		5.79	□□□□□ -1.48
AFG2	YLR397C	MTC6	P38849	526 aa		5.79	□□□□□ -1.48
AFG2	YLR397C	EDC1	P53080	175 aa	Predicted RBP	5.79	□□□□□ -1.48
AFG2	YLR397C	RPL30	P14120	105 aa	Known RBP	5.79	□□□□□ -1.48
AFG2	YLR397C	RPL16A	P26784	199 aa	Known RBP	5.79	□□□□□ -1.48
AFG2	YLR397C	SEC16	P48415	2195 aa	Known RBP	5.78	□□□□□ -1.48
AFG2	YLR397C	FAS1	P07149	2051 aa	Known RBP	5.78	□□□□□ -1.48
AFG2	YLR397C	HSP12	P22943	109 aa	Known RBP	5.78	□□□□□ -1.48
AFG2	YLR397C	AGA1	P32323	725 aa		5.78	□□□□□ -1.48
AFG2	YLR397C	DAD4	P69851	72 aa		5.78	□□□□□ -1.48
AFG2	YLR397C	SMD1	Q02260	146 aa	Predicted RBP	5.78	□□□□□ -1.48
AFG2	YLR397C	RPL28	P02406	149 aa	Known RBP	5.77	□□□□□ -1.49
AFG2	YLR397C	YNL234W	P53857	426 aa		5.77	□□□□□ -1.49
AFG2	YLR397C	YML122C	Q03207	126 aa		5.77	□□□□□ -1.49
AFG2	YLR397C	RPS14B	P39516	138 aa	Known RBP	5.77	□□□□□ -1.49
AFG2	YLR397C	FHN1	P53279	174 aa		5.77	□□□□□ -1.49
AFG2	YLR397C	ERI1	P62651	68 aa	Known RBP	5.77	□□□□□ -1.49
AFG2	YLR397C	YMR181C	Q03231	154 aa		5.76	□□□□□ -1.49
AFG2	YLR397C	SHH4	Q06236	168 aa		5.76	□□□□□ -1.49
AFG2	YLR397C	COA3	Q3E7B2	85 aa		5.76	□□□□□ -1.49
AFG2	YLR397C	ACC1	Q00955	2233 aa	Known RBP	5.76	□□□□□ -1.49
AFG2	YLR397C	SPT4	P32914	102 aa	Predicted RBP	5.76	□□□□□ -1.49
AFG2	YLR397C	ICS3	P47034	131 aa		5.76	□□□□□ -1.49
AFG2	YLR397C	PBP4	Q07362	185 aa	Known RBP	5.76	□□□□□ -1.49
AFG2	YLR397C	SPO24	Q3E752	67 aa		5.76	□□□□□ -1.49
AFG2	YLR397C	NCE102	Q12207	173 aa	RIP-Chip data	5.75	□□□□□ -1.49	not detected
AFG2	YLR397C	YLR285C-A	Q3E771	56 aa		5.75	□□□□□ -1.49
AFG2	YLR397C	UBC13	P52490	153 aa		5.75	□□□□□ -1.49
AFG2	YLR397C	TOS8	P53147	276 aa		5.74	□□□□□ -1.49
AFG2	YLR397C	YBR126W-A	Q8TGU7	68 aa		5.74	□□□□□ -1.49
AFG2	YLR397C	TVP23	P38962	199 aa		5.73	□□□□□ -1.49
AFG2	YLR397C	YLR194C	Q05777	254 aa		5.73	□□□□□ -1.49
AFG2	YLR397C	PPT2	Q12036	173 aa		5.73	□□□□□ -1.49
AFG2	YLR397C	SPS100	P13130	326 aa		5.73	□□□□□ -1.49
AFG2	YLR397C	YLR156W	P0CE96	114 aa		5.71	□□□□□ -1.49
AFG2	YLR397C	YLR159W	P0CE97	114 aa		5.71	□□□□□ -1.49
AFG2	YLR397C	YLR161W	P0CE98	114 aa		5.71	□□□□□ -1.49
AFG2	YLR397C	YDR274C	P87283	123 aa		5.71	□□□□□ -1.49
AFG2	YLR397C	VPS68	Q12016	184 aa		5.71	□□□□□ -1.49
AFG2	YLR397C	NCE101	Q02820	53 aa		5.71	□□□□□ -1.5
AFG2	YLR397C	MGR2	Q02889	113 aa		5.71	□□□□□ -1.5
AFG2	YLR397C	YOR034C-A	Q3E735	80 aa		5.71	□□□□□ -1.5
AFG2	YLR397C	ATP15	P21306	62 aa		5.7	□□□□□ -1.5
AFG2	YLR397C	AIM4	P38305	123 aa	Predicted RBP	5.7	□□□□□ -1.5
AFG2	YLR397C	YMR295C	Q03559	197 aa		5.7	□□□□□ -1.5
AFG2	YLR397C	YHR214C-D	P0CX93	97 aa		5.7	□□□□□ -1.5
AFG2	YLR397C	MPC2	P38857	129 aa		5.7	□□□□□ -1.5
AFG2	YLR397C	YOR381W-A	Q3E804	55 aa		5.7	□□□□□ -1.5
AFG2	YLR397C	BRR2	P32639	2163 aa	Known RBP	5.69	□□□□□ -1.5
AFG2	YLR397C	YHR214C-E	Q8TGK0	99 aa		5.69	□□□□□ -1.5
AFG2	YLR397C	SEN1	Q00416	2231 aa	Known RBP	5.68	□□□□□ -1.5
AFG2	YLR397C	KRE9	P39005	276 aa		5.68	□□□□□ -1.5
AFG2	YLR397C	PGU1	P47180	361 aa		5.68	□□□□□ -1.5
AFG2	YLR397C	GLO1	P50107	326 aa		5.68	□□□□□ -1.5
AFG2	YLR397C	IRA2	P19158	3079 aa		5.68	□□□□□ -1.5
AFG2	YLR397C	RPB9	P27999	122 aa		5.67	□□□□□ -1.5
AFG2	YLR397C	SPI1	P40092	148 aa		5.67	□□□□□ -1.5
AFG2	YLR397C	YIL029C	P40538	142 aa		5.67	□□□□□ -1.5
AFG2	YLR397C	ATP20	Q12233	115 aa		5.67	□□□□□ -1.5
AFG2	YLR397C	YFR035C	P43608	114 aa		5.66	□□□□□ -1.5
AFG2	YLR397C	RPL26A	P05743	127 aa	Known RBP	5.66	□□□□□ -1.5
AFG2	YLR397C	LDB16	P25587	256 aa		5.66	□□□□□ -1.5
AFG2	YLR397C	YKR045C	P36138	183 aa		5.66	□□□□□ -1.5
AFG2	YLR397C	HSP150	P32478	413 aa		5.65	□□□□□ -1.5
AFG2	YLR397C	DCV1	P43595	202 aa		5.65	□□□□□ -1.5
AFG2	YLR397C	MRPS12	P53732	153 aa		5.65	□□□□□ -1.5
AFG2	YLR397C	YGL258W-A	Q3E740	77 aa		5.65	□□□□□ -1.5
AFG2	YLR397C	POL2	P21951	2222 aa	Known RBP	5.65	□□□□□ -1.5
AFG2	YLR397C	RPL15A	P05748	204 aa	Known RBP	5.64	□□□□□ -1.51
AFG2	YLR397C	YHR022C	P38763	256 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	MIG3	P39943	394 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	HUR1	P45820	110 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	IRC19	Q07843	230 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	YCR022C	P25620	114 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	YEL045C	P32616	141 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	RSM18	P40033	138 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	PEX17	P40155	199 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	IMP2	P46972	177 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	PCP1	P53259	346 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	YGR121W-A	Q3E816	71 aa		5.64	□□□□□ -1.51
AFG2	YLR397C	MDM35	O60200	86 aa		5.63	□□□□□ -1.51
AFG2	YLR397C	AIR2	Q12476	344 aa	Known RBP	5.63	□□□□□ -1.51
AFG2	YLR397C	YDR114C	Q04597	100 aa		5.63	□□□□□ -1.51
AFG2	YLR397C	MSA2	P36157	363 aa		5.62	□□□□□ -1.51
AFG2	YLR397C	YAL064W-B	O13512	126 aa		5.62	□□□□□ -1.51
AFG2	YLR397C	CTR2	P38865	189 aa		5.62	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 312.6 ms