RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 KIAA1958Q8N8K9 716 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 TTC8Q8TAM2 541 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 TNIP3Q96KP6 325 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 TRPC7Q9HCX4 862 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 GCNT4Q9P109 453 aa20.32■□□□□ 0.84
CCDC28A-203ENST00000617445 ATP8B3O60423 1300 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 ZNF202O95125 648 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 TDGF1P13385 188 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 HDCP19113 662 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 CCINQ13939 588 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 MTF1Q14872 753 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 PON2Q15165 354 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 ZACNQ401N2 412 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 CEP135Q66GS9 1140 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 TSSK4Q6SA08 328 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 SECISBP2LQ93073 1101 aaKnown RBP20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 EPC1Q9H2F5 836 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 EBF3Q9H4W6 596 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 HPS4Q9NQG7 708 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 NME7Q9Y5B8 376 aa20.31■□□□□ 0.84
CCDC28A-203ENST00000617445 F8VP50 259 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 TRDMT1O14717 391 aaKnown RBP20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 RPL13P26373 211 aaKnown RBP20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 GRSF1Q12849 480 aaKnown RBP eCLIP20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 GAS6Q14393 721 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 ZNF77Q15935 545 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 GUF1Q8N442 669 aaKnown RBP20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 CPA6Q8N4T0 437 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 OSCP1Q8WVF1 389 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 CHAMP1Q96JM3 812 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 CYP2S1Q96SQ9 504 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 HINFPQ9BQA5 517 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 ARHGAP26Q9UNA1 814 aa20.3■□□□□ 0.84
CCDC28A-203ENST00000617445 CLSTN1O94985 981 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 RTN3O95197 1032 aaPredicted RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 VNN1O95497 513 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 TRIM21P19474 475 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 HOXA6P31267 233 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 USP4Q13107 963 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 NR1H3Q13133 447 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 TMEM196Q5HYL7 178 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 INTS8Q75QN2 995 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 SV2AQ7L0J3 742 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 GPR161Q8N6U8 529 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 ARL14EPQ8N8R7 260 aaPredicted RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 ATP2A3Q93084 1043 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 SLITRK1Q96PX8 696 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 SLC22A12Q96S37 553 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 B3GNT5Q9BYG0 378 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 DPEP3Q9H4B8 488 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 SMYD3Q9H7B4 428 aa20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 RBM12Q9NTZ6 932 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 DUS2Q9NX74 493 aaKnown RBP20.29■□□□□ 0.84
CCDC28A-203ENST00000617445 C2orf78A6NCI8 922 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 ZNF840PA6NDX5 716 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 ATG13O75143 517 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 PRR29P0C7W0 189 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 NR2F2P24468 414 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 CNR2P34972 360 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 IFNAR2P48551 515 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 VAMP7P51809 220 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 USP46P62068 366 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 DLG4P78352 724 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 SATB1Q01826 763 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 TRIM68Q6AZZ1 485 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 UNC93AQ86WB7 457 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 NUP93Q8N1F7 819 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 SH3RF2Q8TEC5 729 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 OVCA2Q8WZ82 227 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 ZNF518BQ9C0D4 1074 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 ECT2Q9H8V3 914 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 COMMD8Q9NX08 183 aa20.28■□□□□ 0.84
CCDC28A-203ENST00000617445 HELZP42694 1942 aaKnown RBP20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 ASS1P00966 412 aaKnown RBP20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 KRT13P13646 458 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 DRD1P21728 446 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 CDH8P55286 799 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 NUCB2P80303 420 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 SLC7A9P82251 487 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 FBXO43Q4G163 708 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 WDR44Q5JSH3 913 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 PDZD8Q8NEN9 1154 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 RIN3Q8TB24 985 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 IMPG2Q9BZV3 1241 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 GOLPH3LQ9H4A5 285 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 NCDNQ9UBB6 729 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 RAB23Q9ULC3 237 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 SMG5Q9UPR3 1016 aaKnown RBP20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 CEP250Q9BV73 2442 aa20.27■□□□□ 0.84
CCDC28A-203ENST00000617445 GOLGA6L4A6NEF3 574 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 OTOL1A6NHN0 477 aaPredicted RBP20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 ARSAP15289 507 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 YWHAQP27348 245 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 PSMC2P35998 433 aaKnown RBP20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 MCCD1P59942 119 aaPredicted RBP20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 TAF10Q12962 218 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 ADAM9Q13443 819 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 Q6ZS52 159 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 CRYBG2Q8N1P7 616 aa20.26■□□□□ 0.83
CCDC28A-203ENST00000617445 SMARCD1Q96GM5 515 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms