RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YPD1Q07688 167 aa-0.37□□□□□ -2.47
RPF1YHR088W YOR385WQ08909 290 aa-0.37□□□□□ -2.47
RPF1YHR088W QCR2P07257 368 aa-0.38□□□□□ -2.47
RPF1YHR088W PFY1P07274 126 aa-0.38□□□□□ -2.47
RPF1YHR088W HSP12P22943 109 aaKnown RBP-0.38□□□□□ -2.47
RPF1YHR088W POR2P40478 281 aa-0.38□□□□□ -2.47
RPF1YHR088W YJR128WP47162 119 aa-0.38□□□□□ -2.47
RPF1YHR088W YPL067CQ02754 198 aa-0.38□□□□□ -2.47
RPF1YHR088W RAF1Q06891 181 aa-0.38□□□□□ -2.47
RPF1YHR088W NAT5Q08689 176 aa-0.38□□□□□ -2.47
RPF1YHR088W UBR1P19812 1950 aa-0.38□□□□□ -2.47
RPF1YHR088W MRPL31P14063 131 aaPredicted RBP-0.39□□□□□ -2.47
RPF1YHR088W UTP11P34247 250 aaPredicted RBP-0.39□□□□□ -2.47
RPF1YHR088W AME1P38313 324 aa-0.39□□□□□ -2.47
RPF1YHR088W YFR035CP43608 114 aa-0.39□□□□□ -2.47
RPF1YHR088W VPS51P36116 164 aa-0.4□□□□□ -2.47
RPF1YHR088W DER1P38307 211 aa-0.4□□□□□ -2.47
RPF1YHR088W YGR201CP42936 225 aa-0.4□□□□□ -2.47
RPF1YHR088W FAS2P19097 1887 aaKnown RBP-0.41□□□□□ -2.47
RPF1YHR088W FIG1P38224 298 aa-0.41□□□□□ -2.48
RPF1YHR088W LSM1P47017 172 aaKnown RBP-0.41□□□□□ -2.48
RPF1YHR088W BRR2P32639 2163 aaKnown RBP-0.41□□□□□ -2.48
RPF1YHR088W MYO1P08964 1928 aa-0.41□□□□□ -2.48
RPF1YHR088W POL2P21951 2222 aaKnown RBP-0.41□□□□□ -2.48
RPF1YHR088W CHD1P32657 1468 aa-0.41□□□□□ -2.48
RPF1YHR088W YDR010CQ12426 110 aa-0.42□□□□□ -2.48
RPF1YHR088W EFG1Q3E705 233 aaKnown RBP-0.42□□□□□ -2.48
RPF1YHR088W EMP24P32803 203 aaKnown RBP-0.43□□□□□ -2.48
RPF1YHR088W MRPL11P36521 249 aaPredicted RBP-0.43□□□□□ -2.48
RPF1YHR088W AIM18P38884 321 aa-0.43□□□□□ -2.48
RPF1YHR088W COF1Q03048 143 aaKnown RBP-0.43□□□□□ -2.48
RPF1YHR088W NSL1Q12143 216 aa-0.43□□□□□ -2.48
RPF1YHR088W CMC2Q3E7A4 109 aa-0.43□□□□□ -2.48
RPF1YHR088W SEC16P48415 2195 aaKnown RBP-0.44□□□□□ -2.48
RPF1YHR088W SUI1P32911 108 aaKnown RBP-0.44□□□□□ -2.48
RPF1YHR088W RPS1AP33442 255 aaKnown RBP-0.44□□□□□ -2.48
RPF1YHR088W QCR10P37299 77 aa-0.44□□□□□ -2.48
RPF1YHR088W YGR017WP53210 297 aa-0.44□□□□□ -2.48
RPF1YHR088W LCL1Q02786 101 aa-0.44□□□□□ -2.48
RPF1YHR088W GTT2Q12390 233 aa-0.44□□□□□ -2.48
RPF1YHR088W MDN1Q12019 4910 aaKnown RBP-0.44□□□□□ -2.48
RPF1YHR088W TY4B-JP47024 1803 aa-0.44□□□□□ -2.48
RPF1YHR088W TY1B-HO13535 1793 aa-0.45□□□□□ -2.48
RPF1YHR088W SNT2P53127 1403 aa-0.45□□□□□ -2.48
RPF1YHR088W MRPL44P19956 98 aa-0.45□□□□□ -2.48
RPF1YHR088W GSP1P32835 219 aaKnown RBP-0.45□□□□□ -2.48
RPF1YHR088W YIL163CP40448 117 aa-0.45□□□□□ -2.48
RPF1YHR088W LSM8P47093 109 aaKnown RBP-0.45□□□□□ -2.48
RPF1YHR088W YGL149WP53116 101 aa-0.45□□□□□ -2.48
RPF1YHR088W YOL164W-AQ3E7A5 60 aa-0.45□□□□□ -2.48
RPF1YHR088W MED11Q99278 115 aa-0.45□□□□□ -2.48
RPF1YHR088W PET20Q99373 253 aa-0.45□□□□□ -2.48
RPF1YHR088W SRX1P36077 127 aa-0.46□□□□□ -2.48
RPF1YHR088W ATP14Q12349 124 aa-0.46□□□□□ -2.48
RPF1YHR088W PAU21P0CE86 164 aa-0.47□□□□□ -2.48
RPF1YHR088W PAU22P0CE87 164 aa-0.47□□□□□ -2.48
RPF1YHR088W ICS3P47034 131 aa-0.47□□□□□ -2.48
RPF1YHR088W SPG1P50088 95 aa-0.47□□□□□ -2.48
RPF1YHR088W RAV2Q03956 351 aa-0.47□□□□□ -2.48
RPF1YHR088W SDH7Q04401 133 aa-0.47□□□□□ -2.48
RPF1YHR088W OCA6Q12454 224 aa-0.47□□□□□ -2.48
RPF1YHR088W PET54P10834 293 aa-0.48□□□□□ -2.49
RPF1YHR088W HAP3P13434 144 aa-0.48□□□□□ -2.49
RPF1YHR088W YMR320WQ04897 101 aa-0.48□□□□□ -2.49
RPF1YHR088W YRF1-3P0CX14 1859 aa-0.49□□□□□ -2.49
RPF1YHR088W YRF1-7P0CX15 1859 aa-0.49□□□□□ -2.49
RPF1YHR088W SUA7P29055 345 aaPredicted RBP-0.49□□□□□ -2.49
RPF1YHR088W YEA6P39953 335 aa-0.49□□□□□ -2.49
RPF1YHR088W ARL3Q02804 198 aa-0.49□□□□□ -2.49
RPF1YHR088W LDB18Q07887 179 aa-0.49□□□□□ -2.49
RPF1YHR088W SPC3Q12133 184 aa-0.49□□□□□ -2.49
RPF1YHR088W YGR240C-AQ3E786 66 aa-0.49□□□□□ -2.49
RPF1YHR088W YCR050CP25630 102 aa-0.5□□□□□ -2.49
RPF1YHR088W PRS3P38689 320 aaKnown RBP-0.5□□□□□ -2.49
RPF1YHR088W YAL064WP39711 94 aa-0.5□□□□□ -2.49
RPF1YHR088W HPM1P40481 377 aa-0.5□□□□□ -2.49
RPF1YHR088W FCF2Q12035 217 aaPredicted RBP-0.5□□□□□ -2.49
RPF1YHR088W YOR1P53049 1477 aa-0.5□□□□□ -2.49
RPF1YHR088W HSP10P38910 106 aa-0.51□□□□□ -2.49
RPF1YHR088W YDR366CP87287 132 aa-0.51□□□□□ -2.49
RPF1YHR088W RPL36BO14455 100 aaKnown RBP-0.52□□□□□ -2.49
RPF1YHR088W RPL36AP05745 100 aaPredicted RBP-0.52□□□□□ -2.49
RPF1YHR088W HHO1P53551 258 aa-0.52□□□□□ -2.49
RPF1YHR088W PKR1Q03880 122 aaKnown RBP-0.52□□□□□ -2.49
RPF1YHR088W YJL197C-AP0C5P0 93 aa-0.53□□□□□ -2.49
RPF1YHR088W MRPS12P53732 153 aa-0.53□□□□□ -2.49
RPF1YHR088W ENV10Q99382 181 aa-0.53□□□□□ -2.49
RPF1YHR088W RPL22AP05749 121 aaKnown RBP-0.54□□□□□ -2.5
RPF1YHR088W TRS20P38334 175 aa-0.54□□□□□ -2.5
RPF1YHR088W EFM5P53200 248 aaKnown RBP-0.54□□□□□ -2.5
RPF1YHR088W YNL190WP53872 204 aa-0.54□□□□□ -2.5
RPF1YHR088W YBR072C-AQ3E794 53 aa-0.54□□□□□ -2.5
RPF1YHR088W YAP3P38749 330 aa-0.55□□□□□ -2.5
RPF1YHR088W YHR173CP38864 112 aa-0.55□□□□□ -2.5
RPF1YHR088W TRM732Q03496 1420 aa-0.55□□□□□ -2.5
RPF1YHR088W YLR255CO13574 117 aa-0.56□□□□□ -2.5
RPF1YHR088W RPL14AP36105 138 aaKnown RBP-0.56□□□□□ -2.5
RPF1YHR088W RPL14BP38754 138 aaKnown RBP-0.56□□□□□ -2.5
RPF1YHR088W YGR039WP53225 103 aa-0.56□□□□□ -2.5
RPF1YHR088W YGL041C-BQ3E750 60 aa-0.56□□□□□ -2.5
Retrieved 100 of 5,963 RNA–protein pairs in 44.7 ms