RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM6	YDL077C	EGT2	P42835	1041 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	SKI6	P46948	246 aa	Predicted RBP	0.9	□□□□□ -2.26
VAM6	YDL077C	YIP5	P53108	310 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	MSO1	P53604	210 aa	Known RBP	0.9	□□□□□ -2.26
VAM6	YDL077C	MGR2	Q02889	113 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	YPL039W	Q03080	316 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	LPP1	Q04396	274 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	YMR317W	Q04893	1140 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	LSM6	Q06406	86 aa	Known RBP	0.9	□□□□□ -2.26
VAM6	YDL077C	CSI2	Q08054	341 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	MSA1	Q08471	629 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	YOR029W	Q12243	111 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	RNH203	Q12338	110 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	YKL065W-A	Q2V2P2	73 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	YDR182W-A	Q3E796	67 aa		0.9	□□□□□ -2.26
VAM6	YDL077C	SOD1	P00445	154 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	TRP1	P00912	224 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	OPI3	P05375	206 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YCR025C	P25352	136 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	CSH1	P38287	376 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	MED6	P38782	295 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	MST28	P39552	234 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YND1	P40009	630 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	ERG28	P40030	148 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	SHO1	P40073	367 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	VHS2	P40463	436 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	MRPL49	P40858	161 aa	Predicted RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	BNA1	P47096	177 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YJR120W	P47157	116 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	SUN4	P53616	420 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	HST4	P53688	370 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YNR048W	P53740	393 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	RHO5	P53879	331 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	YMR175W-A	Q3E766	64 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YPR108W-A	Q3E7B3	70 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YOS1	Q3E834	85 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YLR149C	Q99296	730 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	IGO2	Q9P305	131 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	TIM9	O74700	87 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	CDC43	P18898	376 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	ARF2	P19146	181 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	RFA2	P26754	273 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	TOA2	P32774	122 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.9	□□□□□ -2.27	not detected
VAM6	YDL077C	AUR1	P36107	401 aa	Predicted RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	GPI18	P38211	433 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	PHO88	P38264	188 aa	Predicted RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	OM14	P38325	134 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	ARC40	P38328	384 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	YGR269W	P40326	108 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	TOS6	P48560	102 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YIP1	P53039	248 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YNR071C	P53757	342 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	WSC2	P53832	503 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	HAL1	Q01766	294 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	RPL21A	Q02753	160 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	PET191	Q02772	108 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YMR103C	Q04436	120 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YMR252C	Q04814	134 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	NMA1	Q06178	401 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	RLM1	Q12224	676 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	AYT1	Q12226	474 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	RPL21B	Q12672	160 aa	Known RBP	0.9	□□□□□ -2.27
VAM6	YDL077C	YDL007C-A	Q2V2Q0	85 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YDR381C-A	Q3E6R5	114 aa		0.9	□□□□□ -2.27
VAM6	YDL077C	YAL064W-B	O13512	126 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	AQY1	P0CD91	305 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	RPS8A	P0CX39	200 aa	Known RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	RPS8B	P0CX40	200 aa	Known RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	CUP1-1	P0CX80	61 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	CUP1-2	P0CX81	61 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	ARF1	P11076	181 aa	Known RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	ROX3	P25046	220 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	YCR043C	P25361	127 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	TIM12	P32830	109 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	MSA2	P36157	363 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	IML3	P38265	245 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	YHR180W	P38868	163 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	DFG10	P40526	253 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	UBC13	P52490	153 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	VEL1	P53058	206 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	YNL143C	P53908	130 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	YDR102C	Q03864	110 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	FCF1	Q05498	189 aa	Predicted RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	MCH4	Q08268	501 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	COA2	Q3E823	68 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	PFY1	P07274	126 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	LDB16	P25587	256 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	RPL16B	P26785	198 aa	Known RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	IES6	P32617	166 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	YSY6	P38374	65 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	RPP1	P38786	293 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	MTC6	P38849	526 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	ECO1	P43605	281 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	VPS25	P47142	202 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	MST27	P53176	234 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	FHN1	P53279	174 aa		0.89	□□□□□ -2.27
VAM6	YDL077C	TRM112	P53738	135 aa	Predicted RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	SWT21	P53873	357 aa	Predicted RBP	0.89	□□□□□ -2.27
VAM6	YDL077C	TIM10	P87108	93 aa		0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 50.6 ms